Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 ATP2A2-201ENST00000308664 4453 ntAPPRIS ALT1 TSL 1 (best) BASIC21.02■□□□□ 0.96
HMGB1P09429 HADHB-208ENST00000537713 2142 ntTSL 2 BASIC21.02■□□□□ 0.96
HMGB1P09429 EIF3C-211ENST00000566866 2986 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
HMGB1P09429 FLOT2-202ENST00000394908 2618 ntAPPRIS P3 TSL 1 (best) BASIC21.02■□□□□ 0.96
HMGB1P09429 THNSL2-203ENST00000377254 1560 ntTSL 2 BASIC21.02■□□□□ 0.95
HMGB1P09429 AL138688.1-201ENST00000624851 1594 ntBASIC21.02■□□□□ 0.95
HMGB1P09429 CHAC1-202ENST00000446533 1849 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
HMGB1P09429 LINC01554-202ENST00000436592 2052 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
HMGB1P09429 RBBP7-203ENST00000380087 2333 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
HMGB1P09429 CD151-203ENST00000397421 1486 ntAPPRIS P2 TSL 1 (best) BASIC21.01■□□□□ 0.95
HMGB1P09429 BAGE2-202ENST00000474011 1482 ntTSL 2 BASIC21.01■□□□□ 0.95
HMGB1P09429 RNF144A-201ENST00000320892 5743 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
HMGB1P09429 MB21D2-201ENST00000392452 3368 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
HMGB1P09429 MRPS34-201ENST00000177742 1040 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
HMGB1P09429 AURKAIP1-202ENST00000338338 1047 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
HMGB1P09429 RPL8-202ENST00000394920 965 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
HMGB1P09429 RNF216P1-205ENST00000406089 807 ntTSL 5 BASIC21.01■□□□□ 0.95
HMGB1P09429 PDZD7-203ENST00000470414 1057 ntTSL 2 BASIC21.01■□□□□ 0.95
HMGB1P09429 NAPSB-203ENST00000531692 561 ntTSL 2 BASIC21.01■□□□□ 0.95
HMGB1P09429 SPAG7-207ENST00000575142 1094 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
HMGB1P09429 GEMIN7-203ENST00000591607 848 ntAPPRIS P1 TSL 3 BASIC21.01■□□□□ 0.95
HMGB1P09429 AL121672.3-201ENST00000608644 468 ntBASIC21.01■□□□□ 0.95
HMGB1P09429 AC124864.1-201ENST00000623408 392 ntBASIC21.01■□□□□ 0.95
HMGB1P09429 CALM2-209ENST00000628793 1103 ntTSL 5 BASIC21.01■□□□□ 0.95
HMGB1P09429 CLK2-202ENST00000361168 1934 ntAPPRIS P3 TSL 1 (best) BASIC21.01■□□□□ 0.95
HMGB1P09429 GNE-201ENST00000377902 2565 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
HMGB1P09429 ZNF140-207ENST00000440550 1663 ntTSL 2 BASIC21.01■□□□□ 0.95
HMGB1P09429 OXSR1-201ENST00000311806 4553 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
HMGB1P09429 NFKBID-210ENST00000606253 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
HMGB1P09429 TRAPPC12-201ENST00000324266 2508 ntAPPRIS P2 TSL 1 (best) BASIC21.01■□□□□ 0.95
HMGB1P09429 CCDC78-201ENST00000293889 1611 ntAPPRIS P2 TSL 1 (best) BASIC21■□□□□ 0.95
HMGB1P09429 NIPAL2-202ENST00000430223 4496 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
HMGB1P09429 TOM1L2-203ENST00000395739 1766 ntTSL 2 BASIC21■□□□□ 0.95
HMGB1P09429 PFDN6-206ENST00000463584 1915 ntTSL 3 BASIC21■□□□□ 0.95
HMGB1P09429 CSF3-206ENST00000577675 1360 ntTSL 1 (best) BASIC21■□□□□ 0.95
HMGB1P09429 COL18A1-202ENST00000355480 5924 ntAPPRIS P3 TSL 1 (best) BASIC21■□□□□ 0.95
HMGB1P09429 ALG3-201ENST00000397676 1528 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
HMGB1P09429 MRPS5-201ENST00000272418 1652 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
HMGB1P09429 RNF2-201ENST00000367509 1677 ntTSL 2 BASIC21■□□□□ 0.95
HMGB1P09429 FXN-203ENST00000396366 922 ntTSL 2 BASIC21■□□□□ 0.95
HMGB1P09429 AC005104.2-201ENST00000427818 678 ntBASIC21■□□□□ 0.95
HMGB1P09429 LINC01770-202ENST00000430109 510 ntTSL 3 BASIC21■□□□□ 0.95
HMGB1P09429 LINC01128-207ENST00000449005 874 ntTSL 1 (best) BASIC21■□□□□ 0.95
HMGB1P09429 BX276092.5-203ENST00000456199 560 ntBASIC21■□□□□ 0.95
HMGB1P09429 AC008429.1-203ENST00000518894 548 ntTSL 4 BASIC21■□□□□ 0.95
HMGB1P09429 AC087388.1-201ENST00000571370 1112 ntBASIC21■□□□□ 0.95
HMGB1P09429 DBP-204ENST00000599385 709 ntTSL 3 BASIC21■□□□□ 0.95
HMGB1P09429 AC116407.4-201ENST00000623319 1061 ntBASIC21■□□□□ 0.95
HMGB1P09429 AL365255.1-201ENST00000637702 847 ntTSL 2 BASIC21■□□□□ 0.95
HMGB1P09429 PAK4-201ENST00000321944 2555 ntTSL 1 (best) BASIC21■□□□□ 0.95
HMGB1P09429 PP7080-201ENST00000342584 1876 ntTSL 1 (best) BASIC21■□□□□ 0.95
HMGB1P09429 ARFGAP2-229ENST00000627920 2613 ntTSL 2 BASIC21■□□□□ 0.95
HMGB1P09429 NGLY1-207ENST00000428257 2534 ntTSL 1 (best) BASIC21■□□□□ 0.95
HMGB1P09429 EML3-217ENST00000531557 2509 ntTSL 5 BASIC21■□□□□ 0.95
HMGB1P09429 CDK11A-203ENST00000357760 2446 ntAPPRIS ALT1 TSL 1 (best) BASIC20.99■□□□□ 0.95
HMGB1P09429 CDK11A-204ENST00000358779 2419 ntAPPRIS ALT1 TSL 1 (best) BASIC20.99■□□□□ 0.95
HMGB1P09429 CDK11A-206ENST00000378638 2429 ntTSL 5 BASIC20.99■□□□□ 0.95
HMGB1P09429 CDK11A-208ENST00000404249 2449 ntAPPRIS P4 TSL 1 (best) BASIC20.99■□□□□ 0.95
HMGB1P09429 CMIP-209ENST00000566513 2288 ntTSL 5 BASIC20.99■□□□□ 0.95
HMGB1P09429 ARPIN-202ENST00000460685 2145 ntTSL 2 BASIC20.99■□□□□ 0.95
HMGB1P09429 LRRFIP2-209ENST00000440230 1989 ntTSL 5 BASIC20.99■□□□□ 0.95
HMGB1P09429 KIZ-211ENST00000619574 1971 ntAPPRIS ALT2 TSL 2 BASIC20.99■□□□□ 0.95
HMGB1P09429 NGFR-202ENST00000504201 1840 ntTSL 2 BASIC20.99■□□□□ 0.95
HMGB1P09429 INF2-204ENST00000398337 1689 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
HMGB1P09429 MSC-201ENST00000325509 2023 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
HMGB1P09429 GINS4-206ENST00000520710 2022 ntTSL 2 BASIC20.99■□□□□ 0.95
HMGB1P09429 PACRGL-203ENST00000444671 1720 ntTSL 2 BASIC20.99■□□□□ 0.95
HMGB1P09429 ZNF133-212ENST00000622607 2660 ntAPPRIS ALT2 TSL 4 BASIC20.99■□□□□ 0.95
HMGB1P09429 PTPA-223ENST00000452489 2526 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
HMGB1P09429 ENC1-201ENST00000302351 5520 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
HMGB1P09429 TMEM88-201ENST00000301599 875 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
HMGB1P09429 C1QC-203ENST00000374640 1163 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
HMGB1P09429 AC093734.1-201ENST00000416100 242 ntTSL 3 BASIC20.99■□□□□ 0.95
HMGB1P09429 DYDC2-206ENST00000444807 1173 ntAPPRIS P3 TSL 3 BASIC20.99■□□□□ 0.95
HMGB1P09429 DCTPP1-204ENST00000568434 853 ntTSL 2 BASIC20.99■□□□□ 0.95
HMGB1P09429 AC012645.3-201ENST00000568506 470 ntTSL 3 BASIC20.99■□□□□ 0.95
HMGB1P09429 AC104971.2-201ENST00000588144 1209 ntTSL 2 BASIC20.99■□□□□ 0.95
HMGB1P09429 CMTM3-214ENST00000567572 1934 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
HMGB1P09429 CHEK2-202ENST00000348295 1771 ntTSL 5 BASIC20.99■□□□□ 0.95
HMGB1P09429 NSUN5P2-205ENST00000602348 1776 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
HMGB1P09429 IL34-201ENST00000288098 1607 ntAPPRIS P2 TSL 1 (best) BASIC20.99■□□□□ 0.95
HMGB1P09429 ELN-202ENST00000320399 2274 ntAPPRIS ALT2 TSL 5 BASIC20.99■□□□□ 0.95
HMGB1P09429 OPRK1-202ENST00000520287 1602 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
HMGB1P09429 AMACR-205ENST00000426255 1316 ntTSL 2 BASIC20.99■□□□□ 0.95
HMGB1P09429 SPC24-206ENST00000592540 2315 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
HMGB1P09429 WWP1-202ENST00000517970 4686 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
HMGB1P09429 AL034417.2-201ENST00000445300 2044 ntTSL 2 BASIC20.99■□□□□ 0.95
HMGB1P09429 TAB2-209ENST00000637181 4230 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
HMGB1P09429 RUSC1-214ENST00000490373 1700 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
HMGB1P09429 FAM124A-202ENST00000322475 4761 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
HMGB1P09429 SLC7A9-204ENST00000590341 1752 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
HMGB1P09429 SVOPL-204ENST00000436657 1420 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
HMGB1P09429 E2F2-201ENST00000361729 5191 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
HMGB1P09429 ZNF517-201ENST00000359971 2335 ntAPPRIS P1 TSL 4 BASIC20.98■□□□□ 0.95
HMGB1P09429 HSF2-201ENST00000368455 2549 ntAPPRIS P3 TSL 1 (best) BASIC20.98■□□□□ 0.95
HMGB1P09429 ADORA2A-213ENST00000610595 2736 ntAPPRIS P1 TSL 2 BASIC20.98■□□□□ 0.95
HMGB1P09429 HSD17B10-201ENST00000168216 960 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
HMGB1P09429 KLK12-201ENST00000250351 882 ntAPPRIS P4 TSL 5 BASIC20.98■□□□□ 0.95
HMGB1P09429 KLK12-202ENST00000319590 1074 ntAPPRIS ALT2 TSL 5 BASIC20.98■□□□□ 0.95
HMGB1P09429 BET1L-202ENST00000332865 533 ntTSL 5 BASIC20.98■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 40.4 ms