Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 AC025048.6-201ENST00000634326 1161 ntBASIC20.92■□□□□ 0.94
SCN4AP35499 CPZ-202ENST00000360986 2267 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
SCN4AP35499 NFIL3-201ENST00000297689 2085 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
SCN4AP35499 DISC1-212ENST00000535983 2505 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
SCN4AP35499 RABEPK-206ENST00000628863 1537 ntTSL 5 BASIC20.92■□□□□ 0.94
SCN4AP35499 ASZ1-201ENST00000284629 1865 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
SCN4AP35499 RELA-201ENST00000308639 2681 ntAPPRIS ALT1 TSL 1 (best) BASIC20.92■□□□□ 0.94
SCN4AP35499 RBM14-202ENST00000393979 1426 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
SCN4AP35499 CRB3-203ENST00000598494 1443 ntAPPRIS ALT2 TSL 2 BASIC20.92■□□□□ 0.94
SCN4AP35499 CTBP2-202ENST00000334808 2130 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
SCN4AP35499 ESPNP-201ENST00000270691 2015 ntBASIC20.92■□□□□ 0.94
SCN4AP35499 FBLN1-204ENST00000402984 2355 ntTSL 5 BASIC20.92■□□□□ 0.94
SCN4AP35499 MFSD11-219ENST00000593181 1922 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
SCN4AP35499 FAM110A-203ENST00000381939 1737 ntAPPRIS P1 TSL 3 BASIC20.92■□□□□ 0.94
SCN4AP35499 R3HDML-201ENST00000217043 1377 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
SCN4AP35499 TMEM175-222ENST00000622959 1967 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
SCN4AP35499 AC097637.2-201ENST00000624096 1997 ntBASIC20.92■□□□□ 0.94
SCN4AP35499 C1orf43-203ENST00000368516 872 ntTSL 2 BASIC20.92■□□□□ 0.94
SCN4AP35499 RPL30-202ENST00000396070 440 ntTSL 2 BASIC20.92■□□□□ 0.94
SCN4AP35499 IQSEC2-204ENST00000485377 835 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
SCN4AP35499 RBAKDN-201ENST00000498308 514 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
SCN4AP35499 SNCA-209ENST00000506244 570 ntAPPRIS P1 TSL 2 BASIC20.92■□□□□ 0.94
SCN4AP35499 AC141424.1-203ENST00000599026 887 ntTSL 5 BASIC20.92■□□□□ 0.94
SCN4AP35499 FBLN1-201ENST00000262722 2251 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
SCN4AP35499 ATP6V0E1-203ENST00000519374 1433 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
SCN4AP35499 VBP1-201ENST00000286428 1686 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
SCN4AP35499 CYGB-201ENST00000293230 2158 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
SCN4AP35499 RNF135-205ENST00000535306 2098 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
SCN4AP35499 AL590787.1-201ENST00000568856 1315 ntBASIC20.91■□□□□ 0.94
SCN4AP35499 MATN4-202ENST00000360607 2127 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
SCN4AP35499 PIP4K2B-204ENST00000619039 5734 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
SCN4AP35499 UNKL-205ENST00000397464 2180 ntTSL 2 BASIC20.91■□□□□ 0.94
SCN4AP35499 SNX19-207ENST00000528555 1506 ntTSL 2 BASIC20.91■□□□□ 0.94
SCN4AP35499 USP39-202ENST00000409025 1946 ntTSL 5 BASIC20.91■□□□□ 0.94
SCN4AP35499 CGB3-201ENST00000357383 877 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
SCN4AP35499 CGB2-201ENST00000359342 627 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
SCN4AP35499 RNF212-203ENST00000433731 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC20.91■□□□□ 0.94
SCN4AP35499 LEPROTL1-203ENST00000518001 589 ntTSL 4 BASIC20.91■□□□□ 0.94
SCN4AP35499 STMN4-207ENST00000523048 1224 ntTSL 2 BASIC20.91■□□□□ 0.94
SCN4AP35499 GALNT9-208ENST00000541995 1001 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
SCN4AP35499 GOLGA2-215ENST00000639983 1038 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
SCN4AP35499 AL358472.5-202ENST00000641448 1267 ntBASIC20.91■□□□□ 0.94
SCN4AP35499 UBXN6-202ENST00000394765 1809 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
SCN4AP35499 AL049812.1-201ENST00000432563 2267 ntBASIC20.91■□□□□ 0.94
SCN4AP35499 GSEC-201ENST00000626810 2289 ntTSL 2 BASIC20.91■□□□□ 0.94
SCN4AP35499 AC087500.1-202ENST00000571689 1715 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
SCN4AP35499 ITGBL1-206ENST00000618057 2368 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
SCN4AP35499 AC125807.1-201ENST00000483097 614 ntBASIC20.9■□□□□ 0.94
SCN4AP35499 AC095060.1-201ENST00000502455 549 ntTSL 4 BASIC20.9■□□□□ 0.94
SCN4AP35499 TSC22D3-213ENST00000506081 956 ntTSL 5 BASIC20.9■□□□□ 0.94
SCN4AP35499 ATG10-207ENST00000513443 978 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
SCN4AP35499 AF131215.3-201ENST00000532453 639 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
SCN4AP35499 TUBA1A-203ENST00000546918 984 ntTSL 3 BASIC20.9■□□□□ 0.94
SCN4AP35499 THTPA-204ENST00000554970 569 ntTSL 4 BASIC20.9■□□□□ 0.94
SCN4AP35499 THTPA-206ENST00000556015 535 ntTSL 3 BASIC20.9■□□□□ 0.94
SCN4AP35499 AC027088.1-201ENST00000557966 1117 ntTSL 2 BASIC20.9■□□□□ 0.94
SCN4AP35499 CERNA1-201ENST00000559779 908 ntTSL 3 BASIC20.9■□□□□ 0.94
SCN4AP35499 TPGS2-220ENST00000610723 1426 ntTSL 3 BASIC20.9■□□□□ 0.94
SCN4AP35499 TMEM178A-206ENST00000618232 1286 ntTSL 5 BASIC20.9■□□□□ 0.94
SCN4AP35499 RAB5A-201ENST00000273047 2536 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
SCN4AP35499 GTF2IRD2-207ENST00000625377 1910 ntTSL 5 BASIC20.9■□□□□ 0.94
SCN4AP35499 NAF1-202ENST00000422287 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
SCN4AP35499 NKIRAS2-207ENST00000449471 1461 ntTSL 2 BASIC20.9■□□□□ 0.94
SCN4AP35499 SPG7-202ENST00000341316 2288 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
SCN4AP35499 IRF5-210ENST00000477535 1374 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
SCN4AP35499 MAP4K1-203ENST00000586296 1363 ntTSL 5 BASIC20.9■□□□□ 0.94
SCN4AP35499 NFKBID-210ENST00000606253 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
SCN4AP35499 GOLGA6L10-207ENST00000610657 1705 ntAPPRIS P2 TSL 2 BASIC20.9■□□□□ 0.94
SCN4AP35499 UBE2Z-201ENST00000360943 3122 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
SCN4AP35499 TTC29-201ENST00000325106 1785 ntAPPRIS P3 TSL 1 (best) BASIC20.9■□□□□ 0.94
SCN4AP35499 TTC29-205ENST00000504425 1777 ntAPPRIS ALT2 TSL 5 BASIC20.9■□□□□ 0.94
SCN4AP35499 LSM1-201ENST00000311351 1147 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
SCN4AP35499 LCE3E-201ENST00000368789 611 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
SCN4AP35499 SSR4-204ENST00000370087 745 ntAPPRIS P1 TSL 3 BASIC20.9■□□□□ 0.94
SCN4AP35499 TCEAL3-202ENST00000372627 1113 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
SCN4AP35499 MIR943-201ENST00000401286 94 ntBASIC20.9■□□□□ 0.94
SCN4AP35499 UFL1-AS1-201ENST00000430796 548 ntTSL 3 BASIC20.9■□□□□ 0.94
SCN4AP35499 AC082651.1-201ENST00000478468 832 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
SCN4AP35499 RN7SL589P-201ENST00000481268 310 ntBASIC20.9■□□□□ 0.94
SCN4AP35499 AHSA1-202ENST00000535854 1173 ntTSL 2 BASIC20.9■□□□□ 0.94
SCN4AP35499 SPDYE22P-201ENST00000582158 798 ntBASIC20.9■□□□□ 0.94
SCN4AP35499 AC040963.1-202ENST00000589729 644 ntTSL 5 BASIC20.9■□□□□ 0.94
SCN4AP35499 AL158211.3-201ENST00000607385 239 ntBASIC20.9■□□□□ 0.94
SCN4AP35499 PCGF6-201ENST00000337211 1950 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
SCN4AP35499 CLEC18A-202ENST00000393701 1955 ntAPPRIS P2 TSL 1 (best) BASIC20.9■□□□□ 0.94
SCN4AP35499 CLEC18C-203ENST00000541793 1955 ntAPPRIS P2 TSL 1 (best) BASIC20.9■□□□□ 0.94
SCN4AP35499 VPS53-201ENST00000291074 2656 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
SCN4AP35499 KLHDC1-201ENST00000359332 2691 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
SCN4AP35499 PCMTD1-206ENST00000521344 1712 ntTSL 3 BASIC20.89■□□□□ 0.94
SCN4AP35499 AC005082.1-201ENST00000413042 2259 ntBASIC20.89■□□□□ 0.94
SCN4AP35499 C16orf59-210ENST00000569496 1911 ntAPPRIS ALT2 TSL 5 BASIC20.89■□□□□ 0.94
SCN4AP35499 GABARAPL1-201ENST00000266458 1957 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
SCN4AP35499 SLC16A3-221ENST00000617373 2048 ntAPPRIS P1 TSL 5 BASIC20.89■□□□□ 0.93
SCN4AP35499 SLC16A3-222ENST00000619321 2015 ntAPPRIS P1 TSL 5 BASIC20.89■□□□□ 0.93
SCN4AP35499 PNKD-201ENST00000248451 758 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
SCN4AP35499 AC002056.1-201ENST00000395613 760 ntBASIC20.89■□□□□ 0.93
SCN4AP35499 TREML5P-201ENST00000421694 576 ntBASIC20.89■□□□□ 0.93
SCN4AP35499 FAM58DP-201ENST00000428076 619 ntBASIC20.89■□□□□ 0.93
SCN4AP35499 TMEM176B-205ENST00000450753 1006 ntTSL 2 BASIC20.89■□□□□ 0.93
SCN4AP35499 RN7SL692P-201ENST00000464677 288 ntBASIC20.89■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 30.6 ms