Protein–RNA interactions for Protein: Q9NPC8

SIX2, Homeobox protein SIX2, humanhuman

Predictions only

Length 291 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX2Q9NPC8 LYRM9-203ENST00000460380 2196 ntTSL 2 BASIC19.12■□□□□ 0.65
SIX2Q9NPC8 NKX2-2-201ENST00000377142 2092 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
SIX2Q9NPC8 NOL4L-205ENST00000375678 2042 ntAPPRIS ALT2 TSL 2 BASIC19.12■□□□□ 0.65
SIX2Q9NPC8 LPAR3-201ENST00000370611 1720 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
SIX2Q9NPC8 TMCO1-207ENST00000580248 1735 ntTSL 2 BASIC19.12■□□□□ 0.65
SIX2Q9NPC8 SLC35G6-201ENST00000412468 1697 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
SIX2Q9NPC8 OPRK1-202ENST00000520287 1602 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
SIX2Q9NPC8 P2RY6-209ENST00000540342 1611 ntAPPRIS P1 TSL 2 BASIC19.12■□□□□ 0.65
SIX2Q9NPC8 AC010460.3-201ENST00000511359 1579 ntBASIC19.12■□□□□ 0.65
SIX2Q9NPC8 TCEAL4-201ENST00000372629 1511 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
SIX2Q9NPC8 BX276092.7-203ENST00000637198 1536 ntBASIC19.12■□□□□ 0.65
SIX2Q9NPC8 LRRC29-201ENST00000393992 1468 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
SIX2Q9NPC8 IDS-202ENST00000370441 1399 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
SIX2Q9NPC8 AC004540.1-203ENST00000421862 907 ntTSL 5 BASIC19.12■□□□□ 0.65
SIX2Q9NPC8 DMKN-215ENST00000451297 1111 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
SIX2Q9NPC8 PRKCB-209ENST00000498058 480 ntTSL 3 BASIC19.12■□□□□ 0.65
SIX2Q9NPC8 TFF3-204ENST00000518498 1109 ntAPPRIS P2 TSL 1 (best) BASIC19.12■□□□□ 0.65
SIX2Q9NPC8 IFI27L1-206ENST00000554562 571 ntTSL 3 BASIC19.12■□□□□ 0.65
SIX2Q9NPC8 EIF2AK4-209ENST00000560648 687 ntTSL 3 BASIC19.12■□□□□ 0.65
SIX2Q9NPC8 AC126696.3-202ENST00000570159 553 ntTSL 5 BASIC19.12■□□□□ 0.65
SIX2Q9NPC8 MAP3K14-AS1-202ENST00000585351 893 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
SIX2Q9NPC8 NDUFV2-AS1-203ENST00000608008 779 ntBASIC19.12■□□□□ 0.65
SIX2Q9NPC8 KDM1A-201ENST00000356634 3033 ntAPPRIS P3 TSL 1 (best) BASIC19.12■□□□□ 0.65
SIX2Q9NPC8 GGNBP2-212ENST00000613102 2847 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
SIX2Q9NPC8 TSNARE1-204ENST00000519651 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
SIX2Q9NPC8 ABHD14B-206ENST00000483233 2056 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
SIX2Q9NPC8 PABPC1L-201ENST00000217073 1851 ntAPPRIS P1 TSL 5 BASIC19.11■□□□□ 0.65
SIX2Q9NPC8 PTGER3-208ENST00000370932 1841 ntAPPRIS ALT2 TSL 5 BASIC19.11■□□□□ 0.65
SIX2Q9NPC8 NFKBID-210ENST00000606253 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
SIX2Q9NPC8 SLC22A18AS-203ENST00000625099 1659 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
SIX2Q9NPC8 EIF3J-201ENST00000261868 2569 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
SIX2Q9NPC8 KCNJ2-AS1-201ENST00000590966 2442 ntBASIC19.11■□□□□ 0.65
SIX2Q9NPC8 ZSWIM4-201ENST00000254323 4339 ntAPPRIS P1 TSL 2 BASIC19.11■□□□□ 0.65
SIX2Q9NPC8 OSGIN1-202ENST00000361711 2230 ntAPPRIS P1 TSL 2 BASIC19.11■□□□□ 0.65
SIX2Q9NPC8 HAAO-201ENST00000294973 1265 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
SIX2Q9NPC8 C20orf196-201ENST00000303142 1154 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
SIX2Q9NPC8 ZNF575-201ENST00000314228 1298 ntAPPRIS P1 TSL 2 BASIC19.11■□□□□ 0.65
SIX2Q9NPC8 LCE1D-201ENST00000326233 430 ntAPPRIS P1 TSL 5 BASIC19.11■□□□□ 0.65
SIX2Q9NPC8 PODXL-202ENST00000378555 2105 ntAPPRIS P3 TSL 1 (best) BASIC19.11■□□□□ 0.65
SIX2Q9NPC8 ISG15-201ENST00000379389 711 ntAPPRIS P2 TSL 1 (best) BASIC19.11■□□□□ 0.65
SIX2Q9NPC8 PDCD6-207ENST00000509581 1156 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
SIX2Q9NPC8 SPAG7-207ENST00000575142 1094 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
SIX2Q9NPC8 AC011511.2-201ENST00000592893 918 ntTSL 3 BASIC19.11■□□□□ 0.65
SIX2Q9NPC8 MSC-201ENST00000325509 2023 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
SIX2Q9NPC8 GABBR1-204ENST00000377016 4299 ntTSL 5 BASIC19.11■□□□□ 0.65
SIX2Q9NPC8 RWDD4-202ENST00000327570 2590 ntAPPRIS ALT1 TSL 3 BASIC19.11■□□□□ 0.65
SIX2Q9NPC8 GRK6-202ENST00000355958 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC19.11■□□□□ 0.65
SIX2Q9NPC8 SRPX-202ENST00000432886 1725 ntTSL 2 BASIC19.11■□□□□ 0.65
SIX2Q9NPC8 TOM1L2-207ENST00000535933 1748 ntTSL 2 BASIC19.11■□□□□ 0.65
SIX2Q9NPC8 PTGES2-201ENST00000277462 1614 ntTSL 2 BASIC19.11■□□□□ 0.65
SIX2Q9NPC8 DIABLO-206ENST00000443649 2250 ntAPPRIS P1 TSL 2 BASIC19.11■□□□□ 0.65
SIX2Q9NPC8 AC007192.1-201ENST00000593731 5142 ntAPPRIS P1 TSL 2 BASIC19.1■□□□□ 0.65
SIX2Q9NPC8 DTX3-204ENST00000548804 2067 ntAPPRIS P3 TSL 5 BASIC19.1■□□□□ 0.65
SIX2Q9NPC8 IFNLR1-205ENST00000374421 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC19.1■□□□□ 0.65
SIX2Q9NPC8 MARK1-205ENST00000611084 5321 ntAPPRIS ALT1 TSL 1 (best) BASIC19.1■□□□□ 0.65
SIX2Q9NPC8 STXBP3-201ENST00000370008 2478 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
SIX2Q9NPC8 TLE2-219ENST00000591529 2483 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
SIX2Q9NPC8 HNRNPM-217ENST00000620401 2458 ntAPPRIS ALT2 TSL 1 (best) BASIC19.1■□□□□ 0.65
SIX2Q9NPC8 RBL2-201ENST00000262133 4906 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
SIX2Q9NPC8 STX2-201ENST00000261653 3331 ntAPPRIS ALT1 TSL 1 (best) BASIC19.1■□□□□ 0.65
SIX2Q9NPC8 DDRGK1-202ENST00000380201 1128 ntTSL 2 BASIC19.1■□□□□ 0.65
SIX2Q9NPC8 AL031133.1-201ENST00000406807 723 ntBASIC19.1■□□□□ 0.65
SIX2Q9NPC8 CNP-204ENST00000472031 1019 ntTSL 2 BASIC19.1■□□□□ 0.65
SIX2Q9NPC8 KRT18P21-201ENST00000515767 1272 ntBASIC19.1■□□□□ 0.65
SIX2Q9NPC8 COX6C-204ENST00000520271 571 ntAPPRIS P1 TSL 2 BASIC19.1■□□□□ 0.65
SIX2Q9NPC8 AL136038.3-201ENST00000561909 1096 ntBASIC19.1■□□□□ 0.65
SIX2Q9NPC8 LINC00092-202ENST00000580908 580 ntTSL 2 BASIC19.1■□□□□ 0.65
SIX2Q9NPC8 AL353801.3-201ENST00000609898 542 ntBASIC19.1■□□□□ 0.65
SIX2Q9NPC8 C10orf142-202ENST00000623589 1010 ntAPPRIS ALT2 TSL 5 BASIC19.1■□□□□ 0.65
SIX2Q9NPC8 RBM26-207ENST00000622611 5230 ntTSL 2 BASIC19.1■□□□□ 0.65
SIX2Q9NPC8 HAS3-205ENST00000569188 2170 ntAPPRIS P1 TSL 2 BASIC19.1■□□□□ 0.65
SIX2Q9NPC8 WDR13-201ENST00000218056 2124 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
SIX2Q9NPC8 ADM-208ENST00000534464 1640 ntTSL 2 BASIC19.1■□□□□ 0.65
SIX2Q9NPC8 ZNF264-202ENST00000536056 2078 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
SIX2Q9NPC8 ITGB5-201ENST00000296181 4372 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
SIX2Q9NPC8 THNSL2-203ENST00000377254 1560 ntTSL 2 BASIC19.1■□□□□ 0.65
SIX2Q9NPC8 OSBP2-202ENST00000401475 2468 ntTSL 2 BASIC19.1■□□□□ 0.65
SIX2Q9NPC8 EPB41L5-203ENST00000443124 2872 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
SIX2Q9NPC8 NPTN-202ENST00000351217 2817 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
SIX2Q9NPC8 SLC39A1-211ENST00000621013 2322 ntAPPRIS P1 TSL 2 BASIC19.09■□□□□ 0.65
SIX2Q9NPC8 VSIG10L2-202ENST00000638636 2304 ntAPPRIS P1 TSL 5 BASIC19.09■□□□□ 0.65
SIX2Q9NPC8 SLC9A6-201ENST00000370695 4725 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
SIX2Q9NPC8 SEPT2-245ENST00000616972 3446 ntTSL 2 BASIC19.09■□□□□ 0.65
SIX2Q9NPC8 FBXO7-201ENST00000266087 2195 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
SIX2Q9NPC8 AP001094.4-201ENST00000579008 2176 ntBASIC19.09■□□□□ 0.65
SIX2Q9NPC8 CDH24-201ENST00000267383 2873 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
SIX2Q9NPC8 PDLIM7-202ENST00000355841 1689 ntAPPRIS P4 TSL 1 (best) BASIC19.09■□□□□ 0.65
SIX2Q9NPC8 TRMT44-205ENST00000513449 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.65
SIX2Q9NPC8 SLC1A5-205ENST00000594991 2031 ntTSL 2 BASIC19.09■□□□□ 0.65
SIX2Q9NPC8 CYP2W1-202ENST00000340150 2361 ntTSL 2 BASIC19.09■□□□□ 0.65
SIX2Q9NPC8 CD1E-210ENST00000368165 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.65
SIX2Q9NPC8 UFSP1-201ENST00000388761 996 ntAPPRIS P1 BASIC19.09■□□□□ 0.65
SIX2Q9NPC8 TNFRSF10C-202ENST00000397703 1242 ntTSL 2 BASIC19.09■□□□□ 0.65
SIX2Q9NPC8 TSPY22P-201ENST00000427496 604 ntBASIC19.09■□□□□ 0.65
SIX2Q9NPC8 CD1E-214ENST00000452291 745 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
SIX2Q9NPC8 ZNF655-218ENST00000454654 571 ntTSL 4 BASIC19.09■□□□□ 0.65
SIX2Q9NPC8 AC009084.1-201ENST00000566869 317 ntTSL 5 BASIC19.09■□□□□ 0.65
SIX2Q9NPC8 AC012313.1-201ENST00000593393 3059 ntBASIC19.09■□□□□ 0.65
SIX2Q9NPC8 KCNQ5-201ENST00000342056 6688 ntAPPRIS ALT1 TSL 5 BASIC19.09■□□□□ 0.65
SIX2Q9NPC8 SYNE3-202ENST00000553340 2615 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 45.6 ms