Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 ST3GAL6-214ENST00000483910 1886 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
ZNF540Q8NDQ6 GRB7-201ENST00000309156 2243 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
ZNF540Q8NDQ6 JAKMIP1-208ENST00000637373 1362 ntTSL 5 BASIC16.54■□□□□ 0.24
ZNF540Q8NDQ6 NAA60-201ENST00000360862 2522 ntTSL 2 BASIC16.54■□□□□ 0.24
ZNF540Q8NDQ6 ARNTL2-208ENST00000544915 6785 ntAPPRIS ALT2 TSL 5 BASIC16.54■□□□□ 0.24
ZNF540Q8NDQ6 PHRF1-201ENST00000264555 5523 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
ZNF540Q8NDQ6 HSD11B1L-221ENST00000583928 1319 ntTSL 5 BASIC16.54■□□□□ 0.24
ZNF540Q8NDQ6 CDK4-201ENST00000257904 2076 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
ZNF540Q8NDQ6 ABHD14B-206ENST00000483233 2056 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
ZNF540Q8NDQ6 INVS-203ENST00000374921 1654 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
ZNF540Q8NDQ6 UVSSA-209ENST00000512728 1668 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
ZNF540Q8NDQ6 RAB15-203ENST00000533601 3515 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
ZNF540Q8NDQ6 SRGAP2B-207ENST00000641863 2367 ntAPPRIS P5 BASIC16.54■□□□□ 0.24
ZNF540Q8NDQ6 AC110769.1-201ENST00000420161 815 ntTSL 3 BASIC16.54■□□□□ 0.24
ZNF540Q8NDQ6 C20orf166-AS1-202ENST00000436101 761 ntTSL 5 BASIC16.54■□□□□ 0.24
ZNF540Q8NDQ6 CRNDE-210ENST00000560912 459 ntTSL 5 BASIC16.54■□□□□ 0.24
ZNF540Q8NDQ6 CLDND2-203ENST00000601435 575 ntAPPRIS P1 TSL 3 BASIC16.54■□□□□ 0.24
ZNF540Q8NDQ6 GRAMD4P8-201ENST00000605465 1115 ntBASIC16.54■□□□□ 0.24
ZNF540Q8NDQ6 KANK3-205ENST00000610351 1191 ntTSL 5 BASIC16.54■□□□□ 0.24
ZNF540Q8NDQ6 AC097662.2-201ENST00000641359 267 ntAPPRIS P1 BASIC16.54■□□□□ 0.24
ZNF540Q8NDQ6 DDHD1-202ENST00000357758 5603 ntAPPRIS P3 TSL 1 (best) BASIC16.54■□□□□ 0.24
ZNF540Q8NDQ6 EZR-202ENST00000367075 3096 ntAPPRIS P2 TSL 1 (best) BASIC16.54■□□□□ 0.24
ZNF540Q8NDQ6 KDM5C-202ENST00000375379 5245 ntAPPRIS ALT2 TSL 5 BASIC16.54■□□□□ 0.24
ZNF540Q8NDQ6 A4GALT-203ENST00000401850 2321 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
ZNF540Q8NDQ6 MAP3K9-206ENST00000555993 4449 ntAPPRIS P3 TSL 1 (best) BASIC16.54■□□□□ 0.24
ZNF540Q8NDQ6 NBPF11-205ENST00000615281 5494 ntAPPRIS P2 TSL 1 (best) BASIC16.54■□□□□ 0.24
ZNF540Q8NDQ6 DLK2-203ENST00000372488 1590 ntAPPRIS P3 TSL 1 (best) BASIC16.54■□□□□ 0.24
ZNF540Q8NDQ6 TRABD-202ENST00000380909 2272 ntAPPRIS P3 TSL 5 BASIC16.54■□□□□ 0.24
ZNF540Q8NDQ6 SMARCA4-203ENST00000429416 5691 ntTSL 2 BASIC16.54■□□□□ 0.24
ZNF540Q8NDQ6 CBX1-201ENST00000225603 2232 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
ZNF540Q8NDQ6 SLC10A3-204ENST00000393587 1862 ntAPPRIS P3 TSL 2 BASIC16.54■□□□□ 0.24
ZNF540Q8NDQ6 LBX2-AS1-201ENST00000548978 1852 ntTSL 3 BASIC16.54■□□□□ 0.24
ZNF540Q8NDQ6 LAMC1-201ENST00000258341 7889 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
ZNF540Q8NDQ6 SUPT20H-203ENST00000360252 2843 ntAPPRIS P3 TSL 1 (best) BASIC16.54■□□□□ 0.24
ZNF540Q8NDQ6 CLEC18B-206ENST00000620745 1847 ntTSL 5 BASIC16.54■□□□□ 0.24
ZNF540Q8NDQ6 OSBP2-202ENST00000401475 2468 ntTSL 2 BASIC16.54■□□□□ 0.24
ZNF540Q8NDQ6 KLF10-201ENST00000285407 3097 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
ZNF540Q8NDQ6 ZAP70-201ENST00000264972 2437 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
ZNF540Q8NDQ6 TMEM104-202ENST00000417024 1781 ntTSL 2 BASIC16.54■□□□□ 0.24
ZNF540Q8NDQ6 PRKAG1-206ENST00000548065 2071 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
ZNF540Q8NDQ6 CORO6-212ENST00000584969 1416 ntAPPRIS ALT1 TSL 5 BASIC16.53■□□□□ 0.24
ZNF540Q8NDQ6 TRIM27-201ENST00000377194 2686 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
ZNF540Q8NDQ6 TCOF1-206ENST00000445265 4825 ntAPPRIS ALT2 TSL 5 BASIC16.53■□□□□ 0.24
ZNF540Q8NDQ6 ARHGAP9-204ENST00000430041 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
ZNF540Q8NDQ6 RECQL4-210ENST00000621189 3896 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
ZNF540Q8NDQ6 ZNF211-211ENST00000541801 2629 ntAPPRIS ALT2 TSL 3 BASIC16.53■□□□□ 0.24
ZNF540Q8NDQ6 KIF5C-201ENST00000435030 6931 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
ZNF540Q8NDQ6 TTLL10-202ENST00000379289 2259 ntAPPRIS P1 TSL 2 BASIC16.53■□□□□ 0.24
ZNF540Q8NDQ6 AC046158.3-201ENST00000624947 2558 ntBASIC16.53■□□□□ 0.24
ZNF540Q8NDQ6 RTEL1-TNFRSF6B-202ENST00000482936 4931 ntAPPRIS P5 TSL 2 BASIC16.53■□□□□ 0.24
ZNF540Q8NDQ6 MFSD11-202ENST00000355954 2832 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
ZNF540Q8NDQ6 CMIP-201ENST00000398040 2825 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
ZNF540Q8NDQ6 BIRC7-202ENST00000342412 1302 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
ZNF540Q8NDQ6 CUTC-202ENST00000370476 1346 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
ZNF540Q8NDQ6 ABCG5-201ENST00000260645 2740 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
ZNF540Q8NDQ6 CLDND2-201ENST00000291715 974 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
ZNF540Q8NDQ6 AP000593.1-201ENST00000393668 712 ntBASIC16.53■□□□□ 0.24
ZNF540Q8NDQ6 CCDC124-201ENST00000445755 938 ntAPPRIS P1 TSL 2 BASIC16.53■□□□□ 0.24
ZNF540Q8NDQ6 RBM17P1-201ENST00000453646 1190 ntBASIC16.53■□□□□ 0.24
ZNF540Q8NDQ6 CHCHD10-202ENST00000484558 1171 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
ZNF540Q8NDQ6 MFSD4A-206ENST00000489709 1136 ntTSL 5 BASIC16.53■□□□□ 0.24
ZNF540Q8NDQ6 Z85996.1-201ENST00000494644 937 ntBASIC16.53■□□□□ 0.24
ZNF540Q8NDQ6 TESC-AS1-201ENST00000547006 1053 ntTSL 2 BASIC16.53■□□□□ 0.24
ZNF540Q8NDQ6 AC126696.3-202ENST00000570159 553 ntTSL 5 BASIC16.53■□□□□ 0.24
ZNF540Q8NDQ6 CCDC124-203ENST00000597436 1055 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
ZNF540Q8NDQ6 CCDC28A-203ENST00000617445 1240 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
ZNF540Q8NDQ6 RGS11-202ENST00000316163 2376 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
ZNF540Q8NDQ6 BTBD1-202ENST00000379403 1467 ntTSL 5 BASIC16.53■□□□□ 0.24
ZNF540Q8NDQ6 AL357673.1-201ENST00000637610 2542 ntAPPRIS P5 TSL 5 BASIC16.53■□□□□ 0.24
ZNF540Q8NDQ6 FAM99A-201ENST00000382167 1432 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
ZNF540Q8NDQ6 STAT3-201ENST00000264657 5047 ntAPPRIS P4 TSL 1 (best) BASIC16.53■□□□□ 0.24
ZNF540Q8NDQ6 BOC-212ENST00000485230 2173 ntTSL 2 BASIC16.53■□□□□ 0.24
ZNF540Q8NDQ6 RGS12-203ENST00000344733 5469 ntAPPRIS P4 TSL 1 (best) BASIC16.52■□□□□ 0.24
ZNF540Q8NDQ6 TAF3-201ENST00000344293 4872 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
ZNF540Q8NDQ6 CEMP1-202ENST00000567119 1374 ntAPPRIS P2 BASIC16.52■□□□□ 0.24
ZNF540Q8NDQ6 CCDC120-206ENST00000603986 2379 ntAPPRIS ALT2 TSL 2 BASIC16.52■□□□□ 0.24
ZNF540Q8NDQ6 NPAS3-202ENST00000356141 2802 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.24
ZNF540Q8NDQ6 TSSK2-201ENST00000399635 1816 ntAPPRIS P1 BASIC16.52■□□□□ 0.24
ZNF540Q8NDQ6 ARFGAP1-201ENST00000353546 2776 ntAPPRIS P4 TSL 1 (best) BASIC16.52■□□□□ 0.24
ZNF540Q8NDQ6 MAST3-201ENST00000262811 5896 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
ZNF540Q8NDQ6 PMS1-213ENST00000441310 3225 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
ZNF540Q8NDQ6 FAM9B-202ENST00000362066 2047 ntTSL 2 BASIC16.52■□□□□ 0.24
ZNF540Q8NDQ6 GDE1-201ENST00000353258 2958 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
ZNF540Q8NDQ6 AC004835.1-201ENST00000428222 2907 ntTSL 5 BASIC16.52■□□□□ 0.24
ZNF540Q8NDQ6 KCMF1-201ENST00000409785 7568 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
ZNF540Q8NDQ6 CCT7-202ENST00000398422 1234 ntTSL 2 BASIC16.52■□□□□ 0.24
ZNF540Q8NDQ6 AC008105.2-201ENST00000420431 579 ntTSL 4 BASIC16.52■□□□□ 0.24
ZNF540Q8NDQ6 ROPN1L-202ENST00000503804 1291 ntAPPRIS P1 TSL 2 BASIC16.52■□□□□ 0.24
ZNF540Q8NDQ6 AC116562.2-201ENST00000507042 360 ntBASIC16.52■□□□□ 0.24
ZNF540Q8NDQ6 CBLN1-202ENST00000536749 718 ntAPPRIS P1 TSL 5 BASIC16.52■□□□□ 0.24
ZNF540Q8NDQ6 PPOX-219ENST00000544598 813 ntTSL 2 BASIC16.52■□□□□ 0.24
ZNF540Q8NDQ6 TK2-213ENST00000563369 882 ntTSL 5 BASIC16.52■□□□□ 0.24
ZNF540Q8NDQ6 AC026271.3-201ENST00000571884 352 ntBASIC16.52■□□□□ 0.24
ZNF540Q8NDQ6 ZNF599-203ENST00000588760 948 ntTSL 2 BASIC16.52■□□□□ 0.24
ZNF540Q8NDQ6 AC010331.1-201ENST00000611423 582 ntBASIC16.52■□□□□ 0.24
ZNF540Q8NDQ6 REXO1L10P-201ENST00000615707 1290 ntBASIC16.52■□□□□ 0.24
ZNF540Q8NDQ6 CROCCP2-205ENST00000639481 1296 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
ZNF540Q8NDQ6 KCNJ2-AS1-201ENST00000590966 2442 ntBASIC16.52■□□□□ 0.24
ZNF540Q8NDQ6 PPFIA3-201ENST00000334186 4733 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
ZNF540Q8NDQ6 ANTXR1-201ENST00000303714 5859 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 28.2 ms