Protein–RNA interactions for Protein: Q9Y6I4

USP3, Ubiquitin carboxyl-terminal hydrolase 3, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP3Q9Y6I4 SLC16A5-203ENST00000538213 1842 ntAPPRIS ALT2 TSL 2 BASIC18.63■□□□□ 0.57
USP3Q9Y6I4 KRT16P6-201ENST00000417510 1873 ntTSL 5 BASIC18.63■□□□□ 0.57
USP3Q9Y6I4 KIFC3-201ENST00000379655 3427 ntAPPRIS P3 TSL 1 (best) BASIC18.62■□□□□ 0.57
USP3Q9Y6I4 MARK4-210ENST00000620044 2105 ntTSL 5 BASIC18.62■□□□□ 0.57
USP3Q9Y6I4 FXYD6-204ENST00000526014 2171 ntAPPRIS P2 TSL 1 (best) BASIC18.62■□□□□ 0.57
USP3Q9Y6I4 KCNK6-201ENST00000263372 5722 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
USP3Q9Y6I4 PGR-201ENST00000263463 2496 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
USP3Q9Y6I4 PRSS38-201ENST00000366757 1267 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
USP3Q9Y6I4 MCFD2-203ENST00000409147 671 ntTSL 2 BASIC18.62■□□□□ 0.57
USP3Q9Y6I4 TPM4P1-201ENST00000436100 807 ntBASIC18.62■□□□□ 0.57
USP3Q9Y6I4 AC068134.1-202ENST00000439072 356 ntTSL 5 BASIC18.62■□□□□ 0.57
USP3Q9Y6I4 STK32A-AS1-201ENST00000504297 863 ntTSL 3 BASIC18.62■□□□□ 0.57
USP3Q9Y6I4 AL512357.1-201ENST00000557687 518 ntTSL 4 BASIC18.62■□□□□ 0.57
USP3Q9Y6I4 BMF-207ENST00000559701 630 ntTSL 3 BASIC18.62■□□□□ 0.57
USP3Q9Y6I4 ATP6V0C-202ENST00000564973 1081 ntTSL 2 BASIC18.62■□□□□ 0.57
USP3Q9Y6I4 TRAF7-205ENST00000567653 666 ntTSL 2 BASIC18.62■□□□□ 0.57
USP3Q9Y6I4 SNHG15-203ENST00000578968 982 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
USP3Q9Y6I4 AL121894.2-201ENST00000602977 491 ntBASIC18.62■□□□□ 0.57
USP3Q9Y6I4 FAM25C-201ENST00000617224 319 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
USP3Q9Y6I4 C2orf27B-201ENST00000623129 1325 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
USP3Q9Y6I4 HTD2-206ENST00000481972 1378 ntAPPRIS P1 TSL 2 BASIC18.62■□□□□ 0.57
USP3Q9Y6I4 SEPT9-211ENST00000585930 1387 ntTSL 2 BASIC18.62■□□□□ 0.57
USP3Q9Y6I4 CLEC10A-204ENST00000571664 1442 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
USP3Q9Y6I4 AC006116.8-202ENST00000587620 1550 ntBASIC18.62■□□□□ 0.57
USP3Q9Y6I4 ADM-208ENST00000534464 1640 ntTSL 2 BASIC18.62■□□□□ 0.57
USP3Q9Y6I4 RHOBTB3-201ENST00000379982 5537 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
USP3Q9Y6I4 HDAC10-202ENST00000349505 1950 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
USP3Q9Y6I4 ACOXL-205ENST00000439055 2373 ntTSL 2 BASIC18.62■□□□□ 0.57
USP3Q9Y6I4 OLFM1-201ENST00000252854 2591 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
USP3Q9Y6I4 PANX1-201ENST00000227638 2769 ntAPPRIS P2 TSL 1 (best) BASIC18.62■□□□□ 0.57
USP3Q9Y6I4 C16orf45-201ENST00000300006 2404 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
USP3Q9Y6I4 BANP-223ENST00000538234 2372 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
USP3Q9Y6I4 TSKS-201ENST00000246801 1883 ntAPPRIS P2 TSL 1 (best) BASIC18.61■□□□□ 0.57
USP3Q9Y6I4 BPGM-203ENST00000418040 1870 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
USP3Q9Y6I4 MPP2-206ENST00000518766 1896 ntTSL 2 BASIC18.61■□□□□ 0.57
USP3Q9Y6I4 RAB39A-201ENST00000320578 1830 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
USP3Q9Y6I4 RBFOX1-222ENST00000585867 1580 ntTSL 2 BASIC18.61■□□□□ 0.57
USP3Q9Y6I4 AL445238.1-203ENST00000606050 1525 ntTSL 2 BASIC18.61■□□□□ 0.57
USP3Q9Y6I4 VIPR2-202ENST00000377633 1491 ntTSL 2 BASIC18.61■□□□□ 0.57
USP3Q9Y6I4 TNFSF14-202ENST00000599359 1476 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
USP3Q9Y6I4 TMEM25-225ENST00000533102 1410 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
USP3Q9Y6I4 AC005329.3-201ENST00000626781 1366 ntTSL 5 BASIC18.61■□□□□ 0.57
USP3Q9Y6I4 MED16-201ENST00000269814 1199 ntTSL 5 BASIC18.61■□□□□ 0.57
USP3Q9Y6I4 AC004870.1-201ENST00000315132 882 ntBASIC18.61■□□□□ 0.57
USP3Q9Y6I4 TMEM234-202ENST00000344461 721 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
USP3Q9Y6I4 AP2S1-202ENST00000352203 793 ntTSL 2 BASIC18.61■□□□□ 0.57
USP3Q9Y6I4 GNMT-201ENST00000372808 1072 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
USP3Q9Y6I4 PDLIM4-202ENST00000379018 1006 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
USP3Q9Y6I4 FAAHP1-202ENST00000446499 1238 ntBASIC18.61■□□□□ 0.57
USP3Q9Y6I4 TMEM218-203ENST00000526175 972 ntAPPRIS P1 TSL 3 BASIC18.61■□□□□ 0.57
USP3Q9Y6I4 AC020934.1-201ENST00000588469 739 ntTSL 3 BASIC18.61■□□□□ 0.57
USP3Q9Y6I4 AP2S1-204ENST00000597020 707 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
USP3Q9Y6I4 PLAUR-214ENST00000601723 1205 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
USP3Q9Y6I4 MAP2K3-215ENST00000627447 351 ntTSL 5 BASIC18.61■□□□□ 0.57
USP3Q9Y6I4 SH2B3-201ENST00000341259 5406 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
USP3Q9Y6I4 GTPBP2-202ENST00000307126 2933 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
USP3Q9Y6I4 PTP4A3-202ENST00000349124 2710 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
USP3Q9Y6I4 ASB13-201ENST00000357700 2699 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
USP3Q9Y6I4 LRRC32-202ENST00000404995 2656 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
USP3Q9Y6I4 NOV-201ENST00000259526 2522 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
USP3Q9Y6I4 NKIRAS1-207ENST00000437230 1898 ntAPPRIS ALT1 TSL 5 BASIC18.6■□□□□ 0.57
USP3Q9Y6I4 C16orf59-204ENST00000563531 1864 ntAPPRIS ALT2 TSL 5 BASIC18.6■□□□□ 0.57
USP3Q9Y6I4 LTV1-201ENST00000367576 1847 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
USP3Q9Y6I4 CCDC157-201ENST00000338306 3001 ntAPPRIS P3 TSL 5 BASIC18.6■□□□□ 0.57
USP3Q9Y6I4 SRPX-202ENST00000432886 1725 ntTSL 2 BASIC18.6■□□□□ 0.57
USP3Q9Y6I4 ANKRD13B-209ENST00000614878 2670 ntAPPRIS P1 TSL 5 BASIC18.6■□□□□ 0.57
USP3Q9Y6I4 FARP2-202ENST00000373287 2580 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
USP3Q9Y6I4 ARFIP2-201ENST00000254584 2543 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
USP3Q9Y6I4 FHL1-205ENST00000370690 2441 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
USP3Q9Y6I4 PPAN-P2RY11-201ENST00000393796 2385 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
USP3Q9Y6I4 TNFAIP3-207ENST00000614035 1430 ntTSL 5 BASIC18.6■□□□□ 0.57
USP3Q9Y6I4 NXPH2-201ENST00000272641 1052 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
USP3Q9Y6I4 MIR202HG-201ENST00000300167 384 ntTSL 2 BASIC18.6■□□□□ 0.57
USP3Q9Y6I4 KCNAB2-205ENST00000378092 1202 ntAPPRIS ALT1 TSL 5 BASIC18.6■□□□□ 0.57
USP3Q9Y6I4 RBSN-204ENST00000449050 903 ntTSL 2 BASIC18.6■□□□□ 0.57
USP3Q9Y6I4 SAPCD2P3-201ENST00000455031 850 ntBASIC18.6■□□□□ 0.57
USP3Q9Y6I4 AC106795.1-205ENST00000512851 1056 ntBASIC18.6■□□□□ 0.57
USP3Q9Y6I4 NDUFB9-204ENST00000518008 789 ntTSL 2 BASIC18.6■□□□□ 0.57
USP3Q9Y6I4 AF238378.1-201ENST00000526806 358 ntBASIC18.6■□□□□ 0.57
USP3Q9Y6I4 FGF11-204ENST00000575235 928 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
USP3Q9Y6I4 RLN3-202ENST00000585987 541 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
USP3Q9Y6I4 CCDC106-206ENST00000591241 1153 ntTSL 3 BASIC18.6■□□□□ 0.57
USP3Q9Y6I4 RAB17-201ENST00000264601 1966 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
USP3Q9Y6I4 ACYP2-203ENST00000406041 1913 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
USP3Q9Y6I4 HSPA1A-202ENST00000608703 1909 ntTSL 2 BASIC18.6■□□□□ 0.57
USP3Q9Y6I4 RNF32-201ENST00000311822 1842 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
USP3Q9Y6I4 GPANK1-202ENST00000375895 1800 ntAPPRIS P1 TSL 5 BASIC18.6■□□□□ 0.57
USP3Q9Y6I4 SLC12A4-202ENST00000422611 4670 ntTSL 2 BASIC18.6■□□□□ 0.57
USP3Q9Y6I4 ARPP19-201ENST00000249822 5301 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
USP3Q9Y6I4 DDX31-201ENST00000310532 2408 ntTSL 2 BASIC18.6■□□□□ 0.57
USP3Q9Y6I4 MYZAP-201ENST00000267853 2361 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
USP3Q9Y6I4 DIDO1-203ENST00000370366 2383 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
USP3Q9Y6I4 HS3ST2-201ENST00000261374 2314 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
USP3Q9Y6I4 ANKRD6-204ENST00000447838 2968 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
USP3Q9Y6I4 ZNRF2-201ENST00000323037 3460 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
USP3Q9Y6I4 URI1-202ENST00000392271 3444 ntAPPRIS P3 TSL 1 (best) BASIC18.59■□□□□ 0.57
USP3Q9Y6I4 PAQR4-202ENST00000318782 2793 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
USP3Q9Y6I4 BPGM-202ENST00000393132 2051 ntAPPRIS P1 TSL 5 BASIC18.59■□□□□ 0.57
USP3Q9Y6I4 CD151-203ENST00000397421 1486 ntAPPRIS P2 TSL 1 (best) BASIC18.59■□□□□ 0.57
USP3Q9Y6I4 HIPK1-207ENST00000369561 3777 ntTSL 5 BASIC18.59■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 57.4 ms