Protein–RNA interactions for Protein: P61011

SRP54, Signal recognition particle 54 kDa protein, humanhuman

Known RBP Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54P61011 TBC1D3P5-201ENST00000579401 1545 ntBASIC17.59■□□□□ 0.41
SRP54P61011 CXorf40B-205ENST00000462691 1440 ntAPPRIS ALT1 TSL 3 BASIC17.59■□□□□ 0.41
SRP54P61011 PORCN-205ENST00000367574 1368 ntAPPRIS ALT1 TSL 1 (best) BASIC17.59■□□□□ 0.41
SRP54P61011 HTD2-206ENST00000481972 1378 ntAPPRIS P1 TSL 2 BASIC17.59■□□□□ 0.41
SRP54P61011 PORCN-214ENST00000537758 1371 ntAPPRIS ALT1 TSL 1 (best) BASIC17.59■□□□□ 0.41
SRP54P61011 MICU3-201ENST00000318063 3992 ntAPPRIS P2 TSL 1 (best) BASIC17.59■□□□□ 0.41
SRP54P61011 EXOSC4-201ENST00000316052 887 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
SRP54P61011 RBM17P3-201ENST00000417687 1192 ntBASIC17.59■□□□□ 0.41
SRP54P61011 LINC01237-203ENST00000430555 843 ntTSL 4 BASIC17.59■□□□□ 0.41
SRP54P61011 FIGNL1-207ENST00000435566 593 ntTSL 4 BASIC17.59■□□□□ 0.41
SRP54P61011 TSTD3-201ENST00000452647 962 ntAPPRIS P2 TSL 2 BASIC17.59■□□□□ 0.41
SRP54P61011 RCHY1-208ENST00000512706 1011 ntTSL 3 BASIC17.59■□□□□ 0.41
SRP54P61011 GOLGA7-203ENST00000518270 808 ntAPPRIS P1 TSL 5 BASIC17.59■□□□□ 0.41
SRP54P61011 MOK-208ENST00000519058 917 ntTSL 2 BASIC17.59■□□□□ 0.41
SRP54P61011 ATP5G2-204ENST00000549164 745 ntAPPRIS P1 TSL 3 BASIC17.59■□□□□ 0.41
SRP54P61011 ATP5G2-209ENST00000602871 668 ntAPPRIS P1 TSL 2 BASIC17.59■□□□□ 0.41
SRP54P61011 AL355877.3-201ENST00000622820 899 ntBASIC17.59■□□□□ 0.41
SRP54P61011 MCRIP2-211ENST00000629534 341 ntTSL 2 BASIC17.59■□□□□ 0.41
SRP54P61011 KMT5A-201ENST00000330479 3069 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
SRP54P61011 LEMD2-214ENST00000614475 2883 ntAPPRIS P1 TSL 5 BASIC17.59■□□□□ 0.41
SRP54P61011 DOC2B-203ENST00000613549 6048 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
SRP54P61011 ITGB4-201ENST00000200181 5919 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
SRP54P61011 IL4I1-201ENST00000341114 2349 ntAPPRIS P4 TSL 1 (best) BASIC17.59■□□□□ 0.41
SRP54P61011 APBB1-215ENST00000608394 2128 ntTSL 5 BASIC17.59■□□□□ 0.41
SRP54P61011 APBB1-222ENST00000610474 2147 ntTSL 5 BASIC17.59■□□□□ 0.41
SRP54P61011 HOXC11-201ENST00000243082 2039 ntTSL 3 BASIC17.59■□□□□ 0.41
SRP54P61011 PRODH-205ENST00000420436 2034 ntAPPRIS ALT2 TSL 2 BASIC17.59■□□□□ 0.41
SRP54P61011 DUOXA1-201ENST00000267803 1996 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
SRP54P61011 ZSWIM8-213ENST00000603114 5919 ntTSL 5 BASIC17.59■□□□□ 0.41
SRP54P61011 GCGR-202ENST00000570996 1872 ntAPPRIS ALT2 TSL 2 BASIC17.58■□□□□ 0.41
SRP54P61011 CNOT6-202ENST00000393356 6303 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
SRP54P61011 WDR1-205ENST00000502702 1691 ntTSL 5 BASIC17.58■□□□□ 0.41
SRP54P61011 PPP2R2C-206ENST00000507294 1667 ntTSL 2 BASIC17.58■□□□□ 0.41
SRP54P61011 FAM72B-207ENST00000619376 1659 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
SRP54P61011 SOCS3-201ENST00000330871 2734 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
SRP54P61011 GFI1B-208ENST00000636263 1604 ntTSL 5 BASIC17.58■□□□□ 0.41
SRP54P61011 LARP4-210ENST00000522085 1577 ntTSL 2 BASIC17.58■□□□□ 0.41
SRP54P61011 PLPPR2-208ENST00000591608 2552 ntAPPRIS ALT2 TSL 2 BASIC17.58■□□□□ 0.41
SRP54P61011 OXSR1-201ENST00000311806 4553 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
SRP54P61011 CD151-203ENST00000397421 1486 ntAPPRIS P2 TSL 1 (best) BASIC17.58■□□□□ 0.41
SRP54P61011 CCDC188-201ENST00000439765 1475 ntAPPRIS P1 TSL 5 BASIC17.58■□□□□ 0.41
SRP54P61011 USP49-202ENST00000373010 2446 ntTSL 5 BASIC17.58■□□□□ 0.41
SRP54P61011 ABCB9-202ENST00000344275 2394 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
SRP54P61011 SYNE4-201ENST00000324444 1354 ntAPPRIS P3 TSL 5 BASIC17.58■□□□□ 0.4
SRP54P61011 AC011840.1-202ENST00000436477 1351 ntTSL 2 BASIC17.58■□□□□ 0.4
SRP54P61011 ZBTB48-202ENST00000377674 2293 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
SRP54P61011 RPS6KA1-203ENST00000374166 3131 ntTSL 5 BASIC17.58■□□□□ 0.4
SRP54P61011 TMEM89-201ENST00000330862 662 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
SRP54P61011 Metazoa_SRP.28-201ENST00000366402 260 ntBASIC17.58■□□□□ 0.4
SRP54P61011 RAB24-204ENST00000393611 1236 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
SRP54P61011 NCBP2-AS1-201ENST00000447775 562 ntTSL 5 BASIC17.58■□□□□ 0.4
SRP54P61011 SMN1-203ENST00000503079 1219 ntTSL 5 BASIC17.58■□□□□ 0.4
SRP54P61011 AC092725.1-201ENST00000565783 499 ntTSL 4 BASIC17.58■□□□□ 0.4
SRP54P61011 AC068594.1-202ENST00000581657 749 ntTSL 3 BASIC17.58■□□□□ 0.4
SRP54P61011 RLN3-202ENST00000585987 541 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
SRP54P61011 MTDHP3-201ENST00000594186 672 ntBASIC17.58■□□□□ 0.4
SRP54P61011 AP001269.4-201ENST00000609611 512 ntBASIC17.58■□□□□ 0.4
SRP54P61011 AC005632.4-201ENST00000613759 431 ntTSL 3 BASIC17.58■□□□□ 0.4
SRP54P61011 MIB2-203ENST00000378712 2890 ntTSL 2 BASIC17.58■□□□□ 0.4
SRP54P61011 SPNS1-204ENST00000352260 1948 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
SRP54P61011 MFSD2A-203ENST00000420632 1914 ntTSL 2 BASIC17.58■□□□□ 0.4
SRP54P61011 WBP2-219ENST00000626827 1867 ntTSL 5 BASIC17.58■□□□□ 0.4
SRP54P61011 PKD1P1-201ENST00000458669 6805 ntBASIC17.58■□□□□ 0.4
SRP54P61011 DDX42-202ENST00000389924 3939 ntAPPRIS P1 TSL 5 BASIC17.58■□□□□ 0.4
SRP54P61011 AC020916.1-201ENST00000587762 1774 ntBASIC17.58■□□□□ 0.4
SRP54P61011 SIGIRR-203ENST00000431843 1720 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
SRP54P61011 RNF167-205ENST00000571816 1728 ntAPPRIS P3 TSL 5 BASIC17.58■□□□□ 0.4
SRP54P61011 MYC-207ENST00000621592 2366 ntAPPRIS ALT1 TSL 1 (best) BASIC17.58■□□□□ 0.4
SRP54P61011 AC093503.3-201ENST00000624917 2352 ntBASIC17.58■□□□□ 0.4
SRP54P61011 ZNF286A-204ENST00000464847 5616 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
SRP54P61011 PLEKHB2-204ENST00000409158 2277 ntTSL 2 BASIC17.58■□□□□ 0.4
SRP54P61011 DMKN-213ENST00000447113 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.4
SRP54P61011 CYR61-201ENST00000451137 2290 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
SRP54P61011 TRAM1L1-201ENST00000310754 2023 ntAPPRIS P1 BASIC17.57■□□□□ 0.4
SRP54P61011 AMZ2-203ENST00000392720 1378 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
SRP54P61011 MLXIP-201ENST00000319080 8427 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
SRP54P61011 MSLN-207ENST00000566549 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
SRP54P61011 HLA-A-201ENST00000376802 1334 ntBASIC17.57■□□□□ 0.4
SRP54P61011 AC022898.2-201ENST00000616822 1312 ntBASIC17.57■□□□□ 0.4
SRP54P61011 AC097374.2-201ENST00000618617 1306 ntBASIC17.57■□□□□ 0.4
SRP54P61011 ST3GAL3-206ENST00000351035 2377 ntTSL 5 BASIC17.57■□□□□ 0.4
SRP54P61011 FAM213B-205ENST00000444521 2827 ntAPPRIS ALT2 TSL 2 BASIC17.57■□□□□ 0.4
SRP54P61011 SERF1B-202ENST00000380751 703 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
SRP54P61011 PPIE-208ENST00000470213 927 ntTSL 3 BASIC17.57■□□□□ 0.4
SRP54P61011 DUTP2-201ENST00000519164 463 ntBASIC17.57■□□□□ 0.4
SRP54P61011 AC099805.1-202ENST00000519927 1057 ntTSL 5 BASIC17.57■□□□□ 0.4
SRP54P61011 PENK-208ENST00000523051 772 ntTSL 5 BASIC17.57■□□□□ 0.4
SRP54P61011 AL162171.1-201ENST00000556328 718 ntTSL 3 BASIC17.57■□□□□ 0.4
SRP54P61011 ADAM10-217ENST00000561288 583 ntTSL 3 BASIC17.57■□□□□ 0.4
SRP54P61011 RPS15A-205ENST00000565420 802 ntAPPRIS P1 TSL 2 BASIC17.57■□□□□ 0.4
SRP54P61011 FAM25C-201ENST00000617224 319 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
SRP54P61011 IQSEC2-202ENST00000396435 6015 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
SRP54P61011 CAMKK2-207ENST00000404169 2116 ntAPPRIS P4 TSL 1 (best) BASIC17.57■□□□□ 0.4
SRP54P61011 MARK4-210ENST00000620044 2105 ntTSL 5 BASIC17.57■□□□□ 0.4
SRP54P61011 OTOP2-202ENST00000580223 2086 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
SRP54P61011 HYAL1-203ENST00000395143 1522 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
SRP54P61011 PLCL2-204ENST00000615277 4147 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
SRP54P61011 CXADR-201ENST00000284878 6254 ntAPPRIS P3 TSL 1 (best) BASIC17.57■□□□□ 0.4
SRP54P61011 SP100-208ENST00000427101 1922 ntTSL 2 BASIC17.57■□□□□ 0.4
SRP54P61011 AC087457.1-201ENST00000503496 2727 ntTSL 2 BASIC17.56■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 44.4 ms