Protein–RNA interactions for Protein: A6NKF7

TMEM88B, Transmembrane protein 88B, humanhuman

Predictions only

Length 163 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM88BA6NKF7 IRX5-202ENST00000394636 2401 ntAPPRIS P3 TSL 3 BASIC20.56■□□□□ 0.88
TMEM88BA6NKF7 KDM3B-201ENST00000314358 6813 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
TMEM88BA6NKF7 AIPL1-209ENST00000575265 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
TMEM88BA6NKF7 UBE2J2-201ENST00000347370 2387 ntTSL 3 BASIC20.56■□□□□ 0.88
TMEM88BA6NKF7 LTBP3-201ENST00000301873 4443 ntAPPRIS ALT2 TSL 2 BASIC20.56■□□□□ 0.88
TMEM88BA6NKF7 C2orf81-201ENST00000290390 2227 ntAPPRIS P5 TSL 5 BASIC20.55■□□□□ 0.88
TMEM88BA6NKF7 EIF2B1-201ENST00000424014 2477 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
TMEM88BA6NKF7 CLIP3-206ENST00000593074 2080 ntAPPRIS P1 TSL 2 BASIC20.55■□□□□ 0.88
TMEM88BA6NKF7 EEF1A1-203ENST00000331523 1923 ntAPPRIS P1 TSL 5 BASIC20.55■□□□□ 0.88
TMEM88BA6NKF7 DRD2-202ENST00000362072 2789 ntAPPRIS P2 TSL 1 (best) BASIC20.55■□□□□ 0.88
TMEM88BA6NKF7 SRP19-201ENST00000282999 937 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
TMEM88BA6NKF7 NAA10-201ENST00000370009 837 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
TMEM88BA6NKF7 NAA10-203ENST00000370015 1002 ntTSL 5 BASIC20.55■□□□□ 0.88
TMEM88BA6NKF7 TNNC2-201ENST00000372555 710 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
TMEM88BA6NKF7 TNNC2-202ENST00000372557 780 ntTSL 3 BASIC20.55■□□□□ 0.88
TMEM88BA6NKF7 C9orf24-204ENST00000379127 596 ntTSL 3 BASIC20.55■□□□□ 0.88
TMEM88BA6NKF7 YDJC-202ENST00000398873 1066 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
TMEM88BA6NKF7 PLAC9P1-202ENST00000433290 400 ntTSL 2 BASIC20.55■□□□□ 0.88
TMEM88BA6NKF7 SNCA-209ENST00000506244 570 ntAPPRIS P1 TSL 2 BASIC20.55■□□□□ 0.88
TMEM88BA6NKF7 CCDC25-209ENST00000522915 785 ntTSL 3 BASIC20.55■□□□□ 0.88
TMEM88BA6NKF7 MTFR1L-218ENST00000526894 733 ntTSL 4 BASIC20.55■□□□□ 0.88
TMEM88BA6NKF7 WASHC3-213ENST00000545679 865 ntTSL 2 BASIC20.55■□□□□ 0.88
TMEM88BA6NKF7 ZNF606-202ENST00000546715 636 ntTSL 4 BASIC20.55■□□□□ 0.88
TMEM88BA6NKF7 MZF1-202ENST00000594108 1110 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
TMEM88BA6NKF7 SIGLEC7-205ENST00000600577 616 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
TMEM88BA6NKF7 KLC1-219ENST00000555836 2467 ntTSL 5 BASIC20.55■□□□□ 0.88
TMEM88BA6NKF7 CORO1A-216ENST00000570045 1622 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
TMEM88BA6NKF7 DGKQ-201ENST00000273814 4636 ntAPPRIS P2 TSL 1 (best) BASIC20.55■□□□□ 0.88
TMEM88BA6NKF7 CLDN6-201ENST00000328796 1369 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
TMEM88BA6NKF7 FDXR-203ENST00000420580 1705 ntTSL 2 BASIC20.55■□□□□ 0.88
TMEM88BA6NKF7 TRAPPC5-204ENST00000596148 5498 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
TMEM88BA6NKF7 EFHD1-201ENST00000264059 2259 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
TMEM88BA6NKF7 T-202ENST00000366871 2250 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
TMEM88BA6NKF7 NR2C1-219ENST00000622476 1561 ntTSL 5 BASIC20.55■□□□□ 0.88
TMEM88BA6NKF7 RELA-202ENST00000406246 2700 ntAPPRIS P3 TSL 1 (best) BASIC20.55■□□□□ 0.88
TMEM88BA6NKF7 LRRC43-201ENST00000339777 2028 ntAPPRIS P2 TSL 5 BASIC20.54■□□□□ 0.88
TMEM88BA6NKF7 C12orf40-202ENST00000405531 1656 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
TMEM88BA6NKF7 CEACAM16-202ENST00000587331 1692 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
TMEM88BA6NKF7 ELP5-201ENST00000354429 1304 ntAPPRIS P2 TSL 5 BASIC20.54■□□□□ 0.88
TMEM88BA6NKF7 IGLL5-203ENST00000532223 1335 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
TMEM88BA6NKF7 CETN1-201ENST00000327228 1758 ntAPPRIS P1 BASIC20.54■□□□□ 0.88
TMEM88BA6NKF7 DNAJC28-204ENST00000617313 2237 ntAPPRIS P1 TSL 5 BASIC20.54■□□□□ 0.88
TMEM88BA6NKF7 OLA1-204ENST00000409546 2071 ntTSL 5 BASIC20.54■□□□□ 0.88
TMEM88BA6NKF7 SNAI3-AS1-205ENST00000568633 2096 ntBASIC20.54■□□□□ 0.88
TMEM88BA6NKF7 SEL1L-204ENST00000555824 1631 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
TMEM88BA6NKF7 MYBL2-201ENST00000217026 2639 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
TMEM88BA6NKF7 MYCN-201ENST00000281043 2602 ntAPPRIS P1 TSL 5 BASIC20.54■□□□□ 0.88
TMEM88BA6NKF7 CLDND1-203ENST00000394181 2170 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
TMEM88BA6NKF7 AP3S1-201ENST00000316788 1730 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
TMEM88BA6NKF7 C12orf10-201ENST00000267103 1192 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
TMEM88BA6NKF7 CD99L2-202ENST00000355149 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
TMEM88BA6NKF7 C6orf52-202ENST00000379586 430 ntAPPRIS ALT2 TSL 2 BASIC20.54■□□□□ 0.88
TMEM88BA6NKF7 ZC3H12D-202ENST00000409948 753 ntTSL 3 BASIC20.54■□□□□ 0.88
TMEM88BA6NKF7 ITPR1-AS1-201ENST00000412804 858 ntTSL 2 BASIC20.54■□□□□ 0.88
TMEM88BA6NKF7 TMEM205-202ENST00000447337 916 ntAPPRIS P1 TSL 2 BASIC20.54■□□□□ 0.88
TMEM88BA6NKF7 AC108047.1-201ENST00000457407 404 ntTSL 2 BASIC20.54■□□□□ 0.88
TMEM88BA6NKF7 LINC00595-207ENST00000476909 792 ntTSL 2 BASIC20.54■□□□□ 0.88
TMEM88BA6NKF7 AC069120.2-201ENST00000524091 540 ntBASIC20.54■□□□□ 0.88
TMEM88BA6NKF7 RPL28-209ENST00000560055 670 ntTSL 3 BASIC20.54■□□□□ 0.88
TMEM88BA6NKF7 AC243562.1-201ENST00000560672 389 ntBASIC20.54■□□□□ 0.88
TMEM88BA6NKF7 AC243571.2-201ENST00000615265 628 ntTSL 3 BASIC20.54■□□□□ 0.88
TMEM88BA6NKF7 LRRC23-215ENST00000622489 1061 ntTSL 5 BASIC20.54■□□□□ 0.88
TMEM88BA6NKF7 NPNT-214ENST00000514622 2362 ntTSL 2 BASIC20.54■□□□□ 0.88
TMEM88BA6NKF7 ITGBL1-206ENST00000618057 2368 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
TMEM88BA6NKF7 FAM193B-217ENST00000514747 2913 ntAPPRIS P1 TSL 5 BASIC20.54■□□□□ 0.88
TMEM88BA6NKF7 TDG-209ENST00000544861 1387 ntTSL 2 BASIC20.54■□□□□ 0.88
TMEM88BA6NKF7 CREB3L3-204ENST00000602147 1382 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
TMEM88BA6NKF7 C7orf43-206ENST00000456769 2046 ntTSL 2 BASIC20.54■□□□□ 0.88
TMEM88BA6NKF7 GPAT2P1-202ENST00000471661 1569 ntTSL 2 BASIC20.54■□□□□ 0.88
TMEM88BA6NKF7 DNAAF4-201ENST00000321149 1993 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
TMEM88BA6NKF7 PLD3-205ENST00000409419 1966 ntAPPRIS P1 TSL 5 BASIC20.54■□□□□ 0.88
TMEM88BA6NKF7 INSM1-201ENST00000310227 2829 ntAPPRIS P1 BASIC20.54■□□□□ 0.88
TMEM88BA6NKF7 MROH1-202ENST00000423230 1712 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
TMEM88BA6NKF7 HOXC10-201ENST00000303460 1936 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
TMEM88BA6NKF7 CCDC7-203ENST00000362006 2133 ntAPPRIS P2 TSL 1 (best) BASIC20.53■□□□□ 0.88
TMEM88BA6NKF7 MAGI2-212ENST00000626691 4599 ntTSL 5 BASIC20.53■□□□□ 0.88
TMEM88BA6NKF7 AIP-201ENST00000279146 1221 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
TMEM88BA6NKF7 GPR162-202ENST00000382315 1150 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
TMEM88BA6NKF7 AL365255.1-202ENST00000413887 363 ntTSL 5 BASIC20.53■□□□□ 0.88
TMEM88BA6NKF7 SPDYE7P-202ENST00000420373 878 ntBASIC20.53■□□□□ 0.88
TMEM88BA6NKF7 LINC00982-205ENST00000420957 435 ntBASIC20.53■□□□□ 0.88
TMEM88BA6NKF7 SPDYE2-202ENST00000432940 1209 ntAPPRIS P2 TSL 1 (best) BASIC20.53■□□□□ 0.88
TMEM88BA6NKF7 SPDYE2B-201ENST00000436228 1209 ntAPPRIS P2 TSL 1 (best) BASIC20.53■□□□□ 0.88
TMEM88BA6NKF7 AL357497.1-201ENST00000436249 666 ntTSL 3 BASIC20.53■□□□□ 0.88
TMEM88BA6NKF7 MACROD2-AS1-202ENST00000455291 663 ntTSL 2 BASIC20.53■□□□□ 0.88
TMEM88BA6NKF7 SPDYE5-201ENST00000455862 1209 ntAPPRIS P2 TSL 1 (best) BASIC20.53■□□□□ 0.88
TMEM88BA6NKF7 INS-205ENST00000512523 297 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
TMEM88BA6NKF7 LEPROTL1-203ENST00000518001 589 ntTSL 4 BASIC20.53■□□□□ 0.88
TMEM88BA6NKF7 ZNF576-206ENST00000533118 867 ntAPPRIS P1 TSL 2 BASIC20.53■□□□□ 0.88
TMEM88BA6NKF7 LINC01089-211ENST00000543334 1282 ntTSL 4 BASIC20.53■□□□□ 0.88
TMEM88BA6NKF7 VAT1-205ENST00000587173 1174 ntTSL 2 BASIC20.53■□□□□ 0.88
TMEM88BA6NKF7 ACTL9-202ENST00000612068 1252 ntBASIC20.53■□□□□ 0.88
TMEM88BA6NKF7 AC009118.2-201ENST00000613275 655 ntBASIC20.53■□□□□ 0.88
TMEM88BA6NKF7 AC125437.2-201ENST00000625180 2167 ntBASIC20.53■□□□□ 0.88
TMEM88BA6NKF7 RELB-201ENST00000221452 2294 ntAPPRIS P2 TSL 1 (best) BASIC20.53■□□□□ 0.88
TMEM88BA6NKF7 THEM6-201ENST00000336138 2259 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
TMEM88BA6NKF7 SPATA5L1-201ENST00000305560 2570 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
TMEM88BA6NKF7 TEAD2-202ENST00000377214 2440 ntAPPRIS ALT1 TSL 2 BASIC20.53■□□□□ 0.88
TMEM88BA6NKF7 PLEKHA2-206ENST00000521746 2127 ntTSL 5 BASIC20.53■□□□□ 0.88
TMEM88BA6NKF7 ADCK5-201ENST00000308860 1949 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 58.5 ms