Protein–RNA interactions for Protein: P32297

CHRNA3, Neuronal acetylcholine receptor subunit alpha-3, humanhuman

Predictions only

Length 505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHRNA3P32297 WDR13-201ENST00000218056 2124 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CHRNA3P32297 PLCH2-203ENST00000378486 4837 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CHRNA3P32297 PLCH2-204ENST00000419816 4837 ntAPPRIS P1 TSL 5 BASIC18.8■□□□□ 0.6
CHRNA3P32297 PLEKHF2-201ENST00000315367 2881 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CHRNA3P32297 AGO3-202ENST00000324350 1726 ntTSL 2 BASIC18.8■□□□□ 0.6
CHRNA3P32297 AGER-205ENST00000375069 1538 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
CHRNA3P32297 ALDH3B1-206ENST00000615463 1300 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
CHRNA3P32297 LINC01554-202ENST00000436592 2052 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
CHRNA3P32297 AL024508.2-201ENST00000607749 1894 ntBASIC18.8■□□□□ 0.6
CHRNA3P32297 IL27RA-201ENST00000263379 2962 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CHRNA3P32297 TRAM1-201ENST00000262213 2785 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CHRNA3P32297 DUTP2-201ENST00000519164 463 ntBASIC18.8■□□□□ 0.6
CHRNA3P32297 AC104390.1-201ENST00000555663 520 ntBASIC18.8■□□□□ 0.6
CHRNA3P32297 ILKAP-212ENST00000622223 1088 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
CHRNA3P32297 AP000550.4-202ENST00000639755 178 ntBASIC18.8■□□□□ 0.6
CHRNA3P32297 KIAA1522-202ENST00000373480 5294 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
CHRNA3P32297 KIAA1522-203ENST00000373481 5293 ntAPPRIS ALT2 TSL 2 BASIC18.8■□□□□ 0.6
CHRNA3P32297 TADA1-201ENST00000367874 2159 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CHRNA3P32297 RCAN3-209ENST00000616511 2527 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
CHRNA3P32297 GABARAPL1-201ENST00000266458 1957 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CHRNA3P32297 ZNF256-202ENST00000598928 1958 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
CHRNA3P32297 TAF1C-222ENST00000570117 2349 ntAPPRIS ALT2 TSL 2 BASIC18.8■□□□□ 0.6
CHRNA3P32297 PRCC-201ENST00000271526 2105 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CHRNA3P32297 GRAMD1B-214ENST00000635736 2814 ntAPPRIS P1 TSL 5 BASIC18.8■□□□□ 0.6
CHRNA3P32297 CAPN15-201ENST00000219611 4744 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CHRNA3P32297 PAX7-201ENST00000375375 2260 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
CHRNA3P32297 SQSTM1-202ENST00000389805 2986 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CHRNA3P32297 OSBPL1A-204ENST00000399443 3317 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
CHRNA3P32297 AC010198.1-201ENST00000500076 1552 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
CHRNA3P32297 FZD1-201ENST00000287934 6963 ntAPPRIS P1 BASIC18.8■□□□□ 0.6
CHRNA3P32297 BSCL2-201ENST00000278893 1364 ntAPPRIS ALT2 TSL 2 BASIC18.8■□□□□ 0.6
CHRNA3P32297 NRP1-204ENST00000374822 2213 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
CHRNA3P32297 CYP2W1-202ENST00000340150 2361 ntTSL 2 BASIC18.79■□□□□ 0.6
CHRNA3P32297 CDX4-201ENST00000373514 1515 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CHRNA3P32297 ERBB2-205ENST00000578199 2526 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
CHRNA3P32297 KCNQ5-212ENST00000628967 3527 ntTSL 2 BASIC18.79■□□□□ 0.6
CHRNA3P32297 PLCB3-204ENST00000540288 4469 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CHRNA3P32297 KLC2-201ENST00000316924 2990 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CHRNA3P32297 SLC22A11-202ENST00000377581 1975 ntTSL 5 BASIC18.79■□□□□ 0.6
CHRNA3P32297 COQ6-201ENST00000334571 2118 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CHRNA3P32297 OGFR-201ENST00000290291 2410 ntAPPRIS P2 TSL 1 (best) BASIC18.79■□□□□ 0.6
CHRNA3P32297 MAP3K7CL-206ENST00000399928 1904 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CHRNA3P32297 OCIAD1-204ENST00000425583 1915 ntTSL 3 BASIC18.79■□□□□ 0.6
CHRNA3P32297 PCDH7-206ENST00000543491 4457 ntAPPRIS ALT2 BASIC18.79■□□□□ 0.6
CHRNA3P32297 HOXA-AS3-205ENST00000524304 2063 ntTSL 2 BASIC18.79■□□□□ 0.6
CHRNA3P32297 IGLL1-201ENST00000249053 716 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
CHRNA3P32297 HBZP1-201ENST00000354915 429 ntBASIC18.79■□□□□ 0.6
CHRNA3P32297 CD1E-211ENST00000368166 1271 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
CHRNA3P32297 AC131097.3-201ENST00000413820 1228 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
CHRNA3P32297 AC005091.1-201ENST00000441955 1190 ntTSL 3 BASIC18.79■□□□□ 0.6
CHRNA3P32297 C16orf91-201ENST00000442039 978 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CHRNA3P32297 AC092597.1-201ENST00000487352 616 ntBASIC18.79■□□□□ 0.6
CHRNA3P32297 ABCD4-228ENST00000557588 763 ntTSL 3 BASIC18.79■□□□□ 0.6
CHRNA3P32297 AL136038.3-201ENST00000561909 1096 ntBASIC18.79■□□□□ 0.6
CHRNA3P32297 MIR3917-201ENST00000580971 93 ntBASIC18.79■□□□□ 0.6
CHRNA3P32297 MIR3180-4-201ENST00000582223 153 ntBASIC18.79■□□□□ 0.6
CHRNA3P32297 NBPF14-202ENST00000593495 1082 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CHRNA3P32297 AL157888.1-201ENST00000631930 593 ntBASIC18.79■□□□□ 0.6
CHRNA3P32297 FCGRT-202ENST00000426395 1559 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CHRNA3P32297 CFC1-202ENST00000615342 1554 ntTSL 5 BASIC18.79■□□□□ 0.6
CHRNA3P32297 CFC1B-202ENST00000619050 1554 ntTSL 5 BASIC18.79■□□□□ 0.6
CHRNA3P32297 PSRC1-204ENST00000369909 1742 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
CHRNA3P32297 BBS5-202ENST00000392663 3107 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
CHRNA3P32297 AL355312.1-201ENST00000407115 2176 ntBASIC18.79■□□□□ 0.6
CHRNA3P32297 KLHL31-201ENST00000370905 5743 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CHRNA3P32297 SCARB2-223ENST00000640640 4608 ntTSL 5 BASIC18.79■□□□□ 0.6
CHRNA3P32297 ECE2-205ENST00000404464 3229 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
CHRNA3P32297 RNF113B-201ENST00000267291 1376 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CHRNA3P32297 MRAS-204ENST00000464896 1534 ntTSL 2 BASIC18.79■□□□□ 0.6
CHRNA3P32297 GCDH-201ENST00000222214 1956 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CHRNA3P32297 TTC3-203ENST00000399010 2115 ntTSL 5 BASIC18.79■□□□□ 0.6
CHRNA3P32297 PDE2A-226ENST00000544570 3119 ntTSL 5 BASIC18.78■□□□□ 0.6
CHRNA3P32297 SLC29A2-206ENST00000546034 2509 ntAPPRIS P1 TSL 5 BASIC18.78■□□□□ 0.6
CHRNA3P32297 ODF2-204ENST00000372814 2249 ntTSL 2 BASIC18.78■□□□□ 0.6
CHRNA3P32297 TBX18-202ENST00000369663 6245 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CHRNA3P32297 EVPL-202ENST00000586740 6223 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
CHRNA3P32297 LUC7L-201ENST00000293872 1456 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CHRNA3P32297 AC005332.1-201ENST00000577698 1310 ntBASIC18.78■□□□□ 0.6
CHRNA3P32297 KIAA1324L-207ENST00000444627 3527 ntTSL 5 BASIC18.78■□□□□ 0.6
CHRNA3P32297 RASL10B-201ENST00000603017 3205 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CHRNA3P32297 NINL-201ENST00000278886 4969 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
CHRNA3P32297 SYVN1-201ENST00000294256 3048 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CHRNA3P32297 SSB-201ENST00000260956 1709 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CHRNA3P32297 SKIDA1-202ENST00000449193 6598 ntAPPRIS P2 TSL 3 BASIC18.78■□□□□ 0.6
CHRNA3P32297 EVI5L-202ENST00000538904 2418 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CHRNA3P32297 SPAST-202ENST00000345662 5116 ntAPPRIS ALT1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CHRNA3P32297 DUS3L-201ENST00000309061 2113 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
CHRNA3P32297 ISCA1-202ENST00000326094 1264 ntTSL 3 BASIC18.78■□□□□ 0.6
CHRNA3P32297 CLN3-202ENST00000355477 1173 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
CHRNA3P32297 HELT-202ENST00000505610 846 ntAPPRIS ALT1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CHRNA3P32297 VENTXP5-201ENST00000523979 775 ntBASIC18.78■□□□□ 0.6
CHRNA3P32297 PRTN3-202ENST00000544537 1036 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
CHRNA3P32297 C14orf144-201ENST00000553757 537 ntTSL 4 BASIC18.78■□□□□ 0.6
CHRNA3P32297 AC140504.1-202ENST00000568222 652 ntTSL 5 BASIC18.78■□□□□ 0.6
CHRNA3P32297 ZNF575-205ENST00000601282 1086 ntAPPRIS P1 TSL 2 BASIC18.78■□□□□ 0.6
CHRNA3P32297 HEBP2-204ENST00000607197 10014 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CHRNA3P32297 ZNF286A-204ENST00000464847 5616 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CHRNA3P32297 CAB39-202ENST00000409788 1626 ntAPPRIS P1 TSL 2 BASIC18.78■□□□□ 0.6
CHRNA3P32297 CXXC1-202ENST00000412036 2280 ntAPPRIS ALT1 TSL 1 (best) BASIC18.77■□□□□ 0.6
CHRNA3P32297 TPST2-201ENST00000338754 5697 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 32 ms