Protein–RNA interactions for Protein: O95343

SIX3, Homeobox protein SIX3, humanhuman

Predicted RBP Predictions only

Length 332 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX3O95343 NLRP6-203ENST00000534750 2936 ntAPPRIS ALT2 TSL 2 BASIC17.46■□□□□ 0.39
SIX3O95343 RAB40C-205ENST00000539661 2609 ntAPPRIS P1 TSL 3 BASIC17.46■□□□□ 0.39
SIX3O95343 MAPK11-201ENST00000330651 2431 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
SIX3O95343 GXYLT2-201ENST00000389617 3260 ntAPPRIS P1 TSL 5 BASIC17.46■□□□□ 0.39
SIX3O95343 VSIG10L2-202ENST00000638636 2304 ntAPPRIS P1 TSL 5 BASIC17.46■□□□□ 0.39
SIX3O95343 KRT8P47-201ENST00000604727 1398 ntBASIC17.46■□□□□ 0.39
SIX3O95343 PEX11G-201ENST00000221480 1062 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
SIX3O95343 HES7-201ENST00000317814 678 ntAPPRIS P3 TSL 1 (best) BASIC17.46■□□□□ 0.39
SIX3O95343 SUSD4-203ENST00000344029 1056 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
SIX3O95343 ANKRD20A18P-201ENST00000359341 492 ntBASIC17.46■□□□□ 0.39
SIX3O95343 FAM19A3-201ENST00000361886 1056 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
SIX3O95343 TSPO2-202ENST00000373161 958 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
SIX3O95343 SQSTM1-202ENST00000389805 2986 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
SIX3O95343 TSPO2-203ENST00000470917 699 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
SIX3O95343 COX11P1-201ENST00000489116 835 ntBASIC17.46■□□□□ 0.39
SIX3O95343 CALM3-208ENST00000596362 1203 ntAPPRIS P1 TSL 2 BASIC17.46■□□□□ 0.39
SIX3O95343 IFNL4-202ENST00000616270 1132 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
SIX3O95343 AC133561.5-201ENST00000635547 218 ntBASIC17.46■□□□□ 0.39
SIX3O95343 ARF1-214ENST00000541182 2006 ntAPPRIS P1 TSL 2 BASIC17.46■□□□□ 0.39
SIX3O95343 ARHGEF18-201ENST00000319670 5212 ntAPPRIS P3 TSL 1 (best) BASIC17.46■□□□□ 0.39
SIX3O95343 NADSYN1-201ENST00000319023 2773 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
SIX3O95343 ASIC2-201ENST00000225823 3443 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
SIX3O95343 ARID1B-203ENST00000350026 7962 ntAPPRIS P3 TSL 1 (best) BASIC17.46■□□□□ 0.39
SIX3O95343 MTMR14-203ENST00000353332 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
SIX3O95343 C6orf203-202ENST00000405204 1420 ntAPPRIS P1 TSL 2 BASIC17.46■□□□□ 0.39
SIX3O95343 DUOXA1-201ENST00000267803 1996 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
SIX3O95343 NKIRAS1-207ENST00000437230 1898 ntAPPRIS ALT1 TSL 5 BASIC17.46■□□□□ 0.38
SIX3O95343 IGSF8-201ENST00000314485 2343 ntAPPRIS P2 TSL 1 (best) BASIC17.46■□□□□ 0.38
SIX3O95343 PTP4A3-201ENST00000329397 2785 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
SIX3O95343 SNX2-213ENST00000514949 2119 ntTSL 2 BASIC17.45■□□□□ 0.38
SIX3O95343 WIPI2-201ENST00000288828 4476 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
SIX3O95343 GDF5-202ENST00000374372 2572 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
SIX3O95343 AC026954.2-202ENST00000575474 2571 ntAPPRIS P5 TSL 5 BASIC17.45■□□□□ 0.38
SIX3O95343 RNF187-201ENST00000305943 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
SIX3O95343 SNX27-203ENST00000368843 7197 ntAPPRIS P3 TSL 1 (best) BASIC17.45■□□□□ 0.38
SIX3O95343 LCORL-201ENST00000326877 5604 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
SIX3O95343 A4GALT-202ENST00000381278 1935 ntAPPRIS P1 TSL 5 BASIC17.45■□□□□ 0.38
SIX3O95343 REXO1L11P-201ENST00000620964 1927 ntBASIC17.45■□□□□ 0.38
SIX3O95343 FICD-204ENST00000552695 3347 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
SIX3O95343 NSMF-204ENST00000371473 3556 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
SIX3O95343 RGS14-201ENST00000408923 2415 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
SIX3O95343 EVI5L-202ENST00000538904 2418 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
SIX3O95343 SCT-201ENST00000176195 366 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
SIX3O95343 GUCA2B-201ENST00000372581 597 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
SIX3O95343 ZMYM5-203ENST00000382907 1092 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
SIX3O95343 UBE2J2-205ENST00000400930 1021 ntTSL 5 BASIC17.45■□□□□ 0.38
SIX3O95343 ELF3-AS1-202ENST00000419190 788 ntTSL 2 BASIC17.45■□□□□ 0.38
SIX3O95343 LEF1-AS1-201ENST00000436413 1045 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
SIX3O95343 PTX4-202ENST00000440447 1117 ntTSL 5 BASIC17.45■□□□□ 0.38
SIX3O95343 VASH1-204ENST00000554743 1096 ntTSL 3 BASIC17.45■□□□□ 0.38
SIX3O95343 C17orf62-230ENST00000583617 866 ntTSL 5 BASIC17.45■□□□□ 0.38
SIX3O95343 TEN1-204ENST00000588202 862 ntTSL 3 BASIC17.45■□□□□ 0.38
SIX3O95343 CD24-206ENST00000620405 586 ntAPPRIS ALT2 TSL 2 BASIC17.45■□□□□ 0.38
SIX3O95343 AC011558.1-201ENST00000623459 338 ntBASIC17.45■□□□□ 0.38
SIX3O95343 PAX4-204ENST00000463946 1613 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
SIX3O95343 ZIC1-201ENST00000282928 5241 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
SIX3O95343 UQCRC1-201ENST00000203407 1985 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
SIX3O95343 AP003717.1-202ENST00000537019 1412 ntTSL 5 BASIC17.45■□□□□ 0.38
SIX3O95343 PLEKHG6-203ENST00000396988 2963 ntAPPRIS P1 TSL 2 BASIC17.45■□□□□ 0.38
SIX3O95343 SLC29A2-206ENST00000546034 2509 ntAPPRIS P1 TSL 5 BASIC17.45■□□□□ 0.38
SIX3O95343 KAZN-203ENST00000376030 6030 ntAPPRIS P1 TSL 5 BASIC17.45■□□□□ 0.38
SIX3O95343 CROCCP2-202ENST00000412962 2773 ntBASIC17.45■□□□□ 0.38
SIX3O95343 SEMA3B-204ENST00000433753 2755 ntAPPRIS ALT1 TSL 1 (best) BASIC17.45■□□□□ 0.38
SIX3O95343 NFATC1-210ENST00000587635 2195 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
SIX3O95343 MEPCE-201ENST00000310512 3030 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
SIX3O95343 TNIP1-208ENST00000520931 2680 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
SIX3O95343 MARK2-209ENST00000509502 2862 ntAPPRIS ALT2 TSL 2 BASIC17.44■□□□□ 0.38
SIX3O95343 CENPT-215ENST00000564817 1638 ntAPPRIS ALT2 TSL 5 BASIC17.44■□□□□ 0.38
SIX3O95343 DOC2A-209ENST00000564979 1630 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
SIX3O95343 BNIP2-213ENST00000612191 2515 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
SIX3O95343 CYP11A1-202ENST00000358632 2001 ntTSL 2 BASIC17.44■□□□□ 0.38
SIX3O95343 SLC1A5-205ENST00000594991 2031 ntTSL 2 BASIC17.44■□□□□ 0.38
SIX3O95343 NEIL1-221ENST00000569035 1797 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
SIX3O95343 TMEM82-201ENST00000375782 1520 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
SIX3O95343 CERCAM-201ENST00000372838 2685 ntAPPRIS P3 TSL 1 (best) BASIC17.44■□□□□ 0.38
SIX3O95343 CREB3L1-206ENST00000621158 2687 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
SIX3O95343 TSPY8-203ENST00000383005 435 ntTSL 5 BASIC17.44■□□□□ 0.38
SIX3O95343 KRT18P65-201ENST00000439811 1286 ntBASIC17.44■□□□□ 0.38
SIX3O95343 AC025259.3-201ENST00000564531 542 ntTSL 3 BASIC17.44■□□□□ 0.38
SIX3O95343 PAQR4-204ENST00000574988 869 ntTSL 2 BASIC17.44■□□□□ 0.38
SIX3O95343 AC139887.4-201ENST00000607877 719 ntBASIC17.44■□□□□ 0.38
SIX3O95343 AC012306.2-201ENST00000609350 630 ntBASIC17.44■□□□□ 0.38
SIX3O95343 AC004263.2-201ENST00000617183 678 ntBASIC17.44■□□□□ 0.38
SIX3O95343 AC092902.2-222ENST00000626312 568 ntTSL 5 BASIC17.44■□□□□ 0.38
SIX3O95343 RASA2-202ENST00000452898 2562 ntAPPRIS ALT2 TSL 5 BASIC17.44■□□□□ 0.38
SIX3O95343 SEPT9-236ENST00000591088 1691 ntAPPRIS ALT2 TSL 2 BASIC17.44■□□□□ 0.38
SIX3O95343 MCMBP-201ENST00000360003 4169 ntAPPRIS P3 TSL 2 BASIC17.44■□□□□ 0.38
SIX3O95343 EIF4E1B-201ENST00000318682 1974 ntAPPRIS P1 TSL 5 BASIC17.44■□□□□ 0.38
SIX3O95343 TYMS-201ENST00000323224 1327 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
SIX3O95343 EIF5A-204ENST00000416016 1336 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
SIX3O95343 SRRM2-AS1-203ENST00000571305 1344 ntTSL 2 BASIC17.44■□□□□ 0.38
SIX3O95343 RDH8-203ENST00000591589 1715 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
SIX3O95343 FIGNL2-202ENST00000618634 4812 ntAPPRIS P1 TSL 5 BASIC17.44■□□□□ 0.38
SIX3O95343 LGALS8-AS1-201ENST00000487567 1457 ntBASIC17.44■□□□□ 0.38
SIX3O95343 KRT89P-201ENST00000620027 1478 ntBASIC17.44■□□□□ 0.38
SIX3O95343 DYRK1B-203ENST00000430012 2007 ntAPPRIS ALT1 TSL 5 BASIC17.43■□□□□ 0.38
SIX3O95343 AL023806.1-201ENST00000603994 1649 ntBASIC17.43■□□□□ 0.38
SIX3O95343 ZNF710-201ENST00000268154 4617 ntAPPRIS P1 TSL 2 BASIC17.43■□□□□ 0.38
SIX3O95343 GAL3ST1-201ENST00000338911 1782 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
SIX3O95343 SLC39A1-211ENST00000621013 2322 ntAPPRIS P1 TSL 2 BASIC17.43■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 27.7 ms