Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 COX6C-204ENST00000520271 571 ntAPPRIS P1 TSL 2 BASIC16.36■□□□□ 0.21
MSX1P28360 PNN-202ENST00000553331 656 ntTSL 3 BASIC16.36■□□□□ 0.21
MSX1P28360 AL442663.3-201ENST00000554737 1000 ntTSL 3 BASIC16.36■□□□□ 0.21
MSX1P28360 AC091304.2-201ENST00000564639 760 ntBASIC16.36■□□□□ 0.21
MSX1P28360 AC012615.1-201ENST00000565797 1299 ntBASIC16.36■□□□□ 0.21
MSX1P28360 ANAPC11-217ENST00000579978 575 ntAPPRIS P1 TSL 2 BASIC16.36■□□□□ 0.21
MSX1P28360 AC104971.2-201ENST00000588144 1209 ntTSL 2 BASIC16.36■□□□□ 0.21
MSX1P28360 LINC01711-201ENST00000598340 967 ntBASIC16.36■□□□□ 0.21
MSX1P28360 AC243773.1-201ENST00000614759 544 ntTSL 5 BASIC16.36■□□□□ 0.21
MSX1P28360 AC124864.1-201ENST00000623408 392 ntBASIC16.36■□□□□ 0.21
MSX1P28360 AC012183.1-201ENST00000625197 499 ntBASIC16.36■□□□□ 0.21
MSX1P28360 BMP2K-208ENST00000628286 3848 ntAPPRIS ALT2 TSL 5 BASIC16.36■□□□□ 0.21
MSX1P28360 LINC01714-202ENST00000635451 896 ntTSL 5 BASIC16.36■□□□□ 0.21
MSX1P28360 AC005865.2-201ENST00000505276 2303 ntTSL 2 BASIC16.36■□□□□ 0.21
MSX1P28360 TBC1D10C-209ENST00000542590 1659 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
MSX1P28360 RBFADN-201ENST00000562391 1350 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
MSX1P28360 AC120049.1-201ENST00000592638 2065 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
MSX1P28360 PAX1-201ENST00000398485 2838 ntAPPRIS P3 TSL 5 BASIC16.36■□□□□ 0.21
MSX1P28360 IL15-201ENST00000296545 2472 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
MSX1P28360 POLR3E-209ENST00000564209 2464 ntTSL 2 BASIC16.36■□□□□ 0.21
MSX1P28360 RIN1-205ENST00000530056 2122 ntTSL 2 BASIC16.36■□□□□ 0.21
MSX1P28360 APBB1-207ENST00000529519 1442 ntTSL 5 BASIC16.36■□□□□ 0.21
MSX1P28360 AC011416.4-201ENST00000639283 2195 ntTSL 5 BASIC16.36■□□□□ 0.21
MSX1P28360 ACSM2B-208ENST00000565322 1834 ntTSL 2 BASIC16.35■□□□□ 0.21
MSX1P28360 AC105285.1-202ENST00000499322 1866 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
MSX1P28360 DLGAP1-222ENST00000639615 1898 ntTSL 5 BASIC16.35■□□□□ 0.21
MSX1P28360 TBL3-205ENST00000568546 6803 ntAPPRIS P2 TSL 1 (best) BASIC16.35■□□□□ 0.21
MSX1P28360 C12orf65-202ENST00000366329 1901 ntAPPRIS P2 TSL 2 BASIC16.35■□□□□ 0.21
MSX1P28360 GGT3P-201ENST00000412448 2340 ntTSL 2 BASIC16.35■□□□□ 0.21
MSX1P28360 CAPN5-205ENST00000529629 2333 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
MSX1P28360 LINC01700-201ENST00000433952 1598 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
MSX1P28360 NCCRP1-201ENST00000339852 1978 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
MSX1P28360 UMOD-202ENST00000396134 2408 ntAPPRIS ALT2 TSL 2 BASIC16.35■□□□□ 0.21
MSX1P28360 FERMT2-204ENST00000399304 2082 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
MSX1P28360 SMPD3-211ENST00000568373 2073 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
MSX1P28360 INPP5F-203ENST00000369081 874 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
MSX1P28360 AC004975.2-201ENST00000442017 565 ntTSL 5 BASIC16.35■□□□□ 0.21
MSX1P28360 AC009078.2-202ENST00000463353 338 ntBASIC16.35■□□□□ 0.21
MSX1P28360 CARHSP1-205ENST00000562843 843 ntTSL 2 BASIC16.35■□□□□ 0.21
MSX1P28360 AC003688.1-201ENST00000577138 489 ntAPPRIS P1 TSL 3 BASIC16.35■□□□□ 0.21
MSX1P28360 FCGRT-210ENST00000596975 1054 ntTSL 5 BASIC16.35■□□□□ 0.21
MSX1P28360 AL592071.1-201ENST00000611956 408 ntBASIC16.35■□□□□ 0.21
MSX1P28360 AL031008.1-201ENST00000619963 541 ntBASIC16.35■□□□□ 0.21
MSX1P28360 GABBR1-204ENST00000377016 4299 ntTSL 5 BASIC16.35■□□□□ 0.21
MSX1P28360 MECP2-205ENST00000453960 1729 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
MSX1P28360 PYCR1-217ENST00000629768 1740 ntTSL 5 BASIC16.35■□□□□ 0.21
MSX1P28360 SLC8A3-203ENST00000357887 5259 ntTSL 5 BASIC16.35■□□□□ 0.21
MSX1P28360 SLC8A3-204ENST00000381269 5268 ntAPPRIS ALT1 TSL 1 (best) BASIC16.35■□□□□ 0.21
MSX1P28360 GRAP2-202ENST00000407075 1304 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
MSX1P28360 DKK1-201ENST00000373970 1790 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
MSX1P28360 LEFTY2-201ENST00000366820 2287 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
MSX1P28360 SERPINF2-202ENST00000382061 2265 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
MSX1P28360 WRNIP1-202ENST00000380769 3239 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
MSX1P28360 FAM124A-202ENST00000322475 4761 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
MSX1P28360 ATP6AP2-214ENST00000636287 1904 ntAPPRIS ALT2 TSL 5 BASIC16.35■□□□□ 0.21
MSX1P28360 CHD1L-204ENST00000431239 2907 ntTSL 5 BASIC16.35■□□□□ 0.21
MSX1P28360 GPD2-201ENST00000310454 6041 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
MSX1P28360 ENC1-201ENST00000302351 5520 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
MSX1P28360 FAM9A-202ENST00000543214 1544 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
MSX1P28360 ZDHHC4-205ENST00000396713 1552 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
MSX1P28360 NEFHP1-201ENST00000412845 2629 ntBASIC16.34■□□□□ 0.21
MSX1P28360 FCGRT-202ENST00000426395 1559 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
MSX1P28360 TDRKH-207ENST00000458431 2768 ntAPPRIS P2 TSL 1 (best) BASIC16.34■□□□□ 0.21
MSX1P28360 CBX1-201ENST00000225603 2232 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
MSX1P28360 MRPS5-201ENST00000272418 1652 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
MSX1P28360 PTPA-201ENST00000337738 2845 ntTSL 2 BASIC16.34■□□□□ 0.21
MSX1P28360 SIGIRR-203ENST00000431843 1720 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
MSX1P28360 SAMD11-212ENST00000617307 2314 ntAPPRIS ALT2 TSL 5 BASIC16.34■□□□□ 0.21
MSX1P28360 APLP2-210ENST00000528499 2530 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
MSX1P28360 CARHSP1-201ENST00000311052 746 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
MSX1P28360 MOS-201ENST00000311923 1041 ntAPPRIS P1 BASIC16.34■□□□□ 0.21
MSX1P28360 ZNF655-218ENST00000454654 571 ntTSL 4 BASIC16.34■□□□□ 0.21
MSX1P28360 TOB2P1-201ENST00000469761 992 ntBASIC16.34■□□□□ 0.21
MSX1P28360 VENTXP7-201ENST00000475503 772 ntBASIC16.34■□□□□ 0.21
MSX1P28360 TRPC2-202ENST00000526541 1189 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
MSX1P28360 MYL6-209ENST00000548293 753 ntAPPRIS P3 TSL 2 BASIC16.34■□□□□ 0.21
MSX1P28360 SPINT1-AS1-202ENST00000564302 643 ntTSL 2 BASIC16.34■□□□□ 0.21
MSX1P28360 AC011840.4-201ENST00000578471 627 ntBASIC16.34■□□□□ 0.21
MSX1P28360 TYROBP-205ENST00000585901 620 ntTSL 3 BASIC16.34■□□□□ 0.21
MSX1P28360 HNF4A-208ENST00000609795 1192 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
MSX1P28360 AL353801.3-201ENST00000609898 542 ntBASIC16.34■□□□□ 0.21
MSX1P28360 SCAMP4-213ENST00000621748 1172 ntAPPRIS P1 TSL 5 BASIC16.34■□□□□ 0.21
MSX1P28360 AL138752.2-201ENST00000540557 2591 ntAPPRIS P1 TSL 5 BASIC16.34■□□□□ 0.21
MSX1P28360 GAB3-203ENST00000424127 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
MSX1P28360 IFFO1-212ENST00000619571 2724 ntTSL 2 BASIC16.34■□□□□ 0.21
MSX1P28360 DUS1L-201ENST00000306796 2068 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
MSX1P28360 OTOP2-202ENST00000580223 2086 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
MSX1P28360 SLC22A1-203ENST00000457470 1452 ntTSL 5 BASIC16.34■□□□□ 0.21
MSX1P28360 SEL1L3-202ENST00000399878 4520 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
MSX1P28360 AP000997.3-201ENST00000623333 2250 ntBASIC16.34■□□□□ 0.21
MSX1P28360 IRF7-207ENST00000525445 1588 ntTSL 5 BASIC16.34■□□□□ 0.21
MSX1P28360 LRRC23-209ENST00000443597 1628 ntAPPRIS P4 TSL 1 (best) BASIC16.34■□□□□ 0.21
MSX1P28360 CEACAM16-202ENST00000587331 1692 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
MSX1P28360 NOMO2-212ENST00000622306 4252 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.21
MSX1P28360 ISY1-201ENST00000273541 1704 ntTSL 1 (best) BASIC16.33■□□□□ 0.21
MSX1P28360 FAM157B-201ENST00000446912 1795 ntTSL 2 BASIC16.33■□□□□ 0.21
MSX1P28360 NIPAL2-202ENST00000430223 4496 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
MSX1P28360 GRAMD2B-219ENST00000544396 2822 ntTSL 2 BASIC16.33■□□□□ 0.21
MSX1P28360 ALDH3A1-206ENST00000457500 1925 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
MSX1P28360 NRXN1-209ENST00000405581 5078 ntTSL 1 (best) BASIC16.33■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 50.7 ms