Protein–RNA interactions for Protein: P28702

RXRB, Retinoic acid receptor RXR-beta, humanhuman

Predictions only

Length 533 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RXRBP28702 MCAT-201ENST00000290429 2056 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
RXRBP28702 NEURL4-201ENST00000315614 5182 ntAPPRIS ALT2 TSL 1 (best) BASIC23.12■■□□□ 1.29
RXRBP28702 PAX4-204ENST00000463946 1613 ntTSL 1 (best) BASIC23.11■■□□□ 1.29
RXRBP28702 ZNF296-201ENST00000303809 1744 ntAPPRIS P2 TSL 1 (best) BASIC23.11■■□□□ 1.29
RXRBP28702 GRB10-206ENST00000402497 2289 ntTSL 5 BASIC23.11■■□□□ 1.29
RXRBP28702 PWWP2AP1-201ENST00000429776 2273 ntBASIC23.11■■□□□ 1.29
RXRBP28702 ACADS-201ENST00000242592 1950 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
RXRBP28702 CLEC10A-204ENST00000571664 1442 ntAPPRIS ALT2 TSL 1 (best) BASIC23.11■■□□□ 1.29
RXRBP28702 FAM86MP-201ENST00000340703 885 ntBASIC23.11■■□□□ 1.29
RXRBP28702 CHIA-203ENST00000353665 1214 ntTSL 1 (best) BASIC23.11■■□□□ 1.29
RXRBP28702 GUCA2A-201ENST00000357001 569 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
RXRBP28702 CLCN6-207ENST00000376497 814 ntTSL 3 BASIC23.11■■□□□ 1.29
RXRBP28702 LINC00982-205ENST00000420957 435 ntBASIC23.11■■□□□ 1.29
RXRBP28702 AC027369.6-201ENST00000525520 931 ntBASIC23.11■■□□□ 1.29
RXRBP28702 AC084125.2-203ENST00000532766 821 ntTSL 3 BASIC23.11■■□□□ 1.29
RXRBP28702 TMEM120B-206ENST00000540377 962 ntTSL 3 BASIC23.11■■□□□ 1.29
RXRBP28702 CD63-208ENST00000549117 1233 ntAPPRIS P1 TSL 3 BASIC23.11■■□□□ 1.29
RXRBP28702 RAB43P1-201ENST00000561790 589 ntBASIC23.11■■□□□ 1.29
RXRBP28702 TBXAS1-206ENST00000425687 2080 ntTSL 1 (best) BASIC23.11■■□□□ 1.29
RXRBP28702 PELI3-201ENST00000320740 2740 ntTSL 1 (best) BASIC23.11■■□□□ 1.29
RXRBP28702 LSM14A-202ENST00000540746 2152 ntTSL 2 BASIC23.11■■□□□ 1.29
RXRBP28702 SPERT-201ENST00000310521 1613 ntAPPRIS P3 TSL 1 (best) BASIC23.11■■□□□ 1.29
RXRBP28702 KIAA0895L-206ENST00000563902 2233 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
RXRBP28702 MUTYH-203ENST00000372098 1839 ntTSL 1 (best) BASIC23.1■■□□□ 1.29
RXRBP28702 MUTYH-204ENST00000372104 1823 ntAPPRIS ALT2 TSL 1 (best) BASIC23.1■■□□□ 1.29
RXRBP28702 MUTYH-205ENST00000372110 1809 ntTSL 1 (best) BASIC23.1■■□□□ 1.29
RXRBP28702 AC141586.3-201ENST00000562166 1838 ntBASIC23.1■■□□□ 1.29
RXRBP28702 FER1L4-211ENST00000616283 1818 ntTSL 1 (best) BASIC23.1■■□□□ 1.29
RXRBP28702 PIANP-204ENST00000540656 2432 ntAPPRIS P3 TSL 2 BASIC23.1■■□□□ 1.29
RXRBP28702 NRG3-201ENST00000372141 2158 ntAPPRIS P3 TSL 1 (best) BASIC23.1■■□□□ 1.29
RXRBP28702 SAAL1-201ENST00000300013 1518 ntAPPRIS ALT1 TSL 2 BASIC23.1■■□□□ 1.29
RXRBP28702 IFNL1-201ENST00000333625 857 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
RXRBP28702 ZNF81-201ENST00000334937 610 ntTSL 1 (best) BASIC23.1■■□□□ 1.29
RXRBP28702 ERAS-201ENST00000338270 1266 ntAPPRIS P1 BASIC23.1■■□□□ 1.29
RXRBP28702 MB-201ENST00000359787 1170 ntAPPRIS P1 TSL 2 BASIC23.1■■□□□ 1.29
RXRBP28702 DNAJC1-202ENST00000376980 2106 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
RXRBP28702 MB-202ENST00000397326 1197 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
RXRBP28702 MB-203ENST00000397328 1153 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
RXRBP28702 AC087276.3-201ENST00000526220 787 ntTSL 3 BASIC23.1■■□□□ 1.29
RXRBP28702 GATD1-206ENST00000526325 756 ntTSL 5 BASIC23.1■■□□□ 1.29
RXRBP28702 CLNS1A-210ENST00000528364 953 ntAPPRIS P1 TSL 3 BASIC23.1■■□□□ 1.29
RXRBP28702 ATXN2-AS-201ENST00000547021 485 ntTSL 2 BASIC23.1■■□□□ 1.29
RXRBP28702 IL32-232ENST00000552356 623 ntAPPRIS ALT2 TSL 3 BASIC23.1■■□□□ 1.29
RXRBP28702 AC106886.1-201ENST00000568660 600 ntBASIC23.1■■□□□ 1.29
RXRBP28702 TMEM261P1-201ENST00000604899 340 ntBASIC23.1■■□□□ 1.29
RXRBP28702 AC084121.4-201ENST00000641598 221 ntBASIC23.1■■□□□ 1.29
RXRBP28702 AF228730.8-201ENST00000642140 221 ntBASIC23.1■■□□□ 1.29
RXRBP28702 HLA-A-204ENST00000396634 1868 ntAPPRIS P1 BASIC23.1■■□□□ 1.29
RXRBP28702 GHRHR-205ENST00000409904 1613 ntTSL 1 (best) BASIC23.1■■□□□ 1.29
RXRBP28702 LGR4-201ENST00000379214 5206 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
RXRBP28702 NMRAL1-201ENST00000283429 1376 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
RXRBP28702 MARC2-202ENST00000366913 2134 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
RXRBP28702 MATN3-202ENST00000421259 1443 ntAPPRIS ALT2 TSL 1 (best) BASIC23.09■■□□□ 1.29
RXRBP28702 S1PR5-201ENST00000333430 2341 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
RXRBP28702 SOS2-201ENST00000216373 5498 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
RXRBP28702 SLC22A5-203ENST00000435065 1746 ntTSL 1 (best) BASIC23.09■■□□□ 1.29
RXRBP28702 SELENOM-202ENST00000402395 1054 ntAPPRIS P2 TSL 1 (best) BASIC23.09■■□□□ 1.29
RXRBP28702 CAPG-205ENST00000409921 1195 ntTSL 1 (best) BASIC23.09■■□□□ 1.29
RXRBP28702 AC008443.3-201ENST00000412295 549 ntTSL 4 BASIC23.09■■□□□ 1.29
RXRBP28702 AC009908.1-201ENST00000523030 412 ntTSL 3 BASIC23.09■■□□□ 1.29
RXRBP28702 AC092552.1-201ENST00000547243 906 ntBASIC23.09■■□□□ 1.29
RXRBP28702 BCS1L-212ENST00000439945 1483 ntAPPRIS P1 TSL 5 BASIC23.09■■□□□ 1.29
RXRBP28702 ITM2C-202ENST00000326427 2078 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
RXRBP28702 REXO1L6P-201ENST00000603433 1515 ntBASIC23.08■■□□□ 1.29
RXRBP28702 LUC7L-221ENST00000629543 1520 ntTSL 5 BASIC23.08■■□□□ 1.29
RXRBP28702 LINC01972-201ENST00000422271 553 ntTSL 3 BASIC23.08■■□□□ 1.29
RXRBP28702 TMEM247-204ENST00000434431 680 ntAPPRIS P1 TSL 5 BASIC23.08■■□□□ 1.29
RXRBP28702 RNASEK-203ENST00000549393 783 ntTSL 3 BASIC23.08■■□□□ 1.29
RXRBP28702 IL11-202ENST00000585513 1201 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
RXRBP28702 HDAC11-221ENST00000522202 1559 ntAPPRIS ALT2 TSL 2 BASIC23.08■■□□□ 1.29
RXRBP28702 ANXA3-201ENST00000264908 1657 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
RXRBP28702 GNAS-203ENST00000306120 1878 ntBASIC23.08■■□□□ 1.29
RXRBP28702 NCKAP1-201ENST00000360982 4989 ntTSL 1 (best) BASIC23.08■■□□□ 1.28
RXRBP28702 NEIL1-206ENST00000564784 2019 ntAPPRIS P1 TSL 2 BASIC23.08■■□□□ 1.28
RXRBP28702 BCL7A-201ENST00000261822 2581 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
RXRBP28702 MCMBP-202ENST00000369077 2465 ntAPPRIS ALT1 TSL 1 (best) BASIC23.07■■□□□ 1.28
RXRBP28702 SH2D3A-201ENST00000245908 2296 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
RXRBP28702 NDRG2-227ENST00000554143 1980 ntAPPRIS ALT1 TSL 2 BASIC23.07■■□□□ 1.28
RXRBP28702 AL512384.1-201ENST00000406683 331 ntBASIC23.07■■□□□ 1.28
RXRBP28702 ZNF589-204ENST00000440261 917 ntTSL 2 BASIC23.07■■□□□ 1.28
RXRBP28702 TMPRSS11CP-201ENST00000453277 683 ntBASIC23.07■■□□□ 1.28
RXRBP28702 AL606760.1-201ENST00000458151 1181 ntTSL 1 (best) BASIC23.07■■□□□ 1.28
RXRBP28702 NUTM2A-AS1-212ENST00000458739 733 ntTSL 1 (best) BASIC23.07■■□□□ 1.28
RXRBP28702 FAM177A1-207ENST00000554052 540 ntAPPRIS ALT2 TSL 2 BASIC23.07■■□□□ 1.28
RXRBP28702 AC140912.1-201ENST00000577171 1054 ntBASIC23.07■■□□□ 1.28
RXRBP28702 AC019129.2-201ENST00000609837 1235 ntBASIC23.07■■□□□ 1.28
RXRBP28702 COQ4-205ENST00000609948 956 ntTSL 2 BASIC23.07■■□□□ 1.28
RXRBP28702 EIF6-209ENST00000621148 1054 ntAPPRIS P1 TSL 3 BASIC23.07■■□□□ 1.28
RXRBP28702 SSH3-202ENST00000308298 2046 ntTSL 2 BASIC23.07■■□□□ 1.28
RXRBP28702 FAM110A-203ENST00000381939 1737 ntAPPRIS P1 TSL 3 BASIC23.07■■□□□ 1.28
RXRBP28702 GUCD1-203ENST00000404664 1606 ntTSL 2 BASIC23.07■■□□□ 1.28
RXRBP28702 NSDHL-203ENST00000440023 1630 ntAPPRIS P2 TSL 5 BASIC23.07■■□□□ 1.28
RXRBP28702 P2RX5-209ENST00000552276 1642 ntAPPRIS ALT2 TSL 5 BASIC23.07■■□□□ 1.28
RXRBP28702 SLC18A1-203ENST00000381608 1419 ntTSL 5 BASIC23.07■■□□□ 1.28
RXRBP28702 SEC61A2-201ENST00000298428 1893 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
RXRBP28702 ADRA1A-202ENST00000354550 1765 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
RXRBP28702 SH3RF3-201ENST00000309415 5803 ntAPPRIS P1 TSL 5 BASIC23.06■■□□□ 1.28
RXRBP28702 UBE2F-201ENST00000272930 2009 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
RXRBP28702 SLC11A2-208ENST00000546743 1740 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
RXRBP28702 DLEU7-201ENST00000400393 2092 ntAPPRIS P3 TSL 1 (best) BASIC23.06■■□□□ 1.28
Retrieved 100 of 98,524 protein–RNA pairs in 31.8 ms