Protein–RNA interactions for Protein: Q6A163

KRT39, Keratin, type I cytoskeletal 39, humanhuman

Predictions only

Length 491 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT39Q6A163 YIF1B-204ENST00000392124 1404 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
KRT39Q6A163 CDK10-208ENST00000505473 1424 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
KRT39Q6A163 GOLGA2P10-204ENST00000618004 1349 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
KRT39Q6A163 AC097374.2-201ENST00000618617 1306 ntBASIC19.25■□□□□ 0.67
KRT39Q6A163 AL355312.1-201ENST00000407115 2176 ntBASIC19.25■□□□□ 0.67
KRT39Q6A163 TAF4B-201ENST00000269142 5260 ntAPPRIS P3 TSL 1 (best) BASIC19.24■□□□□ 0.67
KRT39Q6A163 FMR1-205ENST00000370475 4308 ntAPPRIS P3 TSL 1 (best) BASIC19.24■□□□□ 0.67
KRT39Q6A163 SCARB1-203ENST00000415380 2731 ntTSL 2 BASIC19.24■□□□□ 0.67
KRT39Q6A163 CHEK2-202ENST00000348295 1771 ntTSL 5 BASIC19.24■□□□□ 0.67
KRT39Q6A163 APMAP-201ENST00000217456 2430 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
KRT39Q6A163 PDLIM7-202ENST00000355841 1689 ntAPPRIS P4 TSL 1 (best) BASIC19.24■□□□□ 0.67
KRT39Q6A163 AP001273.2-201ENST00000638767 2993 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.67
KRT39Q6A163 MZF1-206ENST00000599369 2587 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
KRT39Q6A163 ATP2A2-201ENST00000308664 4453 ntAPPRIS ALT1 TSL 1 (best) BASIC19.24■□□□□ 0.67
KRT39Q6A163 NIPAL2-202ENST00000430223 4496 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
KRT39Q6A163 CARHSP1-201ENST00000311052 746 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
KRT39Q6A163 AC099669.1-201ENST00000457331 456 ntTSL 3 BASIC19.24■□□□□ 0.67
KRT39Q6A163 AC091076.1-201ENST00000610741 619 ntBASIC19.24■□□□□ 0.67
KRT39Q6A163 ZNF211-211ENST00000541801 2629 ntAPPRIS ALT2 TSL 3 BASIC19.24■□□□□ 0.67
KRT39Q6A163 CCDC115-201ENST00000259229 1646 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
KRT39Q6A163 CLDN9-201ENST00000445369 2050 ntAPPRIS P1 BASIC19.24■□□□□ 0.67
KRT39Q6A163 EIF3C-211ENST00000566866 2986 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
KRT39Q6A163 WWP1-202ENST00000517970 4686 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
KRT39Q6A163 ZCCHC23-201ENST00000500526 1951 ntTSL 2 BASIC19.24■□□□□ 0.67
KRT39Q6A163 SLCO6A1-202ENST00000389019 2340 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
KRT39Q6A163 LRCH1-201ENST00000311191 4710 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
KRT39Q6A163 GRK6-202ENST00000355958 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC19.24■□□□□ 0.67
KRT39Q6A163 HADHB-208ENST00000537713 2142 ntTSL 2 BASIC19.24■□□□□ 0.67
KRT39Q6A163 LRRC61-201ENST00000323078 1684 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
KRT39Q6A163 INF2-204ENST00000398337 1689 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
KRT39Q6A163 ZNF589-203ENST00000427617 1677 ntTSL 2 BASIC19.24■□□□□ 0.67
KRT39Q6A163 DDX51-202ENST00000397333 4718 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
KRT39Q6A163 RAB4A-205ENST00000618010 2799 ntTSL 3 BASIC19.23■□□□□ 0.67
KRT39Q6A163 ZNF500-202ENST00000545009 2440 ntTSL 2 BASIC19.23■□□□□ 0.67
KRT39Q6A163 DTNBP1-203ENST00000355917 1359 ntTSL 5 BASIC19.23■□□□□ 0.67
KRT39Q6A163 EWSR1-202ENST00000332035 1989 ntAPPRIS ALT2 TSL 2 BASIC19.23■□□□□ 0.67
KRT39Q6A163 PGM5-202ENST00000396396 3338 ntAPPRIS P1 TSL 2 BASIC19.23■□□□□ 0.67
KRT39Q6A163 KLK12-201ENST00000250351 882 ntAPPRIS P4 TSL 5 BASIC19.23■□□□□ 0.67
KRT39Q6A163 DUS3L-201ENST00000309061 2113 ntAPPRIS P3 TSL 1 (best) BASIC19.23■□□□□ 0.67
KRT39Q6A163 KLK12-202ENST00000319590 1074 ntAPPRIS ALT2 TSL 5 BASIC19.23■□□□□ 0.67
KRT39Q6A163 PBXIP1-201ENST00000368460 1175 ntAPPRIS ALT2 TSL 3 BASIC19.23■□□□□ 0.67
KRT39Q6A163 AC246785.2-201ENST00000432512 513 ntBASIC19.23■□□□□ 0.67
KRT39Q6A163 C16orf91-201ENST00000442039 978 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
KRT39Q6A163 KLK12-205ENST00000529888 735 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
KRT39Q6A163 AL807752.6-202ENST00000622933 765 ntAPPRIS P5 TSL 3 BASIC19.23■□□□□ 0.67
KRT39Q6A163 SPACA6-213ENST00000637797 1073 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
KRT39Q6A163 TBC1D3P5-201ENST00000579401 1545 ntBASIC19.23■□□□□ 0.67
KRT39Q6A163 CYP2D7-208ENST00000614967 1504 ntTSL 5 BASIC19.23■□□□□ 0.67
KRT39Q6A163 BX276092.7-203ENST00000637198 1536 ntBASIC19.23■□□□□ 0.67
KRT39Q6A163 GRIN3B-201ENST00000234389 3281 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
KRT39Q6A163 ZNF385B-204ENST00000410066 3288 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
KRT39Q6A163 ADAM15-207ENST00000368413 1901 ntTSL 5 BASIC19.23■□□□□ 0.67
KRT39Q6A163 ZNF394-201ENST00000337673 2179 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
KRT39Q6A163 HECTD2-203ENST00000371681 2175 ntTSL 2 BASIC19.23■□□□□ 0.67
KRT39Q6A163 CLSTN1-202ENST00000377298 5221 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
KRT39Q6A163 PHF1-201ENST00000374512 2224 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
KRT39Q6A163 GTF2IP4-202ENST00000544802 3609 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
KRT39Q6A163 COL18A1-202ENST00000355480 5924 ntAPPRIS P3 TSL 1 (best) BASIC19.23■□□□□ 0.67
KRT39Q6A163 SCNN1D-201ENST00000325425 2679 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
KRT39Q6A163 TRIM50-201ENST00000333149 2047 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
KRT39Q6A163 RNF166-203ENST00000541206 2419 ntTSL 2 BASIC19.22■□□□□ 0.67
KRT39Q6A163 AC068446.2-201ENST00000500487 2165 ntTSL 2 BASIC19.22■□□□□ 0.67
KRT39Q6A163 ZNF22-201ENST00000298299 2551 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
KRT39Q6A163 ACBD6-201ENST00000367595 1670 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
KRT39Q6A163 ING5-202ENST00000406941 946 ntAPPRIS ALT1 TSL 1 (best) BASIC19.22■□□□□ 0.67
KRT39Q6A163 RPS14-203ENST00000407193 784 ntAPPRIS P1 TSL 2 BASIC19.22■□□□□ 0.67
KRT39Q6A163 PCAT7-201ENST00000452148 1164 ntTSL 2 BASIC19.22■□□□□ 0.67
KRT39Q6A163 AC008429.1-203ENST00000518894 548 ntTSL 4 BASIC19.22■□□□□ 0.67
KRT39Q6A163 ANAPC11-217ENST00000579978 575 ntAPPRIS P1 TSL 2 BASIC19.22■□□□□ 0.67
KRT39Q6A163 AC010422.3-201ENST00000597692 838 ntAPPRIS P1 TSL 2 BASIC19.22■□□□□ 0.67
KRT39Q6A163 ZNF575-205ENST00000601282 1086 ntAPPRIS P1 TSL 2 BASIC19.22■□□□□ 0.67
KRT39Q6A163 SMIM8-209ENST00000608868 815 ntAPPRIS P1 TSL 5 BASIC19.22■□□□□ 0.67
KRT39Q6A163 AC027682.6-202ENST00000621378 795 ntTSL 2 BASIC19.22■□□□□ 0.67
KRT39Q6A163 AC005906.2-206ENST00000638180 1029 ntTSL 5 BASIC19.22■□□□□ 0.67
KRT39Q6A163 ADCY3-201ENST00000260600 5050 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
KRT39Q6A163 OXSR1-201ENST00000311806 4553 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
KRT39Q6A163 CFLAR-208ENST00000423241 2128 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
KRT39Q6A163 FAM124A-202ENST00000322475 4761 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
KRT39Q6A163 SPRED3-201ENST00000338502 4778 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
KRT39Q6A163 SHBG-201ENST00000340624 1311 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
KRT39Q6A163 KRT18P1-202ENST00000452408 1331 ntBASIC19.22■□□□□ 0.67
KRT39Q6A163 ARF1-214ENST00000541182 2006 ntAPPRIS P1 TSL 2 BASIC19.22■□□□□ 0.67
KRT39Q6A163 YAP1-208ENST00000531439 1490 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
KRT39Q6A163 QPRT-202ENST00000395384 2343 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
KRT39Q6A163 ZDHHC8P1-204ENST00000433168 2309 ntTSL 2 BASIC19.22■□□□□ 0.67
KRT39Q6A163 KDM8-202ENST00000441782 1612 ntTSL 2 BASIC19.22■□□□□ 0.67
KRT39Q6A163 KCNC2-203ENST00000393288 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
KRT39Q6A163 RAB43-201ENST00000315150 4467 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
KRT39Q6A163 ANKS1A-201ENST00000360359 6347 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
KRT39Q6A163 APOA5-203ENST00000542499 1929 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.67
KRT39Q6A163 PRKAG1-206ENST00000548065 2071 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
KRT39Q6A163 SPTBN4-204ENST00000392025 8671 ntAPPRIS ALT1 TSL 5 BASIC19.21■□□□□ 0.67
KRT39Q6A163 ATP2A3-201ENST00000309890 4826 ntTSL 5 BASIC19.21■□□□□ 0.67
KRT39Q6A163 ADAM33-203ENST00000379861 3674 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
KRT39Q6A163 TCTN1-229ENST00000614115 1965 ntTSL 5 BASIC19.21■□□□□ 0.67
KRT39Q6A163 ERMARD-210ENST00000588451 2146 ntTSL 5 BASIC19.21■□□□□ 0.67
KRT39Q6A163 MARK2-207ENST00000502399 2885 ntAPPRIS ALT2 TSL 5 BASIC19.21■□□□□ 0.67
KRT39Q6A163 MOS-201ENST00000311923 1041 ntAPPRIS P1 BASIC19.21■□□□□ 0.67
KRT39Q6A163 MRPL20-201ENST00000344843 721 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
KRT39Q6A163 S100A3-201ENST00000368712 579 ntAPPRIS P1 TSL 3 BASIC19.21■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 38.5 ms