Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 SLC9A3-AS1-204ENST00000606288 791 ntTSL 2 BASIC24.54■■□□□ 1.52
MSH6P52701 AL136317.3-201ENST00000618497 906 ntBASIC24.54■■□□□ 1.52
MSH6P52701 NFIB-212ENST00000622520 1274 ntTSL 5 BASIC24.54■■□□□ 1.52
MSH6P52701 HIST1H3D-202ENST00000635200 948 ntAPPRIS P1 TSL 3 BASIC24.54■■□□□ 1.52
MSH6P52701 SIRPAP1-201ENST00000448467 1770 ntBASIC24.54■■□□□ 1.52
MSH6P52701 CTBP2-205ENST00000411419 2036 ntAPPRIS P1 TSL 1 (best) BASIC24.54■■□□□ 1.52
MSH6P52701 IL17RE-206ENST00000454190 2757 ntTSL 2 BASIC24.54■■□□□ 1.52
MSH6P52701 SOX2-201ENST00000325404 2513 ntAPPRIS P1 BASIC24.54■■□□□ 1.52
MSH6P52701 FAM217A-201ENST00000274673 2265 ntAPPRIS P1 TSL 1 (best) BASIC24.54■■□□□ 1.52
MSH6P52701 GNRHR2-201ENST00000312753 1599 ntTSL 1 (best) BASIC24.54■■□□□ 1.52
MSH6P52701 BCS1L-202ENST00000392109 1583 ntAPPRIS P1 TSL 1 (best) BASIC24.54■■□□□ 1.52
MSH6P52701 BCS1L-204ENST00000392111 1584 ntAPPRIS P1 TSL 1 (best) BASIC24.54■■□□□ 1.52
MSH6P52701 SLC7A9-202ENST00000587772 1568 ntAPPRIS P1 TSL 1 (best) BASIC24.54■■□□□ 1.52
MSH6P52701 ATOH8-201ENST00000306279 2438 ntAPPRIS P1 TSL 1 (best) BASIC24.54■■□□□ 1.52
MSH6P52701 MROH1-202ENST00000423230 1712 ntTSL 1 (best) BASIC24.54■■□□□ 1.52
MSH6P52701 FXYD1-202ENST00000455515 594 ntAPPRIS P1 TSL 2 BASIC24.54■■□□□ 1.52
MSH6P52701 FAM72B-205ENST00000471903 676 ntTSL 5 BASIC24.54■■□□□ 1.52
MSH6P52701 AKR1E2-212ENST00000532248 844 ntTSL 1 (best) BASIC24.54■■□□□ 1.52
MSH6P52701 VPS29-207ENST00000549970 818 ntTSL 3 BASIC24.54■■□□□ 1.52
MSH6P52701 EEF1AKMT3-204ENST00000551420 836 ntTSL 2 BASIC24.54■■□□□ 1.52
MSH6P52701 BLOC1S6-202ENST00000562384 494 ntTSL 4 BASIC24.54■■□□□ 1.52
MSH6P52701 AL732314.4-201ENST00000627627 515 ntTSL 4 BASIC24.54■■□□□ 1.52
MSH6P52701 HNRNPH1-250ENST00000630639 123 ntTSL 5 BASIC24.54■■□□□ 1.52
MSH6P52701 PSMC5-202ENST00000375812 1494 ntTSL 2 BASIC24.54■■□□□ 1.52
MSH6P52701 ANXA4-202ENST00000409920 1414 ntTSL 1 (best) BASIC24.53■■□□□ 1.52
MSH6P52701 PLD3-205ENST00000409419 1966 ntAPPRIS P1 TSL 5 BASIC24.53■■□□□ 1.52
MSH6P52701 KMT5B-203ENST00000401547 2666 ntTSL 1 (best) BASIC24.53■■□□□ 1.52
MSH6P52701 NEIL3-201ENST00000264596 2408 ntAPPRIS P1 TSL 1 (best) BASIC24.53■■□□□ 1.52
MSH6P52701 TEAD2-202ENST00000377214 2440 ntAPPRIS ALT1 TSL 2 BASIC24.53■■□□□ 1.52
MSH6P52701 PIANP-204ENST00000540656 2432 ntAPPRIS P3 TSL 2 BASIC24.53■■□□□ 1.52
MSH6P52701 SMARCD3-202ENST00000356800 1669 ntTSL 1 (best) BASIC24.53■■□□□ 1.52
MSH6P52701 LTC4S-201ENST00000292596 666 ntAPPRIS P1 TSL 1 (best) BASIC24.53■■□□□ 1.52
MSH6P52701 SNHG5-201ENST00000369605 1032 ntTSL 1 (best) BASIC24.53■■□□□ 1.52
MSH6P52701 IGHV3OR16-6-201ENST00000568775 360 ntBASIC24.53■■□□□ 1.52
MSH6P52701 AC217774.2-201ENST00000580347 560 ntTSL 4 BASIC24.53■■□□□ 1.52
MSH6P52701 TINAGL1-201ENST00000271064 2187 ntAPPRIS P3 TSL 1 (best) BASIC24.53■■□□□ 1.52
MSH6P52701 SLC12A2-201ENST00000262461 6885 ntAPPRIS P3 TSL 1 (best) BASIC24.53■■□□□ 1.52
MSH6P52701 MLF2-201ENST00000203630 1969 ntAPPRIS P1 TSL 1 (best) BASIC24.53■■□□□ 1.52
MSH6P52701 CLEC10A-204ENST00000571664 1442 ntAPPRIS ALT2 TSL 1 (best) BASIC24.52■■□□□ 1.52
MSH6P52701 FFAR3-201ENST00000327809 1796 ntAPPRIS P1 TSL 1 (best) BASIC24.52■■□□□ 1.52
MSH6P52701 KRT1-201ENST00000252244 2451 ntAPPRIS P1 TSL 1 (best) BASIC24.52■■□□□ 1.52
MSH6P52701 PLXNB2-214ENST00000614805 1387 ntTSL 5 BASIC24.52■■□□□ 1.52
MSH6P52701 RGS11-204ENST00000397770 2390 ntAPPRIS P1 TSL 1 (best) BASIC24.52■■□□□ 1.52
MSH6P52701 DPM2-201ENST00000314392 1542 ntAPPRIS P1 TSL 1 (best) BASIC24.52■■□□□ 1.52
MSH6P52701 FAM76B-204ENST00000536839 2546 ntAPPRIS ALT1 TSL 5 BASIC24.52■■□□□ 1.52
MSH6P52701 AKIRIN2-201ENST00000257787 1662 ntAPPRIS P1 TSL 1 (best) BASIC24.52■■□□□ 1.52
MSH6P52701 LIMS2-204ENST00000409286 1678 ntTSL 2 BASIC24.52■■□□□ 1.52
MSH6P52701 AQP11-201ENST00000313578 2152 ntAPPRIS P1 TSL 1 (best) BASIC24.52■■□□□ 1.52
MSH6P52701 FOXC2-201ENST00000320354 2478 ntAPPRIS P1 BASIC24.52■■□□□ 1.52
MSH6P52701 CHGA-202ENST00000334654 1474 ntTSL 1 (best) BASIC24.52■■□□□ 1.52
MSH6P52701 GSDMD-201ENST00000262580 1762 ntAPPRIS P2 TSL 1 (best) BASIC24.52■■□□□ 1.52
MSH6P52701 METTL26-202ENST00000338401 544 ntTSL 1 (best) BASIC24.52■■□□□ 1.52
MSH6P52701 BAD-202ENST00000394531 631 ntTSL 3 BASIC24.52■■□□□ 1.52
MSH6P52701 TFAMP1-201ENST00000412727 736 ntBASIC24.52■■□□□ 1.52
MSH6P52701 AC013270.1-201ENST00000425578 440 ntTSL 2 BASIC24.52■■□□□ 1.52
MSH6P52701 AC055876.3-201ENST00000431496 288 ntBASIC24.52■■□□□ 1.52
MSH6P52701 TSPY16P-201ENST00000449843 468 ntBASIC24.52■■□□□ 1.52
MSH6P52701 PARD6G-203ENST00000470488 596 ntTSL 1 (best) BASIC24.52■■□□□ 1.52
MSH6P52701 AC051619.7-201ENST00000568314 623 ntBASIC24.52■■□□□ 1.52
MSH6P52701 CECR7-204ENST00000609932 568 ntTSL 2 BASIC24.52■■□□□ 1.52
MSH6P52701 AC138649.4-201ENST00000612222 287 ntBASIC24.52■■□□□ 1.52
MSH6P52701 CBX3P2-201ENST00000579647 1429 ntTSL 2 BASIC24.52■■□□□ 1.52
MSH6P52701 AL049757.1-201ENST00000616842 1596 ntBASIC24.52■■□□□ 1.52
MSH6P52701 CMTM4-201ENST00000330687 3414 ntTSL 1 (best) BASIC24.52■■□□□ 1.52
MSH6P52701 AC093484.2-201ENST00000580996 2166 ntBASIC24.52■■□□□ 1.52
MSH6P52701 ASAP2-201ENST00000281419 5712 ntAPPRIS P3 TSL 1 (best) BASIC24.51■■□□□ 1.51
MSH6P52701 AEBP2-204ENST00000398864 5099 ntAPPRIS P4 TSL 1 (best) BASIC24.51■■□□□ 1.51
MSH6P52701 WDR45-240ENST00000635003 1376 ntTSL 3 BASIC24.51■■□□□ 1.51
MSH6P52701 CEACAM16-202ENST00000587331 1692 ntAPPRIS P1 TSL 1 (best) BASIC24.51■■□□□ 1.51
MSH6P52701 MYEOV-202ENST00000441339 1996 ntAPPRIS P3 TSL 2 BASIC24.51■■□□□ 1.51
MSH6P52701 SLC34A3-201ENST00000361134 2124 ntAPPRIS P1 TSL 2 BASIC24.51■■□□□ 1.51
MSH6P52701 CRLF3-201ENST00000324238 2957 ntAPPRIS P1 TSL 1 (best) BASIC24.51■■□□□ 1.51
MSH6P52701 HGNC:18790-211ENST00000621129 1483 ntAPPRIS P1 TSL 1 (best) BASIC24.51■■□□□ 1.51
MSH6P52701 SAMD11-213ENST00000618181 2179 ntAPPRIS ALT2 TSL 5 BASIC24.51■■□□□ 1.51
MSH6P52701 AL032819.2-201ENST00000624543 2162 ntBASIC24.51■■□□□ 1.51
MSH6P52701 PDE9A-203ENST00000335440 1728 ntTSL 1 (best) BASIC24.51■■□□□ 1.51
MSH6P52701 KLC2-204ENST00000394067 2898 ntAPPRIS P1 TSL 1 (best) BASIC24.51■■□□□ 1.51
MSH6P52701 ISPD-201ENST00000399310 1709 ntTSL 1 (best) BASIC24.51■■□□□ 1.51
MSH6P52701 GPAT2P1-202ENST00000471661 1569 ntTSL 2 BASIC24.51■■□□□ 1.51
MSH6P52701 AC006116.8-202ENST00000587620 1550 ntBASIC24.51■■□□□ 1.51
MSH6P52701 NFIB-207ENST00000397579 3129 ntTSL 5 BASIC24.51■■□□□ 1.51
MSH6P52701 SELENOH-201ENST00000388857 833 ntAPPRIS P2 TSL 1 (best) BASIC24.51■■□□□ 1.51
MSH6P52701 ZDHHC20-IT1-201ENST00000417513 440 ntTSL 3 BASIC24.51■■□□□ 1.51
MSH6P52701 HLA-V-201ENST00000429037 534 ntBASIC24.51■■□□□ 1.51
MSH6P52701 CU104787.1-201ENST00000624155 288 ntTSL 1 (best) BASIC24.51■■□□□ 1.51
MSH6P52701 ANKRD13D-201ENST00000308440 2219 ntTSL 2 BASIC24.51■■□□□ 1.51
MSH6P52701 FUT8-AS1-201ENST00000621019 1521 ntBASIC24.51■■□□□ 1.51
MSH6P52701 TCP11L2-203ENST00000547153 1788 ntTSL 2 BASIC24.5■■□□□ 1.51
MSH6P52701 PARD3-213ENST00000545260 5740 ntAPPRIS ALT2 TSL 1 (best) BASIC24.5■■□□□ 1.51
MSH6P52701 SEL1L-204ENST00000555824 1631 ntTSL 1 (best) BASIC24.5■■□□□ 1.51
MSH6P52701 ABCC6-209ENST00000640696 1893 ntTSL 5 BASIC24.5■■□□□ 1.51
MSH6P52701 AIRE-201ENST00000291582 2257 ntAPPRIS P1 TSL 1 (best) BASIC24.5■■□□□ 1.51
MSH6P52701 BIN2-210ENST00000615107 2255 ntAPPRIS P1 TSL 1 (best) BASIC24.5■■□□□ 1.51
MSH6P52701 TTC7A-201ENST00000319190 5157 ntAPPRIS P1 TSL 2 BASIC24.5■■□□□ 1.51
MSH6P52701 GUCA2A-201ENST00000357001 569 ntAPPRIS P1 TSL 1 (best) BASIC24.5■■□□□ 1.51
MSH6P52701 NABP1-203ENST00000409510 843 ntTSL 5 BASIC24.5■■□□□ 1.51
MSH6P52701 TIMM8BP1-201ENST00000452384 211 ntBASIC24.5■■□□□ 1.51
MSH6P52701 MEIS3P1-201ENST00000495167 958 ntBASIC24.5■■□□□ 1.51
MSH6P52701 AC095060.1-201ENST00000502455 549 ntTSL 4 BASIC24.5■■□□□ 1.51
MSH6P52701 CXCL1P1-201ENST00000502804 216 ntBASIC24.5■■□□□ 1.51
Retrieved 100 of 98,524 protein–RNA pairs in 32.3 ms