Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 TMEM220-AS1-201ENST00000579114 575 ntTSL 4 BASIC17.41■□□□□ 0.38
CCDC28BQ9BUN5 CIRBP-217ENST00000588230 1013 ntTSL 5 BASIC17.41■□□□□ 0.38
CCDC28BQ9BUN5 AC008763.3-201ENST00000597959 777 ntAPPRIS P1 TSL 4 BASIC17.41■□□□□ 0.38
CCDC28BQ9BUN5 LINC01451-201ENST00000623792 534 ntBASIC17.41■□□□□ 0.38
CCDC28BQ9BUN5 AC004706.3-201ENST00000634558 1009 ntTSL 5 BASIC17.41■□□□□ 0.38
CCDC28BQ9BUN5 ASB10-201ENST00000275838 1820 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
CCDC28BQ9BUN5 ECE2-201ENST00000324557 1823 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
CCDC28BQ9BUN5 UCKL1-202ENST00000358711 1845 ntTSL 2 BASIC17.41■□□□□ 0.38
CCDC28BQ9BUN5 AL353608.3-201ENST00000603200 2211 ntTSL 5 BASIC17.41■□□□□ 0.38
CCDC28BQ9BUN5 CCDC62-201ENST00000253079 3546 ntAPPRIS P2 TSL 1 (best) BASIC17.41■□□□□ 0.38
CCDC28BQ9BUN5 KIF13B-206ENST00000524189 8745 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CCDC28BQ9BUN5 TBC1D10C-209ENST00000542590 1659 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CCDC28BQ9BUN5 STOX1-201ENST00000298596 3377 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CCDC28BQ9BUN5 SNX16-201ENST00000345957 1853 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CCDC28BQ9BUN5 SFTPB-202ENST00000409383 1867 ntAPPRIS P2 TSL 1 (best) BASIC17.41■□□□□ 0.38
CCDC28BQ9BUN5 CHST10-201ENST00000264249 2842 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CCDC28BQ9BUN5 FENDRR-206ENST00000599749 2843 ntTSL 3 BASIC17.41■□□□□ 0.38
CCDC28BQ9BUN5 ZNF470-201ENST00000330619 7151 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CCDC28BQ9BUN5 LRRN4-201ENST00000378858 2692 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CCDC28BQ9BUN5 CREB3L1-206ENST00000621158 2687 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CCDC28BQ9BUN5 PEX10-201ENST00000288774 2871 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
CCDC28BQ9BUN5 CKMT1A-202ENST00000413453 1911 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CCDC28BQ9BUN5 KDM5C-204ENST00000375401 6031 ntAPPRIS P3 TSL 1 (best) BASIC17.41■□□□□ 0.38
CCDC28BQ9BUN5 SPIDR-227ENST00000541342 3311 ntAPPRIS ALT2 TSL 2 BASIC17.41■□□□□ 0.38
CCDC28BQ9BUN5 FICD-204ENST00000552695 3347 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CCDC28BQ9BUN5 METTL5-207ENST00000410097 1370 ntTSL 2 BASIC17.4■□□□□ 0.38
CCDC28BQ9BUN5 FCER2-201ENST00000346664 1596 ntAPPRIS P2 TSL 1 (best) BASIC17.4■□□□□ 0.38
CCDC28BQ9BUN5 ETV7-204ENST00000373738 1570 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
CCDC28BQ9BUN5 FCER2-205ENST00000597921 1560 ntAPPRIS P2 TSL 1 (best) BASIC17.4■□□□□ 0.38
CCDC28BQ9BUN5 ETV7-207ENST00000620358 1599 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
CCDC28BQ9BUN5 TMEM216-203ENST00000515837 1958 ntAPPRIS P2 TSL 2 BASIC17.4■□□□□ 0.38
CCDC28BQ9BUN5 CHRNA5-201ENST00000299565 3623 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CCDC28BQ9BUN5 ARL15-201ENST00000502271 3248 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
CCDC28BQ9BUN5 NGFR-202ENST00000504201 1840 ntTSL 2 BASIC17.4■□□□□ 0.38
CCDC28BQ9BUN5 UNC5CL-202ENST00000373164 1620 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CCDC28BQ9BUN5 L1CAM-203ENST00000370055 4655 ntTSL 5 BASIC17.4■□□□□ 0.38
CCDC28BQ9BUN5 SYT8-202ENST00000381968 1424 ntAPPRIS P2 TSL 5 BASIC17.4■□□□□ 0.38
CCDC28BQ9BUN5 LAT2-204ENST00000398475 2453 ntAPPRIS P2 TSL 1 (best) BASIC17.4■□□□□ 0.38
CCDC28BQ9BUN5 GBA2-201ENST00000378088 1672 ntTSL 2 BASIC17.4■□□□□ 0.38
CCDC28BQ9BUN5 FBF1-205ENST00000586717 4825 ntAPPRIS ALT2 TSL 5 BASIC17.4■□□□□ 0.38
CCDC28BQ9BUN5 CHAT-205ENST00000395562 2528 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
CCDC28BQ9BUN5 RASSF7-205ENST00000454668 1450 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
CCDC28BQ9BUN5 TPPP3-201ENST00000290942 1116 ntAPPRIS P1 TSL 2 BASIC17.4■□□□□ 0.38
CCDC28BQ9BUN5 GUK1-209ENST00000366730 937 ntAPPRIS P3 TSL 3 BASIC17.4■□□□□ 0.38
CCDC28BQ9BUN5 TPPP3-202ENST00000393957 1058 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CCDC28BQ9BUN5 ROMO1-205ENST00000397416 288 ntAPPRIS P1 TSL 3 BASIC17.4■□□□□ 0.38
CCDC28BQ9BUN5 AC128676.1-201ENST00000454392 318 ntBASIC17.4■□□□□ 0.38
CCDC28BQ9BUN5 AC013402.1-201ENST00000456999 561 ntTSL 4 BASIC17.4■□□□□ 0.38
CCDC28BQ9BUN5 NDUFS3-212ENST00000534208 583 ntTSL 4 BASIC17.4■□□□□ 0.38
CCDC28BQ9BUN5 KRT18P6-201ENST00000555540 1265 ntBASIC17.4■□□□□ 0.38
CCDC28BQ9BUN5 GCHFR-205ENST00000559932 695 ntTSL 2 BASIC17.4■□□□□ 0.38
CCDC28BQ9BUN5 AC025259.3-201ENST00000564531 542 ntTSL 3 BASIC17.4■□□□□ 0.38
CCDC28BQ9BUN5 ATP5D-207ENST00000591660 637 ntAPPRIS P1 TSL 3 BASIC17.4■□□□□ 0.38
CCDC28BQ9BUN5 CD177P1-201ENST00000606252 935 ntBASIC17.4■□□□□ 0.38
CCDC28BQ9BUN5 CR769767.2-201ENST00000622735 460 ntBASIC17.4■□□□□ 0.38
CCDC28BQ9BUN5 SLC35A2-213ENST00000635015 1008 ntTSL 2 BASIC17.4■□□□□ 0.38
CCDC28BQ9BUN5 BATF2-202ENST00000435842 1949 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
CCDC28BQ9BUN5 PRRT2-219ENST00000637565 1733 ntTSL 5 BASIC17.4■□□□□ 0.38
CCDC28BQ9BUN5 ZMYND11-208ENST00000397962 2150 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CCDC28BQ9BUN5 AGAP2-AS1-201ENST00000542466 1500 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
CCDC28BQ9BUN5 SPAG1-201ENST00000251809 3748 ntAPPRIS P1 TSL 5 BASIC17.4■□□□□ 0.38
CCDC28BQ9BUN5 HFE2-201ENST00000336751 2234 ntAPPRIS P1 TSL 2 BASIC17.4■□□□□ 0.38
CCDC28BQ9BUN5 MAP4K1-201ENST00000396857 2653 ntAPPRIS P1 TSL 5 BASIC17.4■□□□□ 0.38
CCDC28BQ9BUN5 ITGB2-AS1-202ENST00000441379 2282 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
CCDC28BQ9BUN5 SLC22A7-201ENST00000372574 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
CCDC28BQ9BUN5 EXT2-202ENST00000358681 2997 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
CCDC28BQ9BUN5 PLEKHG6-203ENST00000396988 2963 ntAPPRIS P1 TSL 2 BASIC17.4■□□□□ 0.38
CCDC28BQ9BUN5 WNT9B-201ENST00000290015 1376 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CCDC28BQ9BUN5 RNF103-201ENST00000237455 3477 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CCDC28BQ9BUN5 ACP5-201ENST00000218758 1630 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.38
CCDC28BQ9BUN5 LAT-203ENST00000395456 1616 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.38
CCDC28BQ9BUN5 CAMK4-210ENST00000512453 1640 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.38
CCDC28BQ9BUN5 NR2F1-201ENST00000327111 3732 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.38
CCDC28BQ9BUN5 ARHGEF5-202ENST00000471847 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.38
CCDC28BQ9BUN5 NFATC1-208ENST00000586434 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.38
CCDC28BQ9BUN5 PRMT6-201ENST00000370078 2616 ntAPPRIS P1 BASIC17.39■□□□□ 0.37
CCDC28BQ9BUN5 TMUB2-212ENST00000589785 1918 ntAPPRIS P3 TSL 2 BASIC17.39■□□□□ 0.37
CCDC28BQ9BUN5 GOLGA6L10-207ENST00000610657 1705 ntAPPRIS P2 TSL 2 BASIC17.39■□□□□ 0.37
CCDC28BQ9BUN5 TYRO3-201ENST00000263798 8207 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.37
CCDC28BQ9BUN5 SIPA1-209ENST00000534313 3521 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
CCDC28BQ9BUN5 HNRNPF-204ENST00000443950 2755 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
CCDC28BQ9BUN5 TLE2-204ENST00000455444 2253 ntTSL 5 BASIC17.39■□□□□ 0.37
CCDC28BQ9BUN5 ARF1-214ENST00000541182 2006 ntAPPRIS P1 TSL 2 BASIC17.39■□□□□ 0.37
CCDC28BQ9BUN5 GAMT-201ENST00000252288 1121 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
CCDC28BQ9BUN5 MRPL54-201ENST00000330133 626 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
CCDC28BQ9BUN5 IGHV3-73-201ENST00000390636 437 ntAPPRIS P1 BASIC17.39■□□□□ 0.37
CCDC28BQ9BUN5 AC091133.2-201ENST00000505903 428 ntTSL 3 BASIC17.39■□□□□ 0.37
CCDC28BQ9BUN5 AC098864.1-204ENST00000513752 805 ntTSL 4 BASIC17.39■□□□□ 0.37
CCDC28BQ9BUN5 PTTG1-205ENST00000520452 895 ntAPPRIS P1 TSL 3 BASIC17.39■□□□□ 0.37
CCDC28BQ9BUN5 MVB12A-204ENST00000528515 686 ntTSL 5 BASIC17.39■□□□□ 0.37
CCDC28BQ9BUN5 TMEM72-203ENST00000544540 1018 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
CCDC28BQ9BUN5 EMC9-206ENST00000560403 872 ntTSL 2 BASIC17.39■□□□□ 0.37
CCDC28BQ9BUN5 AC004448.5-201ENST00000579897 567 ntTSL 5 BASIC17.39■□□□□ 0.37
CCDC28BQ9BUN5 GOLGA2P10-205ENST00000618267 983 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
CCDC28BQ9BUN5 MFSD11-202ENST00000355954 2832 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
CCDC28BQ9BUN5 MRTO4-201ENST00000330263 2315 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
CCDC28BQ9BUN5 ARHGAP9-204ENST00000430041 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
CCDC28BQ9BUN5 MEI1-215ENST00000540833 2326 ntTSL 5 BASIC17.39■□□□□ 0.37
CCDC28BQ9BUN5 PCDHA5-202ENST00000529859 5218 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
CCDC28BQ9BUN5 GPAT2P1-202ENST00000471661 1569 ntTSL 2 BASIC17.39■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 53.5 ms