Protein–RNA interactions for Protein: Q9BRZ2

TRIM56, E3 ubiquitin-protein ligase TRIM56, humanhuman

Known RBP Predictions only

Length 755 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM56Q9BRZ2 AL355312.1-201ENST00000407115 2176 ntBASIC18.23■□□□□ 0.51
TRIM56Q9BRZ2 LINC01554-202ENST00000436592 2052 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
TRIM56Q9BRZ2 ZIC3-202ENST00000370606 1968 ntTSL 5 BASIC18.23■□□□□ 0.51
TRIM56Q9BRZ2 ZIC4-212ENST00000484399 1774 ntAPPRIS P1 TSL 2 BASIC18.23■□□□□ 0.51
TRIM56Q9BRZ2 MAP3K6-202ENST00000374040 4309 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
TRIM56Q9BRZ2 UBE2E1-202ENST00000346855 1398 ntTSL 3 BASIC18.23■□□□□ 0.51
TRIM56Q9BRZ2 SLX1A-201ENST00000251303 1091 ntAPPRIS P4 TSL 1 (best) BASIC18.23■□□□□ 0.51
TRIM56Q9BRZ2 BUD23-201ENST00000265758 1230 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
TRIM56Q9BRZ2 SLX1B-201ENST00000330181 1165 ntAPPRIS P4 TSL 1 (best) BASIC18.23■□□□□ 0.51
TRIM56Q9BRZ2 CD70-202ENST00000423145 881 ntTSL 2 BASIC18.23■□□□□ 0.51
TRIM56Q9BRZ2 AC037459.1-202ENST00000430850 531 ntAPPRIS P1 TSL 4 BASIC18.23■□□□□ 0.51
TRIM56Q9BRZ2 MEAF6-205ENST00000448519 666 ntAPPRIS ALT1 TSL 1 (best) BASIC18.23■□□□□ 0.51
TRIM56Q9BRZ2 LINC01184-202ENST00000501173 949 ntTSL 5 BASIC18.23■□□□□ 0.51
TRIM56Q9BRZ2 AC006942.1-201ENST00000600669 520 ntTSL 2 BASIC18.23■□□□□ 0.51
TRIM56Q9BRZ2 FLYWCH1-203ENST00000416288 4963 ntAPPRIS P3 TSL 1 (best) BASIC18.23■□□□□ 0.51
TRIM56Q9BRZ2 GLIS1-202ENST00000628545 2807 ntAPPRIS ALT2 TSL 5 BASIC18.23■□□□□ 0.51
TRIM56Q9BRZ2 MAP7-209ENST00000618822 4497 ntAPPRIS ALT2 TSL 5 BASIC18.23■□□□□ 0.51
TRIM56Q9BRZ2 MUM1-216ENST00000627377 2235 ntAPPRIS ALT2 TSL 5 BASIC18.23■□□□□ 0.51
TRIM56Q9BRZ2 MAGED2-213ENST00000627068 1811 ntAPPRIS ALT2 TSL 5 BASIC18.23■□□□□ 0.51
TRIM56Q9BRZ2 FBXL20-205ENST00000583610 1739 ntAPPRIS P1 TSL 2 BASIC18.23■□□□□ 0.51
TRIM56Q9BRZ2 CHUK-201ENST00000370397 3625 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
TRIM56Q9BRZ2 LINC00167-201ENST00000530583 1419 ntBASIC18.23■□□□□ 0.51
TRIM56Q9BRZ2 MAP4K2-202ENST00000377350 2931 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
TRIM56Q9BRZ2 ATXN7-210ENST00000487717 3683 ntAPPRIS P3 TSL 5 BASIC18.22■□□□□ 0.51
TRIM56Q9BRZ2 PLCD3-212ENST00000619929 6107 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
TRIM56Q9BRZ2 OLA1-201ENST00000284719 4417 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
TRIM56Q9BRZ2 FAM110A-202ENST00000304189 1856 ntAPPRIS P1 TSL 2 BASIC18.22■□□□□ 0.51
TRIM56Q9BRZ2 FAM72C-201ENST00000369175 1658 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
TRIM56Q9BRZ2 FAM72B-207ENST00000619376 1659 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
TRIM56Q9BRZ2 AVPR1B-201ENST00000367126 2237 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
TRIM56Q9BRZ2 PRDX3-201ENST00000298510 1591 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
TRIM56Q9BRZ2 PDIA2-202ENST00000404312 1575 ntAPPRIS ALT2 TSL 5 BASIC18.22■□□□□ 0.51
TRIM56Q9BRZ2 PBK-203ENST00000522944 1499 ntTSL 2 BASIC18.22■□□□□ 0.51
TRIM56Q9BRZ2 GABRB3-202ENST00000311550 5781 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
TRIM56Q9BRZ2 FAM50A-202ENST00000393600 1352 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
TRIM56Q9BRZ2 MAP3K7CL-206ENST00000399928 1904 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
TRIM56Q9BRZ2 PNOC-201ENST00000301908 1200 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
TRIM56Q9BRZ2 COMMD1-201ENST00000311832 911 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
TRIM56Q9BRZ2 IFI6-201ENST00000339145 822 ntAPPRIS P4 TSL 2 BASIC18.22■□□□□ 0.51
TRIM56Q9BRZ2 INSIG1-202ENST00000342407 1127 ntTSL 2 BASIC18.22■□□□□ 0.51
TRIM56Q9BRZ2 C20orf166-AS1-202ENST00000436101 761 ntTSL 5 BASIC18.22■□□□□ 0.51
TRIM56Q9BRZ2 LINC01024-205ENST00000521563 939 ntTSL 3 BASIC18.22■□□□□ 0.51
TRIM56Q9BRZ2 DUT-205ENST00000558813 769 ntTSL 2 BASIC18.22■□□□□ 0.51
TRIM56Q9BRZ2 NUDT16L1-203ENST00000586252 922 ntTSL 3 BASIC18.22■□□□□ 0.51
TRIM56Q9BRZ2 CLDND2-203ENST00000601435 575 ntAPPRIS P1 TSL 3 BASIC18.22■□□□□ 0.51
TRIM56Q9BRZ2 AC009477.2-201ENST00000635976 171 ntAPPRIS P1 BASIC18.22■□□□□ 0.51
TRIM56Q9BRZ2 USH1C-205ENST00000527020 2159 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
TRIM56Q9BRZ2 FMR1-205ENST00000370475 4308 ntAPPRIS P3 TSL 1 (best) BASIC18.22■□□□□ 0.51
TRIM56Q9BRZ2 STARD10-218ENST00000543304 1513 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
TRIM56Q9BRZ2 LRCH2-201ENST00000317135 4929 ntAPPRIS P3 TSL 1 (best) BASIC18.22■□□□□ 0.51
TRIM56Q9BRZ2 CD99P1-204ENST00000435581 2788 ntTSL 2 BASIC18.22■□□□□ 0.51
TRIM56Q9BRZ2 RECK-201ENST00000377966 4888 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
TRIM56Q9BRZ2 ZFP91-201ENST00000316059 5220 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
TRIM56Q9BRZ2 STAC3-201ENST00000332782 1656 ntAPPRIS P1 TSL 2 BASIC18.22■□□□□ 0.51
TRIM56Q9BRZ2 AC055811.2-201ENST00000427497 1693 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
TRIM56Q9BRZ2 CTSB-204ENST00000453527 2011 ntAPPRIS P1 TSL 2 BASIC18.22■□□□□ 0.51
TRIM56Q9BRZ2 SMARCA4-203ENST00000429416 5691 ntTSL 2 BASIC18.21■□□□□ 0.51
TRIM56Q9BRZ2 EPHA10-201ENST00000319637 2050 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
TRIM56Q9BRZ2 HOXA-AS3-205ENST00000524304 2063 ntTSL 2 BASIC18.21■□□□□ 0.51
TRIM56Q9BRZ2 MTCL1-205ENST00000517570 6009 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
TRIM56Q9BRZ2 AMMECR1-201ENST00000262844 5504 ntAPPRIS P3 TSL 1 (best) BASIC18.21■□□□□ 0.51
TRIM56Q9BRZ2 ZNF584-202ENST00000322834 1042 ntTSL 2 BASIC18.21■□□□□ 0.51
TRIM56Q9BRZ2 SPNS1-202ENST00000323081 2102 ntTSL 2 BASIC18.21■□□□□ 0.51
TRIM56Q9BRZ2 SDCBP2-203ENST00000381808 1261 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
TRIM56Q9BRZ2 ZNF534-203ENST00000432303 956 ntTSL 2 BASIC18.21■□□□□ 0.51
TRIM56Q9BRZ2 DCTN3-209ENST00000477738 713 ntTSL 3 BASIC18.21■□□□□ 0.51
TRIM56Q9BRZ2 ERI1-203ENST00000519292 2107 ntAPPRIS P1 TSL 2 BASIC18.21■□□□□ 0.51
TRIM56Q9BRZ2 GCSHP2-201ENST00000560971 527 ntBASIC18.21■□□□□ 0.51
TRIM56Q9BRZ2 AC009065.1-201ENST00000564055 1225 ntBASIC18.21■□□□□ 0.51
TRIM56Q9BRZ2 AC002094.1-201ENST00000591482 1050 ntTSL 2 BASIC18.21■□□□□ 0.51
TRIM56Q9BRZ2 AC034238.1-212ENST00000596137 723 ntTSL 5 BASIC18.21■□□□□ 0.51
TRIM56Q9BRZ2 AC010331.1-201ENST00000611423 582 ntBASIC18.21■□□□□ 0.51
TRIM56Q9BRZ2 AL023973.1-201ENST00000624619 620 ntBASIC18.21■□□□□ 0.51
TRIM56Q9BRZ2 AL590627.2-201ENST00000637510 144 ntTSL 5 BASIC18.21■□□□□ 0.51
TRIM56Q9BRZ2 NFS1-202ENST00000374085 2645 ntTSL 2 BASIC18.21■□□□□ 0.51
TRIM56Q9BRZ2 CCT7-215ENST00000539919 2031 ntTSL 2 BASIC18.21■□□□□ 0.51
TRIM56Q9BRZ2 TRAM1-201ENST00000262213 2785 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
TRIM56Q9BRZ2 MIB2-201ENST00000355826 3290 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
TRIM56Q9BRZ2 LAMC1-201ENST00000258341 7889 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
TRIM56Q9BRZ2 MYO1B-202ENST00000339514 5026 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
TRIM56Q9BRZ2 ARSA-204ENST00000395621 1918 ntAPPRIS P1 TSL 2 BASIC18.21■□□□□ 0.51
TRIM56Q9BRZ2 CDH24-204ENST00000487137 3438 ntAPPRIS P1 TSL 5 BASIC18.21■□□□□ 0.51
TRIM56Q9BRZ2 RABL6-203ENST00000371663 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
TRIM56Q9BRZ2 SLC22A7-201ENST00000372574 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
TRIM56Q9BRZ2 WDSUB1-203ENST00000392796 1812 ntAPPRIS P1 TSL 2 BASIC18.21■□□□□ 0.51
TRIM56Q9BRZ2 FDXR-205ENST00000544854 1827 ntTSL 2 BASIC18.21■□□□□ 0.51
TRIM56Q9BRZ2 CUTC-202ENST00000370476 1346 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
TRIM56Q9BRZ2 ZBTB44-201ENST00000357899 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
TRIM56Q9BRZ2 AC008969.1-203ENST00000313957 1897 ntTSL 2 BASIC18.2■□□□□ 0.5
TRIM56Q9BRZ2 ARSE-201ENST00000381134 1853 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
TRIM56Q9BRZ2 AL079301.1-201ENST00000424580 1633 ntTSL 2 BASIC18.2■□□□□ 0.5
TRIM56Q9BRZ2 PML-220ENST00000569477 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
TRIM56Q9BRZ2 METTL21A-208ENST00000448007 1770 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
TRIM56Q9BRZ2 SQSTM1-202ENST00000389805 2986 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
TRIM56Q9BRZ2 ARNTL-205ENST00000403510 2745 ntTSL 2 BASIC18.2■□□□□ 0.5
TRIM56Q9BRZ2 IL12RB2-202ENST00000371000 2454 ntTSL 2 BASIC18.2■□□□□ 0.5
TRIM56Q9BRZ2 LINC00602-201ENST00000629776 2065 ntBASIC18.2■□□□□ 0.5
TRIM56Q9BRZ2 NDUFAF2-201ENST00000296597 719 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
TRIM56Q9BRZ2 KIRREL3-AS3-201ENST00000404882 831 ntBASIC18.2■□□□□ 0.5
TRIM56Q9BRZ2 AC008105.2-201ENST00000420431 579 ntTSL 4 BASIC18.2■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 55.9 ms