Protein–RNA interactions for Protein: Q4VC31

CCDC58, Coiled-coil domain-containing protein 58, humanhuman

Predictions only

Length 144 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC58Q4VC31 IMPA1-201ENST00000256108 2690 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
CCDC58Q4VC31 NPL-204ENST00000367554 3027 ntTSL 1 (best) BASIC16■□□□□ 0.15
CCDC58Q4VC31 SARAF-214ENST00000545648 1976 ntTSL 1 (best) BASIC16■□□□□ 0.15
CCDC58Q4VC31 CCDC120-206ENST00000603986 2379 ntAPPRIS ALT2 TSL 2 BASIC16■□□□□ 0.15
CCDC58Q4VC31 ACHE-202ENST00000302913 2956 ntTSL 1 (best) BASIC16■□□□□ 0.15
CCDC58Q4VC31 AK4-208ENST00000546702 1335 ntTSL 1 (best) BASIC16■□□□□ 0.15
CCDC58Q4VC31 C12orf42-205ENST00000548048 1532 ntAPPRIS ALT2 TSL 5 BASIC16■□□□□ 0.15
CCDC58Q4VC31 MFSD2A-203ENST00000420632 1914 ntTSL 2 BASIC16■□□□□ 0.15
CCDC58Q4VC31 USP2-202ENST00000455332 2903 ntTSL 1 (best) BASIC16■□□□□ 0.15
CCDC58Q4VC31 PHF20L1-201ENST00000220847 3297 ntTSL 5 BASIC16■□□□□ 0.15
CCDC58Q4VC31 CERCAM-201ENST00000372838 2685 ntAPPRIS P3 TSL 1 (best) BASIC16■□□□□ 0.15
CCDC58Q4VC31 FLYWCH2-202ENST00000396958 1036 ntAPPRIS P2 TSL 1 (best) BASIC16■□□□□ 0.15
CCDC58Q4VC31 ESRRAP1-201ENST00000400596 1257 ntBASIC16■□□□□ 0.15
CCDC58Q4VC31 STK24-AS1-201ENST00000434547 1278 ntTSL 1 (best) BASIC16■□□□□ 0.15
CCDC58Q4VC31 FADS3-204ENST00000525588 1254 ntTSL 5 BASIC16■□□□□ 0.15
CCDC58Q4VC31 RNF121-214ENST00000533380 870 ntTSL 3 BASIC16■□□□□ 0.15
CCDC58Q4VC31 TARBP2-220ENST00000552857 916 ntTSL 5 BASIC16■□□□□ 0.15
CCDC58Q4VC31 DGCR10-201ENST00000609839 495 ntBASIC16■□□□□ 0.15
CCDC58Q4VC31 BMI1-201ENST00000376663 3428 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
CCDC58Q4VC31 C5orf30-201ENST00000319933 3049 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
CCDC58Q4VC31 TRAPPC11-201ENST00000334690 4552 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
CCDC58Q4VC31 EXOC5-201ENST00000340918 2632 ntTSL 2 BASIC16■□□□□ 0.15
CCDC58Q4VC31 PCGF6-202ENST00000369847 2230 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
CCDC58Q4VC31 SAYSD1-201ENST00000229903 2020 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
CCDC58Q4VC31 NDRG2-208ENST00000397851 2022 ntAPPRIS P4 TSL 2 BASIC16■□□□□ 0.15
CCDC58Q4VC31 JMJD6-202ENST00000397625 1603 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
CCDC58Q4VC31 AC007743.1-203ENST00000447423 1623 ntTSL 2 BASIC16■□□□□ 0.15
CCDC58Q4VC31 ZNF804A-201ENST00000302277 4690 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
CCDC58Q4VC31 FAM99A-201ENST00000382167 1432 ntTSL 1 (best) BASIC16■□□□□ 0.15
CCDC58Q4VC31 CBARP-204ENST00000590083 4261 ntAPPRIS P2 TSL 1 (best) BASIC16■□□□□ 0.15
CCDC58Q4VC31 GCDH-201ENST00000222214 1956 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
CCDC58Q4VC31 PDIA2-202ENST00000404312 1575 ntAPPRIS ALT2 TSL 5 BASIC16■□□□□ 0.15
CCDC58Q4VC31 LINC00336-201ENST00000477984 2107 ntTSL 2 BASIC16■□□□□ 0.15
CCDC58Q4VC31 MTDH-201ENST00000336273 6177 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
CCDC58Q4VC31 TRIM74-201ENST00000285805 1350 ntAPPRIS P2 TSL 1 (best) BASIC16■□□□□ 0.15
CCDC58Q4VC31 TRIM73-201ENST00000323819 1358 ntAPPRIS P2 TSL 1 (best) BASIC16■□□□□ 0.15
CCDC58Q4VC31 LRRC23-207ENST00000433346 1387 ntTSL 5 BASIC16■□□□□ 0.15
CCDC58Q4VC31 ANKRD24-202ENST00000318934 3906 ntAPPRIS P2 TSL 5 BASIC16■□□□□ 0.15
CCDC58Q4VC31 ALDH16A1-201ENST00000293350 3153 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
CCDC58Q4VC31 ZNF628-201ENST00000391718 3177 ntAPPRIS ALT2 BASIC15.99■□□□□ 0.15
CCDC58Q4VC31 AC004951.4-201ENST00000454572 2076 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
CCDC58Q4VC31 ALDH3B1-208ENST00000617288 2078 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
CCDC58Q4VC31 TRIM39-201ENST00000376656 3338 ntAPPRIS P4 TSL 2 BASIC15.99■□□□□ 0.15
CCDC58Q4VC31 IMMP2L-202ENST00000405709 1522 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
CCDC58Q4VC31 HAUS8-202ENST00000448593 1545 ntAPPRIS ALT2 TSL 5 BASIC15.99■□□□□ 0.15
CCDC58Q4VC31 AC008741.2-201ENST00000612792 3115 ntBASIC15.99■□□□□ 0.15
CCDC58Q4VC31 SLC47A1-209ENST00000575023 2224 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
CCDC58Q4VC31 CNP-201ENST00000393888 2583 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
CCDC58Q4VC31 FUK-207ENST00000571514 3054 ntTSL 2 BASIC15.99■□□□□ 0.15
CCDC58Q4VC31 C2CD4A-201ENST00000355522 3445 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
CCDC58Q4VC31 NAA60-201ENST00000360862 2522 ntTSL 2 BASIC15.99■□□□□ 0.15
CCDC58Q4VC31 SLC29A2-206ENST00000546034 2509 ntAPPRIS P1 TSL 5 BASIC15.99■□□□□ 0.15
CCDC58Q4VC31 RNF217-211ENST00000560949 5145 ntAPPRIS ALT2 TSL 5 BASIC15.99■□□□□ 0.15
CCDC58Q4VC31 CD164L2-202ENST00000374027 1457 ntAPPRIS P3 TSL 1 (best) BASIC15.99■□□□□ 0.15
CCDC58Q4VC31 VIPR1-217ENST00000543411 2681 ntTSL 2 BASIC15.99■□□□□ 0.15
CCDC58Q4VC31 PIAS4-201ENST00000262971 3159 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
CCDC58Q4VC31 AL662844.4-201ENST00000606367 2838 ntBASIC15.99■□□□□ 0.15
CCDC58Q4VC31 DCAF8-218ENST00000610139 1607 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
CCDC58Q4VC31 CTAG2-201ENST00000247306 993 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
CCDC58Q4VC31 WNT1-201ENST00000293549 1185 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
CCDC58Q4VC31 MTFP1-202ENST00000355143 891 ntTSL 2 BASIC15.99■□□□□ 0.15
CCDC58Q4VC31 PDCD2-202ENST00000392090 936 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
CCDC58Q4VC31 MESTP1-201ENST00000404287 994 ntBASIC15.99■□□□□ 0.15
CCDC58Q4VC31 RAMP1-204ENST00000409726 734 ntTSL 3 BASIC15.99■□□□□ 0.15
CCDC58Q4VC31 CCK-203ENST00000434608 747 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
CCDC58Q4VC31 MAGI2-AS3-209ENST00000448195 774 ntTSL 3 BASIC15.99■□□□□ 0.15
CCDC58Q4VC31 AC091153.3-201ENST00000497885 472 ntTSL 2 BASIC15.99■□□□□ 0.15
CCDC58Q4VC31 CYP2D6-201ENST00000359033 1433 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
CCDC58Q4VC31 TMEM234-203ENST00000373593 1411 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
CCDC58Q4VC31 ARHGEF28-211ENST00000512883 2936 ntTSL 2 BASIC15.99■□□□□ 0.15
CCDC58Q4VC31 SPRYD7-202ENST00000378195 3086 ntTSL 2 BASIC15.99■□□□□ 0.15
CCDC58Q4VC31 AC010198.1-201ENST00000500076 1552 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
CCDC58Q4VC31 AL138688.1-201ENST00000624851 1594 ntBASIC15.99■□□□□ 0.15
CCDC58Q4VC31 AC005833.1-201ENST00000280684 4237 ntAPPRIS P1 BASIC15.99■□□□□ 0.15
CCDC58Q4VC31 JMY-201ENST00000396137 9042 ntAPPRIS P1 TSL 5 BASIC15.99■□□□□ 0.15
CCDC58Q4VC31 DLC1-203ENST00000358919 4392 ntAPPRIS ALT2 TSL 1 (best) BASIC15.99■□□□□ 0.15
CCDC58Q4VC31 HNRNPUL2-BSCL2-201ENST00000403734 4001 ntAPPRIS P1 TSL 2 BASIC15.99■□□□□ 0.15
CCDC58Q4VC31 KRT8-201ENST00000293308 1882 ntAPPRIS P1 TSL 5 BASIC15.99■□□□□ 0.15
CCDC58Q4VC31 CNTNAP3-201ENST00000297668 5064 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
CCDC58Q4VC31 ASL-204ENST00000395331 1538 ntTSL 5 BASIC15.99■□□□□ 0.15
CCDC58Q4VC31 ZNF18-204ENST00000580306 2330 ntAPPRIS P3 TSL 2 BASIC15.99■□□□□ 0.15
CCDC58Q4VC31 GRB7-202ENST00000394204 1667 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
CCDC58Q4VC31 RBPMS-204ENST00000397323 2941 ntAPPRIS P3 TSL 1 (best) BASIC15.98■□□□□ 0.15
CCDC58Q4VC31 NCCRP1-201ENST00000339852 1978 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
CCDC58Q4VC31 SURF4-209ENST00000618229 3200 ntTSL 2 BASIC15.98■□□□□ 0.15
CCDC58Q4VC31 RTN4-207ENST00000402434 1456 ntTSL 5 BASIC15.98■□□□□ 0.15
CCDC58Q4VC31 CAPN15-201ENST00000219611 4744 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
CCDC58Q4VC31 EPN2-203ENST00000395618 2216 ntTSL 2 BASIC15.98■□□□□ 0.15
CCDC58Q4VC31 LINC02551-202ENST00000533812 2203 ntTSL 5 BASIC15.98■□□□□ 0.15
CCDC58Q4VC31 ZBTB17-216ENST00000537142 2511 ntTSL 2 BASIC15.98■□□□□ 0.15
CCDC58Q4VC31 GPR176-205ENST00000561100 2816 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
CCDC58Q4VC31 PLA2G12A-201ENST00000243501 5226 ntAPPRIS P2 TSL 1 (best) BASIC15.98■□□□□ 0.15
CCDC58Q4VC31 PHYKPL-201ENST00000308158 2038 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
CCDC58Q4VC31 SYNE4-202ENST00000340477 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC15.98■□□□□ 0.15
CCDC58Q4VC31 FIBCD1-201ENST00000372337 1868 ntTSL 5 BASIC15.98■□□□□ 0.15
CCDC58Q4VC31 VSIG2-202ENST00000403470 1191 ntTSL 2 BASIC15.98■□□□□ 0.15
CCDC58Q4VC31 APTR-205ENST00000447009 902 ntTSL 2 BASIC15.98■□□□□ 0.15
CCDC58Q4VC31 NDUFAF3-204ENST00000451378 774 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
CCDC58Q4VC31 HGNC:18790-208ENST00000506380 798 ntAPPRIS P1 TSL 3 BASIC15.98■□□□□ 0.15
CCDC58Q4VC31 DUTP2-201ENST00000519164 463 ntBASIC15.98■□□□□ 0.15
Retrieved 100 of 98,524 protein–RNA pairs in 65.3 ms