Protein–RNA interactions for Protein: P22223

CDH3, Cadherin-3, humanhuman

Predictions only

Length 829 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3P22223 MALAT1-215ENST00000619449 794 ntTSL 3 BASIC17.5■□□□□ 0.39
CDH3P22223 AC124864.1-201ENST00000623408 392 ntBASIC17.5■□□□□ 0.39
CDH3P22223 ZBTB47-202ENST00000505904 2456 ntTSL 5 BASIC17.5■□□□□ 0.39
CDH3P22223 BRPF1-203ENST00000424362 4712 ntAPPRIS ALT1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CDH3P22223 HMGA1-201ENST00000311487 1920 ntAPPRIS P4 TSL 1 (best) BASIC17.5■□□□□ 0.39
CDH3P22223 CIAO1-203ENST00000488633 1533 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CDH3P22223 LUC7L-221ENST00000629543 1520 ntTSL 5 BASIC17.5■□□□□ 0.39
CDH3P22223 EMILIN3-201ENST00000332312 3796 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CDH3P22223 SIKE1-201ENST00000060969 2190 ntAPPRIS P3 TSL 1 (best) BASIC17.5■□□□□ 0.39
CDH3P22223 ENPP1-201ENST00000360971 7442 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CDH3P22223 USP49-202ENST00000373010 2446 ntTSL 5 BASIC17.5■□□□□ 0.39
CDH3P22223 IL34-201ENST00000288098 1607 ntAPPRIS P2 TSL 1 (best) BASIC17.5■□□□□ 0.39
CDH3P22223 UNC5CL-202ENST00000373164 1620 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CDH3P22223 CTSA-201ENST00000191018 1898 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
CDH3P22223 MIB2-201ENST00000355826 3290 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
CDH3P22223 VPS37A-201ENST00000324849 4906 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CDH3P22223 CHUK-201ENST00000370397 3625 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CDH3P22223 KCNC2-203ENST00000393288 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
CDH3P22223 SRSF1-208ENST00000584773 1317 ntTSL 5 BASIC17.49■□□□□ 0.39
CDH3P22223 GUCA1A-202ENST00000372958 1575 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CDH3P22223 MRPS5-201ENST00000272418 1652 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CDH3P22223 TIMM8A-201ENST00000372902 1664 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CDH3P22223 PTX4-201ENST00000293922 1422 ntAPPRIS P2 TSL 1 (best) BASIC17.49■□□□□ 0.39
CDH3P22223 MEPCE-201ENST00000310512 3030 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CDH3P22223 DMPK-204ENST00000447742 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
CDH3P22223 SMIM25-203ENST00000425497 2010 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
CDH3P22223 PNOC-201ENST00000301908 1200 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CDH3P22223 SWI5-201ENST00000320188 980 ntAPPRIS P3 TSL 1 (best) BASIC17.49■□□□□ 0.39
CDH3P22223 PPIH-202ENST00000372549 327 ntTSL 3 BASIC17.49■□□□□ 0.39
CDH3P22223 DECR2-202ENST00000424398 1012 ntTSL 5 BASIC17.49■□□□□ 0.39
CDH3P22223 AC093585.1-201ENST00000425183 428 ntTSL 2 BASIC17.49■□□□□ 0.39
CDH3P22223 DRAXINP1-201ENST00000437611 948 ntBASIC17.49■□□□□ 0.39
CDH3P22223 PCAT7-201ENST00000452148 1164 ntTSL 2 BASIC17.49■□□□□ 0.39
CDH3P22223 TOB2P1-201ENST00000469761 992 ntBASIC17.49■□□□□ 0.39
CDH3P22223 TNFSF13-208ENST00000483039 959 ntTSL 2 BASIC17.49■□□□□ 0.39
CDH3P22223 AC113404.2-201ENST00000507884 177 ntBASIC17.49■□□□□ 0.39
CDH3P22223 TFF3-204ENST00000518498 1109 ntAPPRIS P2 TSL 1 (best) BASIC17.49■□□□□ 0.39
CDH3P22223 AP000867.3-201ENST00000524675 377 ntBASIC17.49■□□□□ 0.39
CDH3P22223 TOLLIP-AS1-201ENST00000530897 939 ntBASIC17.49■□□□□ 0.39
CDH3P22223 TPSP2-201ENST00000561760 610 ntBASIC17.49■□□□□ 0.39
CDH3P22223 BRICD5-203ENST00000566018 555 ntTSL 2 BASIC17.49■□□□□ 0.39
CDH3P22223 AL592071.1-201ENST00000611956 408 ntBASIC17.49■□□□□ 0.39
CDH3P22223 POLI-207ENST00000579434 2705 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
CDH3P22223 PSTPIP1-203ENST00000558012 1896 ntAPPRIS P2 TSL 1 (best) BASIC17.49■□□□□ 0.39
CDH3P22223 AC027097.1-202ENST00000592201 1954 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
CDH3P22223 RAVER1-207ENST00000615032 1952 ntAPPRIS ALT2 TSL 5 BASIC17.49■□□□□ 0.39
CDH3P22223 CDK2AP2-201ENST00000301488 1378 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CDH3P22223 DTNBP1-203ENST00000355917 1359 ntTSL 5 BASIC17.49■□□□□ 0.39
CDH3P22223 MMP17-206ENST00000535291 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
CDH3P22223 TTLL8-201ENST00000266182 2505 ntAPPRIS ALT2 TSL 5 BASIC17.49■□□□□ 0.39
CDH3P22223 RNF139-201ENST00000303545 2637 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CDH3P22223 SLC38A10-201ENST00000288439 2708 ntAPPRIS P3 TSL 1 (best) BASIC17.49■□□□□ 0.39
CDH3P22223 SMIM24-201ENST00000215531 1329 ntAPPRIS P2 TSL 1 (best) BASIC17.48■□□□□ 0.39
CDH3P22223 LINC00960-201ENST00000463183 1333 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
CDH3P22223 HNRNPM-201ENST00000325495 2494 ntAPPRIS P4 TSL 1 (best) BASIC17.48■□□□□ 0.39
CDH3P22223 AL096870.2-201ENST00000565988 2108 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
CDH3P22223 NLGN2-201ENST00000302926 4642 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CDH3P22223 JMJD7-201ENST00000397299 1416 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CDH3P22223 RAVER2-202ENST00000371072 4362 ntAPPRIS P2 TSL 1 (best) BASIC17.48■□□□□ 0.39
CDH3P22223 ARFGAP1-201ENST00000353546 2776 ntAPPRIS P4 TSL 1 (best) BASIC17.48■□□□□ 0.39
CDH3P22223 STARD10-218ENST00000543304 1513 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CDH3P22223 PDXK-219ENST00000621478 1967 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
CDH3P22223 GJA3-201ENST00000241125 5211 ntAPPRIS P1 TSL 3 BASIC17.48■□□□□ 0.39
CDH3P22223 USP7-201ENST00000344836 5412 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CDH3P22223 FDXR-203ENST00000420580 1705 ntTSL 2 BASIC17.48■□□□□ 0.39
CDH3P22223 DNM1-211ENST00000627061 2724 ntTSL 5 BASIC17.48■□□□□ 0.39
CDH3P22223 S100A11-201ENST00000271638 594 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CDH3P22223 SUSD4-203ENST00000344029 1056 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
CDH3P22223 S100A14-201ENST00000344616 1058 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CDH3P22223 RASGRP2-208ENST00000394428 444 ntTSL 2 BASIC17.48■□□□□ 0.39
CDH3P22223 DDT-202ENST00000398344 713 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CDH3P22223 KRTAP5-11-201ENST00000398530 1021 ntAPPRIS P2 BASIC17.48■□□□□ 0.39
CDH3P22223 DDT-203ENST00000403754 569 ntTSL 3 BASIC17.48■□□□□ 0.39
CDH3P22223 DDT-206ENST00000430101 573 ntTSL 2 BASIC17.48■□□□□ 0.39
CDH3P22223 ENO1-AS1-201ENST00000442636 456 ntTSL 2 BASIC17.48■□□□□ 0.39
CDH3P22223 MIR3936HG-202ENST00000457998 733 ntTSL 2 BASIC17.48■□□□□ 0.39
CDH3P22223 NDUFB9-202ENST00000517367 636 ntTSL 3 BASIC17.48■□□□□ 0.39
CDH3P22223 CIB2-208ENST00000560618 804 ntTSL 2 BASIC17.48■□□□□ 0.39
CDH3P22223 YPEL3-204ENST00000563788 730 ntAPPRIS P1 TSL 3 BASIC17.48■□□□□ 0.39
CDH3P22223 PRELID1P1-202ENST00000567272 903 ntBASIC17.48■□□□□ 0.39
CDH3P22223 AL449423.1-201ENST00000578935 435 ntTSL 3 BASIC17.48■□□□□ 0.39
CDH3P22223 GNAS-AS1-203ENST00000598163 548 ntTSL 4 BASIC17.48■□□□□ 0.39
CDH3P22223 KISS1R-203ENST00000606939 964 ntTSL 5 BASIC17.48■□□□□ 0.39
CDH3P22223 AC008567.3-202ENST00000619671 859 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
CDH3P22223 DHRS4L2-211ENST00000621761 1049 ntTSL 5 BASIC17.48■□□□□ 0.39
CDH3P22223 MGLL-204ENST00000434178 4941 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CDH3P22223 GTF2IRD2-207ENST00000625377 1910 ntTSL 5 BASIC17.48■□□□□ 0.39
CDH3P22223 HCN1-201ENST00000303230 9885 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CDH3P22223 FMR1-206ENST00000370477 3437 ntTSL 5 BASIC17.48■□□□□ 0.39
CDH3P22223 CRYL1-202ENST00000382812 1581 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
CDH3P22223 GMCL1P1-201ENST00000463439 1581 ntBASIC17.48■□□□□ 0.39
CDH3P22223 IRAK3-202ENST00000457197 1853 ntTSL 2 BASIC17.48■□□□□ 0.39
CDH3P22223 EHMT1-204ENST00000462484 2707 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
CDH3P22223 ZNF281-201ENST00000294740 4891 ntAPPRIS P3 TSL 1 (best) BASIC17.47■□□□□ 0.39
CDH3P22223 CACNA1A-225ENST00000636389 8137 ntAPPRIS ALT2 TSL 5 BASIC17.47■□□□□ 0.39
CDH3P22223 TMEM128-201ENST00000254742 1737 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
CDH3P22223 JKAMP-201ENST00000261247 1726 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
CDH3P22223 NUDT9-201ENST00000302174 1701 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
CDH3P22223 AFG3L1P-203ENST00000418696 2965 ntTSL 2 BASIC17.47■□□□□ 0.39
CDH3P22223 KCNN4-209ENST00000615047 2029 ntTSL 5 BASIC17.47■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 49.5 ms