Protein–RNA interactions for Protein: P19447

ERCC3, TFIIH basal transcription factor complex helicase XPB subunit, humanhuman

Predictions only

Length 782 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC3P19447 DPM3-201ENST00000341298 486 ntAPPRIS P1 TSL 2 BASIC20.6■□□□□ 0.89
ERCC3P19447 FAM99B-201ENST00000382166 1067 ntTSL 5 BASIC20.6■□□□□ 0.89
ERCC3P19447 GAR1-202ENST00000394631 1011 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
ERCC3P19447 ZNF655-215ENST00000440391 1198 ntTSL 2 BASIC20.6■□□□□ 0.89
ERCC3P19447 AC009567.1-201ENST00000515071 525 ntTSL 4 BASIC20.6■□□□□ 0.89
ERCC3P19447 CMC2-212ENST00000565650 671 ntAPPRIS P1 TSL 2 BASIC20.6■□□□□ 0.89
ERCC3P19447 CASP16P-202ENST00000575497 2161 ntTSL 2 BASIC20.6■□□□□ 0.89
ERCC3P19447 AGPAT3-201ENST00000291572 5546 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
ERCC3P19447 ASZ1-201ENST00000284629 1865 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
ERCC3P19447 PLAUR-201ENST00000221264 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
ERCC3P19447 SHANK3-203ENST00000445220 5175 ntAPPRIS ALT2 TSL 5 BASIC20.59■□□□□ 0.89
ERCC3P19447 CAMK1D-201ENST00000378845 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
ERCC3P19447 SIGLEC10-204ENST00000436984 1776 ntTSL 2 BASIC20.59■□□□□ 0.89
ERCC3P19447 DUS1L-202ENST00000354321 2151 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
ERCC3P19447 NKX2-1-203ENST00000518149 2583 ntAPPRIS P1 TSL 5 BASIC20.59■□□□□ 0.89
ERCC3P19447 ENTPD6-202ENST00000360031 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
ERCC3P19447 FAM110A-203ENST00000381939 1737 ntAPPRIS P1 TSL 3 BASIC20.59■□□□□ 0.89
ERCC3P19447 PRDM14-201ENST00000276594 2344 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
ERCC3P19447 TTC34-201ENST00000401095 8814 ntAPPRIS ALT2 TSL 5 BASIC20.59■□□□□ 0.89
ERCC3P19447 FAM213B-202ENST00000378425 2665 ntAPPRIS ALT2 TSL 2 BASIC20.59■□□□□ 0.89
ERCC3P19447 MZT1-201ENST00000377818 2299 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
ERCC3P19447 HOXA9-201ENST00000343483 2060 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
ERCC3P19447 CTNNBL1-204ENST00000405275 2076 ntTSL 5 BASIC20.59■□□□□ 0.89
ERCC3P19447 AC093627.4-201ENST00000484550 5008 ntTSL 2 BASIC20.59■□□□□ 0.89
ERCC3P19447 APOA4-201ENST00000357780 1473 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
ERCC3P19447 AC062028.1-203ENST00000447433 1472 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
ERCC3P19447 SMOX-204ENST00000346595 982 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
ERCC3P19447 HCCS-202ENST00000380762 1072 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
ERCC3P19447 AC131097.3-201ENST00000413820 1228 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
ERCC3P19447 IGHV3-22-201ENST00000520721 359 ntBASIC20.59■□□□□ 0.89
ERCC3P19447 ANAPC11-210ENST00000574924 722 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
ERCC3P19447 PNMT-203ENST00000581428 677 ntTSL 2 BASIC20.59■□□□□ 0.89
ERCC3P19447 AC132872.3-201ENST00000620937 629 ntTSL 5 BASIC20.59■□□□□ 0.89
ERCC3P19447 ADGRA3-202ENST00000334304 4566 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
ERCC3P19447 NFATC4-228ENST00000556759 2025 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
ERCC3P19447 FDXR-205ENST00000544854 1827 ntTSL 2 BASIC20.59■□□□□ 0.89
ERCC3P19447 SEC22C-202ENST00000273156 1608 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
ERCC3P19447 FOXI1-201ENST00000306268 1990 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
ERCC3P19447 UNC5B-201ENST00000335350 6841 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
ERCC3P19447 FDXR-217ENST00000582944 1766 ntTSL 2 BASIC20.59■□□□□ 0.89
ERCC3P19447 NRN1-204ENST00000622188 1795 ntTSL 2 BASIC20.59■□□□□ 0.89
ERCC3P19447 KDM4B-202ENST00000381759 3058 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
ERCC3P19447 LARP4-210ENST00000522085 1577 ntTSL 2 BASIC20.59■□□□□ 0.89
ERCC3P19447 COPS7A-215ENST00000543155 2127 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
ERCC3P19447 LGI4-201ENST00000310123 2814 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
ERCC3P19447 AC009041.2-206ENST00000563863 1728 ntTSL 2 BASIC20.58■□□□□ 0.89
ERCC3P19447 HYAL1-203ENST00000395143 1522 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
ERCC3P19447 TBX20-201ENST00000408931 1871 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
ERCC3P19447 ZNF446-203ENST00000594369 2238 ntAPPRIS P2 TSL 1 (best) BASIC20.58■□□□□ 0.89
ERCC3P19447 EHMT1-204ENST00000462484 2707 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
ERCC3P19447 AKT1S1-207ENST00000391835 3075 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
ERCC3P19447 GALNT2-201ENST00000366672 4454 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
ERCC3P19447 STRADB-202ENST00000392249 2190 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
ERCC3P19447 FDXR-214ENST00000581530 1827 ntAPPRIS P3 TSL 1 (best) BASIC20.58■□□□□ 0.89
ERCC3P19447 DYNC1LI2-202ENST00000440564 1145 ntTSL 2 BASIC20.58■□□□□ 0.89
ERCC3P19447 AL365226.1-201ENST00000448363 349 ntTSL 2 BASIC20.58■□□□□ 0.89
ERCC3P19447 AC234772.2-201ENST00000456532 375 ntTSL 3 BASIC20.58■□□□□ 0.89
ERCC3P19447 AC012640.2-201ENST00000561606 901 ntBASIC20.58■□□□□ 0.89
ERCC3P19447 AC104758.1-202ENST00000568184 602 ntTSL 3 BASIC20.58■□□□□ 0.89
ERCC3P19447 FAM71E1-202ENST00000595790 1225 ntAPPRIS P3 TSL 1 (best) BASIC20.58■□□□□ 0.89
ERCC3P19447 AC025062.2-201ENST00000605477 670 ntBASIC20.58■□□□□ 0.89
ERCC3P19447 AXIN2-208ENST00000611991 1019 ntTSL 5 BASIC20.58■□□□□ 0.89
ERCC3P19447 PSMA6-216ENST00000627895 484 ntTSL 5 BASIC20.58■□□□□ 0.89
ERCC3P19447 RNF146-201ENST00000309649 2624 ntAPPRIS P3 TSL 4 BASIC20.58■□□□□ 0.89
ERCC3P19447 GAS7-205ENST00000542249 1799 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
ERCC3P19447 AC104109.2-201ENST00000602919 1418 ntBASIC20.58■□□□□ 0.88
ERCC3P19447 PCDH1-201ENST00000287008 4793 ntAPPRIS P3 TSL 5 BASIC20.58■□□□□ 0.88
ERCC3P19447 PLEKHG5-212ENST00000537245 4794 ntAPPRIS ALT2 TSL 2 BASIC20.58■□□□□ 0.88
ERCC3P19447 CCZ1-207ENST00000628813 2218 ntTSL 2 BASIC20.58■□□□□ 0.88
ERCC3P19447 SLC9A6-201ENST00000370695 4725 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
ERCC3P19447 PANX1-201ENST00000227638 2769 ntAPPRIS P2 TSL 1 (best) BASIC20.57■□□□□ 0.88
ERCC3P19447 KLC1-217ENST00000554280 2426 ntTSL 5 BASIC20.57■□□□□ 0.88
ERCC3P19447 CLN3-216ENST00000565316 1318 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
ERCC3P19447 SYBU-201ENST00000276646 2870 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
ERCC3P19447 MAPKAP1-205ENST00000373503 3045 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
ERCC3P19447 NSUN5P2-201ENST00000388955 1789 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
ERCC3P19447 ADCK5-201ENST00000308860 1949 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
ERCC3P19447 HSPA1A-202ENST00000608703 1909 ntTSL 2 BASIC20.57■□□□□ 0.88
ERCC3P19447 POM121L12-201ENST00000408890 1283 ntAPPRIS P1 BASIC20.57■□□□□ 0.88
ERCC3P19447 RAB17-203ENST00000409576 466 ntTSL 3 BASIC20.57■□□□□ 0.88
ERCC3P19447 COX10-202ENST00000429152 875 ntTSL 2 BASIC20.57■□□□□ 0.88
ERCC3P19447 TSPY3-202ENST00000440483 414 ntTSL 5 BASIC20.57■□□□□ 0.88
ERCC3P19447 RELL2-202ENST00000444782 2154 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
ERCC3P19447 AP000344.1-201ENST00000454268 641 ntTSL 5 BASIC20.57■□□□□ 0.88
ERCC3P19447 AP000344.1-202ENST00000457193 586 ntTSL 4 BASIC20.57■□□□□ 0.88
ERCC3P19447 OR7E14P-202ENST00000530490 1290 ntBASIC20.57■□□□□ 0.88
ERCC3P19447 CD63-204ENST00000546939 779 ntTSL 3 BASIC20.57■□□□□ 0.88
ERCC3P19447 AC145285.3-201ENST00000564603 959 ntBASIC20.57■□□□□ 0.88
ERCC3P19447 SEC14L2-215ENST00000617837 2632 ntTSL 2 BASIC20.57■□□□□ 0.88
ERCC3P19447 PLEKHG5-206ENST00000377748 5221 ntAPPRIS ALT2 TSL 2 BASIC20.57■□□□□ 0.88
ERCC3P19447 AC008764.1-201ENST00000409035 2567 ntAPPRIS P1 TSL 2 BASIC20.57■□□□□ 0.88
ERCC3P19447 HTD2-201ENST00000461393 1508 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
ERCC3P19447 FBXO41-205ENST00000521871 7336 ntAPPRIS P1 TSL 5 BASIC20.57■□□□□ 0.88
ERCC3P19447 SLMAP-201ENST00000295951 5433 ntAPPRIS P1 TSL 5 BASIC20.57■□□□□ 0.88
ERCC3P19447 GTF2IRD2-207ENST00000625377 1910 ntTSL 5 BASIC20.57■□□□□ 0.88
ERCC3P19447 LIN28B-AS1-203ENST00000636682 1797 ntTSL 3 BASIC20.57■□□□□ 0.88
ERCC3P19447 HLA-J-201ENST00000462773 1622 ntBASIC20.56■□□□□ 0.88
ERCC3P19447 ASIC3-202ENST00000349064 1895 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
ERCC3P19447 ZNF131-206ENST00000505606 3209 ntAPPRIS P1 TSL 5 BASIC20.56■□□□□ 0.88
ERCC3P19447 TMEM132A-201ENST00000005286 3480 ntAPPRIS P3 TSL 5 BASIC20.56■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 27.3 ms