Protein–RNA interactions for Protein: O95476

CTDNEP1, CTD nuclear envelope phosphatase 1, humanhuman

Predictions only

Length 244 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTDNEP1O95476 RPL8-202ENST00000394920 965 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CTDNEP1O95476 GGT1-208ENST00000404920 657 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
CTDNEP1O95476 AL603832.1-201ENST00000421943 449 ntTSL 5 BASIC20.65■□□□□ 0.9
CTDNEP1O95476 GGTLC2-203ENST00000480559 657 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
CTDNEP1O95476 AC091607.1-201ENST00000490318 1060 ntBASIC20.65■□□□□ 0.9
CTDNEP1O95476 AC004771.4-201ENST00000576752 474 ntTSL 5 BASIC20.65■□□□□ 0.9
CTDNEP1O95476 AC005336.2-201ENST00000593183 939 ntBASIC20.65■□□□□ 0.9
CTDNEP1O95476 AL592071.1-201ENST00000611956 408 ntBASIC20.65■□□□□ 0.9
CTDNEP1O95476 KCNE1B-204ENST00000623803 811 ntAPPRIS P2 TSL 1 (best) BASIC20.65■□□□□ 0.9
CTDNEP1O95476 MIB2-219ENST00000505820 3305 ntAPPRIS P3 TSL 1 (best) BASIC20.65■□□□□ 0.9
CTDNEP1O95476 NRXN2-201ENST00000265459 6621 ntAPPRIS P3 TSL 5 BASIC20.65■□□□□ 0.9
CTDNEP1O95476 RBAK-202ENST00000396912 6551 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CTDNEP1O95476 TPR-209ENST00000613151 2478 ntTSL 5 BASIC20.65■□□□□ 0.9
CTDNEP1O95476 CCT7-215ENST00000539919 2031 ntTSL 2 BASIC20.65■□□□□ 0.9
CTDNEP1O95476 NEIL1-221ENST00000569035 1797 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
CTDNEP1O95476 LPAR3-201ENST00000370611 1720 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
CTDNEP1O95476 SLC35G6-201ENST00000412468 1697 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
CTDNEP1O95476 TRMT44-205ENST00000513449 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.9
CTDNEP1O95476 KDM8-202ENST00000441782 1612 ntTSL 2 BASIC20.64■□□□□ 0.9
CTDNEP1O95476 FGFR4-207ENST00000502906 2638 ntAPPRIS P4 TSL 1 (best) BASIC20.64■□□□□ 0.9
CTDNEP1O95476 GCSH-209ENST00000639689 2412 ntTSL 5 BASIC20.64■□□□□ 0.89
CTDNEP1O95476 STX2-201ENST00000261653 3331 ntAPPRIS ALT1 TSL 1 (best) BASIC20.64■□□□□ 0.89
CTDNEP1O95476 DTNBP1-203ENST00000355917 1359 ntTSL 5 BASIC20.64■□□□□ 0.89
CTDNEP1O95476 CCDC74A-206ENST00000467992 1347 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.89
CTDNEP1O95476 TFAP2E-201ENST00000373235 2189 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
CTDNEP1O95476 SSC5D-202ENST00000587166 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.89
CTDNEP1O95476 BCL2L10-201ENST00000260442 1249 ntAPPRIS P3 TSL 1 (best) BASIC20.64■□□□□ 0.89
CTDNEP1O95476 GPR32-201ENST00000270590 1269 ntAPPRIS P1 BASIC20.64■□□□□ 0.89
CTDNEP1O95476 AGTRAP-201ENST00000314340 1107 ntAPPRIS P3 TSL 1 (best) BASIC20.64■□□□□ 0.89
CTDNEP1O95476 AURKAIP1-202ENST00000338338 1047 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
CTDNEP1O95476 GPX4-201ENST00000354171 919 ntAPPRIS P2 TSL 1 (best) BASIC20.64■□□□□ 0.89
CTDNEP1O95476 AANAT-202ENST00000392492 1005 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
CTDNEP1O95476 SCO2-202ENST00000395693 992 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
CTDNEP1O95476 AC005104.2-201ENST00000427818 678 ntBASIC20.64■□□□□ 0.89
CTDNEP1O95476 ZNF436-AS1-203ENST00000454117 997 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
CTDNEP1O95476 LCN10-205ENST00000497771 723 ntAPPRIS P2 TSL 1 (best) BASIC20.64■□□□□ 0.89
CTDNEP1O95476 AC079848.1-202ENST00000507924 444 ntTSL 3 BASIC20.64■□□□□ 0.89
CTDNEP1O95476 GOLGA2P7-203ENST00000557881 896 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
CTDNEP1O95476 AC005944.1-201ENST00000592758 564 ntTSL 3 BASIC20.64■□□□□ 0.89
CTDNEP1O95476 LINC01714-202ENST00000635451 896 ntTSL 5 BASIC20.64■□□□□ 0.89
CTDNEP1O95476 RIMBP3-201ENST00000619918 6105 ntAPPRIS P1 BASIC20.64■□□□□ 0.89
CTDNEP1O95476 EIF4E1B-201ENST00000318682 1974 ntAPPRIS P1 TSL 5 BASIC20.64■□□□□ 0.89
CTDNEP1O95476 SELENOF-201ENST00000331835 1781 ntAPPRIS P2 TSL 1 (best) BASIC20.64■□□□□ 0.89
CTDNEP1O95476 PGRMC1-202ENST00000535419 1762 ntTSL 2 BASIC20.64■□□□□ 0.89
CTDNEP1O95476 CNNM1-201ENST00000356713 5959 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
CTDNEP1O95476 TOM1L2-207ENST00000535933 1748 ntTSL 2 BASIC20.64■□□□□ 0.89
CTDNEP1O95476 NFKBID-210ENST00000606253 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.89
CTDNEP1O95476 ADM-208ENST00000534464 1640 ntTSL 2 BASIC20.64■□□□□ 0.89
CTDNEP1O95476 P2RY6-209ENST00000540342 1611 ntAPPRIS P1 TSL 2 BASIC20.64■□□□□ 0.89
CTDNEP1O95476 PML-220ENST00000569477 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.89
CTDNEP1O95476 WDTC1-201ENST00000319394 4819 ntAPPRIS ALT1 TSL 1 (best) BASIC20.64■□□□□ 0.89
CTDNEP1O95476 SNX2-213ENST00000514949 2119 ntTSL 2 BASIC20.63■□□□□ 0.89
CTDNEP1O95476 DTX3-204ENST00000548804 2067 ntAPPRIS P3 TSL 5 BASIC20.63■□□□□ 0.89
CTDNEP1O95476 CXorf67-201ENST00000342995 1929 ntAPPRIS P1 BASIC20.63■□□□□ 0.89
CTDNEP1O95476 GGNBP2-212ENST00000613102 2847 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
CTDNEP1O95476 KANSL1-218ENST00000638275 5352 ntTSL 5 BASIC20.63■□□□□ 0.89
CTDNEP1O95476 SULT2B1-201ENST00000201586 1295 ntAPPRIS P4 TSL 1 (best) BASIC20.63■□□□□ 0.89
CTDNEP1O95476 KLK12-201ENST00000250351 882 ntAPPRIS P4 TSL 5 BASIC20.63■□□□□ 0.89
CTDNEP1O95476 NUDT6-201ENST00000304430 1169 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
CTDNEP1O95476 KLK12-202ENST00000319590 1074 ntAPPRIS ALT2 TSL 5 BASIC20.63■□□□□ 0.89
CTDNEP1O95476 NMRK1-202ENST00000376808 1121 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
CTDNEP1O95476 UFSP1-201ENST00000388761 996 ntAPPRIS P1 BASIC20.63■□□□□ 0.89
CTDNEP1O95476 SELENOF-203ENST00000401030 727 ntTSL 2 BASIC20.63■□□□□ 0.89
CTDNEP1O95476 AC093901.1-201ENST00000414886 778 ntTSL 5 BASIC20.63■□□□□ 0.89
CTDNEP1O95476 MHENCR-202ENST00000449500 801 ntTSL 2 BASIC20.63■□□□□ 0.89
CTDNEP1O95476 ZNF655-218ENST00000454654 571 ntTSL 4 BASIC20.63■□□□□ 0.89
CTDNEP1O95476 AC008610.1-201ENST00000504573 393 ntTSL 2 BASIC20.63■□□□□ 0.89
CTDNEP1O95476 TFF3-204ENST00000518498 1109 ntAPPRIS P2 TSL 1 (best) BASIC20.63■□□□□ 0.89
CTDNEP1O95476 KRT8P26-201ENST00000534154 1276 ntBASIC20.63■□□□□ 0.89
CTDNEP1O95476 CD320-202ENST00000537716 1119 ntTSL 2 BASIC20.63■□□□□ 0.89
CTDNEP1O95476 AC116407.4-201ENST00000623319 1061 ntBASIC20.63■□□□□ 0.89
CTDNEP1O95476 AC124864.1-201ENST00000623408 392 ntBASIC20.63■□□□□ 0.89
CTDNEP1O95476 DNM1-202ENST00000372923 3244 ntAPPRIS P3 TSL 1 (best) BASIC20.63■□□□□ 0.89
CTDNEP1O95476 SLC27A2-202ENST00000380902 2181 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
CTDNEP1O95476 LRRC61-201ENST00000323078 1684 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
CTDNEP1O95476 RHOBTB2-201ENST00000251822 5451 ntAPPRIS P3 TSL 1 (best) BASIC20.63■□□□□ 0.89
CTDNEP1O95476 JMJD4-201ENST00000366758 2595 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
CTDNEP1O95476 GDF5-202ENST00000374372 2572 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
CTDNEP1O95476 FAM9B-202ENST00000362066 2047 ntTSL 2 BASIC20.63■□□□□ 0.89
CTDNEP1O95476 AL445238.1-203ENST00000606050 1525 ntTSL 2 BASIC20.63■□□□□ 0.89
CTDNEP1O95476 MAP3K6-207ENST00000493901 4309 ntAPPRIS P1 TSL 5 BASIC20.62■□□□□ 0.89
CTDNEP1O95476 AC012313.1-201ENST00000593393 3059 ntBASIC20.62■□□□□ 0.89
CTDNEP1O95476 ACY1-206ENST00000476351 1409 ntTSL 3 BASIC20.62■□□□□ 0.89
CTDNEP1O95476 P2RX6-201ENST00000401443 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
CTDNEP1O95476 ZNF618-203ENST00000374126 3018 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
CTDNEP1O95476 NFATC1-210ENST00000587635 2195 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
CTDNEP1O95476 GLYCTK-201ENST00000305690 1371 ntTSL 5 BASIC20.62■□□□□ 0.89
CTDNEP1O95476 AC016734.2-201ENST00000624325 1377 ntBASIC20.62■□□□□ 0.89
CTDNEP1O95476 BCAR1-201ENST00000162330 3221 ntAPPRIS P3 TSL 1 (best) BASIC20.62■□□□□ 0.89
CTDNEP1O95476 AMACR-205ENST00000426255 1316 ntTSL 2 BASIC20.62■□□□□ 0.89
CTDNEP1O95476 AC097374.2-201ENST00000618617 1306 ntBASIC20.62■□□□□ 0.89
CTDNEP1O95476 BFSP1-201ENST00000377868 2063 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
CTDNEP1O95476 SDCBP-202ENST00000413219 2086 ntAPPRIS P3 TSL 2 BASIC20.62■□□□□ 0.89
CTDNEP1O95476 LTBP4-201ENST00000204005 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
CTDNEP1O95476 MRPS5-201ENST00000272418 1652 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
CTDNEP1O95476 ELANE-201ENST00000263621 920 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
CTDNEP1O95476 BOC-211ENST00000484034 1286 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
CTDNEP1O95476 AC073111.4-202ENST00000486297 585 ntTSL 4 BASIC20.62■□□□□ 0.89
CTDNEP1O95476 ANAPC11-217ENST00000579978 575 ntAPPRIS P1 TSL 2 BASIC20.62■□□□□ 0.89
CTDNEP1O95476 LARP4-210ENST00000522085 1577 ntTSL 2 BASIC20.62■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 29.3 ms