Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 PDLIM4-202ENST00000379018 1006 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
LMX1BO60663 ATP5G2P1-201ENST00000433580 426 ntBASIC15.69■□□□□ 0.1
LMX1BO60663 GCSHP2-201ENST00000560971 527 ntBASIC15.69■□□□□ 0.1
LMX1BO60663 TMEM220-AS1-201ENST00000579114 575 ntTSL 4 BASIC15.69■□□□□ 0.1
LMX1BO60663 BIRC5-207ENST00000590449 568 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
LMX1BO60663 AC064834.1-201ENST00000606986 503 ntTSL 3 BASIC15.69■□□□□ 0.1
LMX1BO60663 AC024243.1-201ENST00000609234 778 ntBASIC15.69■□□□□ 0.1
LMX1BO60663 BSCL2-201ENST00000278893 1364 ntAPPRIS ALT2 TSL 2 BASIC15.69■□□□□ 0.1
LMX1BO60663 SPATC1L-201ENST00000291672 2303 ntAPPRIS P1 TSL 2 BASIC15.69■□□□□ 0.1
LMX1BO60663 GPAT3-202ENST00000395226 2631 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
LMX1BO60663 WIPI1-202ENST00000546360 1575 ntTSL 2 BASIC15.69■□□□□ 0.1
LMX1BO60663 MAP4K2-202ENST00000377350 2931 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
LMX1BO60663 TCTN1-229ENST00000614115 1965 ntTSL 5 BASIC15.69■□□□□ 0.1
LMX1BO60663 DDX51-202ENST00000397333 4718 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
LMX1BO60663 MMAB-204ENST00000537236 1342 ntTSL 3 BASIC15.68■□□□□ 0.1
LMX1BO60663 ZNF667-AS1-201ENST00000585445 1521 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
LMX1BO60663 AZU1-202ENST00000592205 1713 ntTSL 2 BASIC15.68■□□□□ 0.1
LMX1BO60663 OSR2-201ENST00000297565 1838 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
LMX1BO60663 CHAC1-202ENST00000446533 1849 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
LMX1BO60663 ARSA-204ENST00000395621 1918 ntAPPRIS P1 TSL 2 BASIC15.68■□□□□ 0.1
LMX1BO60663 CTSB-204ENST00000453527 2011 ntAPPRIS P1 TSL 2 BASIC15.68■□□□□ 0.1
LMX1BO60663 NRP1-204ENST00000374822 2213 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
LMX1BO60663 MAPK11-201ENST00000330651 2431 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
LMX1BO60663 SPECC1-203ENST00000395525 2536 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
LMX1BO60663 AL355312.1-201ENST00000407115 2176 ntBASIC15.68■□□□□ 0.1
LMX1BO60663 RAB11FIP2-202ENST00000369199 6119 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
LMX1BO60663 AC105285.1-202ENST00000499322 1866 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
LMX1BO60663 EFR3A-201ENST00000254624 5438 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
LMX1BO60663 SEMA3B-202ENST00000418576 1765 ntTSL 2 BASIC15.68■□□□□ 0.1
LMX1BO60663 RNF2-201ENST00000367509 1677 ntTSL 2 BASIC15.68■□□□□ 0.1
LMX1BO60663 ATP2A3-201ENST00000309890 4826 ntTSL 5 BASIC15.68■□□□□ 0.1
LMX1BO60663 LUC7L-201ENST00000293872 1456 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
LMX1BO60663 CLN3-202ENST00000355477 1173 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
LMX1BO60663 TBC1D7-202ENST00000356436 1116 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
LMX1BO60663 MRPL24-202ENST00000368211 883 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
LMX1BO60663 TBC1D7-204ENST00000379300 1276 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
LMX1BO60663 SPEG-204ENST00000396689 1274 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
LMX1BO60663 HDAC11-204ENST00000404040 967 ntTSL 3 BASIC15.68■□□□□ 0.1
LMX1BO60663 BECN2-201ENST00000419583 1296 ntAPPRIS P1 BASIC15.68■□□□□ 0.1
LMX1BO60663 RNF144A-AS1-205ENST00000439208 757 ntTSL 3 BASIC15.68■□□□□ 0.1
LMX1BO60663 AL445472.1-201ENST00000452532 1007 ntTSL 2 BASIC15.68■□□□□ 0.1
LMX1BO60663 PGAP2-206ENST00000459679 795 ntTSL 2 BASIC15.68■□□□□ 0.1
LMX1BO60663 SEC1P-202ENST00000473944 940 ntBASIC15.68■□□□□ 0.1
LMX1BO60663 AC008825.1-201ENST00000504398 452 ntTSL 3 BASIC15.68■□□□□ 0.1
LMX1BO60663 CNTD2-203ENST00000513948 787 ntAPPRIS ALT2 TSL 2 BASIC15.68■□□□□ 0.1
LMX1BO60663 TMEM135-209ENST00000532959 1149 ntTSL 2 BASIC15.68■□□□□ 0.1
LMX1BO60663 AC011773.3-202ENST00000549291 790 ntTSL 3 BASIC15.68■□□□□ 0.1
LMX1BO60663 FGF14-AS2-201ENST00000606448 1074 ntBASIC15.68■□□□□ 0.1
LMX1BO60663 BCL10-202ENST00000620248 774 ntTSL 5 BASIC15.68■□□□□ 0.1
LMX1BO60663 AC012313.10-201ENST00000623509 926 ntBASIC15.68■□□□□ 0.1
LMX1BO60663 STK10-201ENST00000176763 6060 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
LMX1BO60663 DAG1-219ENST00000538711 5582 ntAPPRIS P1 TSL 5 BASIC15.68■□□□□ 0.1
LMX1BO60663 ADIRF-AS1-201ENST00000418273 2627 ntTSL 3 BASIC15.68■□□□□ 0.1
LMX1BO60663 LINC00683-201ENST00000578803 2221 ntTSL 2 BASIC15.68■□□□□ 0.1
LMX1BO60663 ARID1B-203ENST00000350026 7962 ntAPPRIS P3 TSL 1 (best) BASIC15.68■□□□□ 0.1
LMX1BO60663 UBE2I-207ENST00000406620 1842 ntAPPRIS P1 TSL 2 BASIC15.68■□□□□ 0.1
LMX1BO60663 RBM15B-201ENST00000563281 6641 ntAPPRIS P1 BASIC15.68■□□□□ 0.1
LMX1BO60663 ICA1-208ENST00000407906 1615 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
LMX1BO60663 DOCK7-203ENST00000404627 2678 ntTSL 2 BASIC15.68■□□□□ 0.1
LMX1BO60663 CAP2-208ENST00000611958 2686 ntTSL 2 BASIC15.68■□□□□ 0.1
LMX1BO60663 ASL-204ENST00000395331 1538 ntTSL 5 BASIC15.68■□□□□ 0.1
LMX1BO60663 FBXO33-201ENST00000298097 3853 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
LMX1BO60663 CHRNA4-201ENST00000370263 5577 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
LMX1BO60663 NRBP2-202ENST00000442628 3587 ntAPPRIS P1 TSL 2 BASIC15.67■□□□□ 0.1
LMX1BO60663 TMEM216-203ENST00000515837 1958 ntAPPRIS P2 TSL 2 BASIC15.67■□□□□ 0.1
LMX1BO60663 TSKS-201ENST00000246801 1883 ntAPPRIS P2 TSL 1 (best) BASIC15.67■□□□□ 0.1
LMX1BO60663 PP7080-201ENST00000342584 1876 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
LMX1BO60663 KRT13-201ENST00000246635 1699 ntAPPRIS P4 TSL 1 (best) BASIC15.67■□□□□ 0.1
LMX1BO60663 MYOZ3-203ENST00000517768 1451 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
LMX1BO60663 NR2E1-202ENST00000368986 3212 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
LMX1BO60663 EMILIN3-201ENST00000332312 3796 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
LMX1BO60663 GLRB-201ENST00000264428 3126 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
LMX1BO60663 WT1-201ENST00000332351 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
LMX1BO60663 AANAT-201ENST00000250615 1913 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
LMX1BO60663 CMTM3-214ENST00000567572 1934 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
LMX1BO60663 TLE2-219ENST00000591529 2483 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
LMX1BO60663 MAGED2-213ENST00000627068 1811 ntAPPRIS ALT2 TSL 5 BASIC15.67■□□□□ 0.1
LMX1BO60663 INS-201ENST00000250971 503 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
LMX1BO60663 PAFAH1B3-201ENST00000262890 1003 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
LMX1BO60663 CD1E-211ENST00000368166 1271 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
LMX1BO60663 GAD2-202ENST00000376248 680 ntTSL 5 BASIC15.67■□□□□ 0.1
LMX1BO60663 DHRS4-203ENST00000397075 727 ntTSL 2 BASIC15.67■□□□□ 0.1
LMX1BO60663 TNFRSF10C-202ENST00000397703 1242 ntTSL 2 BASIC15.67■□□□□ 0.1
LMX1BO60663 MPG-203ENST00000397817 1039 ntAPPRIS ALT2 TSL 2 BASIC15.67■□□□□ 0.1
LMX1BO60663 AC021739.3-201ENST00000557908 855 ntTSL 2 BASIC15.67■□□□□ 0.1
LMX1BO60663 HYMAI.1-201ENST00000620949 238 ntBASIC15.67■□□□□ 0.1
LMX1BO60663 ILKAP-212ENST00000622223 1088 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
LMX1BO60663 CHRNA5-201ENST00000299565 3623 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
LMX1BO60663 RAB40C-205ENST00000539661 2609 ntAPPRIS P1 TSL 3 BASIC15.67■□□□□ 0.1
LMX1BO60663 MTMR1-208ENST00000445323 4516 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
LMX1BO60663 HOXA-AS3-205ENST00000524304 2063 ntTSL 2 BASIC15.67■□□□□ 0.1
LMX1BO60663 LRRFIP2-209ENST00000440230 1989 ntTSL 5 BASIC15.67■□□□□ 0.1
LMX1BO60663 PLPP4-202ENST00000398250 1521 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
LMX1BO60663 NCF1B-201ENST00000423083 1516 ntTSL 2 BASIC15.67■□□□□ 0.1
LMX1BO60663 KIAA1522-204ENST00000401073 5438 ntAPPRIS P3 TSL 2 BASIC15.67■□□□□ 0.1
LMX1BO60663 JMJD4-201ENST00000366758 2595 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
LMX1BO60663 HARS-201ENST00000307633 1780 ntTSL 2 BASIC15.67■□□□□ 0.1
LMX1BO60663 SELENOF-201ENST00000331835 1781 ntAPPRIS P2 TSL 1 (best) BASIC15.67■□□□□ 0.1
LMX1BO60663 SCHIP1-205ENST00000482804 1799 ntTSL 5 BASIC15.67■□□□□ 0.1
LMX1BO60663 SOWAHC-201ENST00000356454 4657 ntAPPRIS P1 BASIC15.67■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 51.5 ms