Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 AP003071.4-201ENST00000562276 1284 ntBASIC15.63■□□□□ 0.09
NKX3-1Q99801 TNFRSF12A-206ENST00000575124 1133 ntTSL 2 BASIC15.63■□□□□ 0.09
NKX3-1Q99801 C16orf74-202ENST00000602583 1237 ntAPPRIS ALT2 TSL 1 (best) BASIC15.63■□□□□ 0.09
NKX3-1Q99801 KANK3-205ENST00000610351 1191 ntTSL 5 BASIC15.63■□□□□ 0.09
NKX3-1Q99801 AC106017.2-202ENST00000628484 536 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
NKX3-1Q99801 ANKMY1-202ENST00000361678 2499 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
NKX3-1Q99801 ARFRP1-213ENST00000619493 2456 ntAPPRIS P1 TSL 3 BASIC15.63■□□□□ 0.09
NKX3-1Q99801 SGCB-201ENST00000381431 4431 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
NKX3-1Q99801 USP13-201ENST00000263966 8323 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
NKX3-1Q99801 SLC25A23-202ENST00000301454 3425 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
NKX3-1Q99801 MYH14-203ENST00000425460 6811 ntAPPRIS P3 TSL 5 BASIC15.63■□□□□ 0.09
NKX3-1Q99801 LINC00683-201ENST00000578803 2221 ntTSL 2 BASIC15.63■□□□□ 0.09
NKX3-1Q99801 SQLE-201ENST00000265896 2961 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
NKX3-1Q99801 ACSL4-201ENST00000340800 5333 ntAPPRIS P4 TSL 5 BASIC15.63■□□□□ 0.09
NKX3-1Q99801 ANAPC2-201ENST00000323927 2632 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
NKX3-1Q99801 MAPRE1-201ENST00000375571 2623 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
NKX3-1Q99801 AD000864.1-201ENST00000624076 2295 ntBASIC15.63■□□□□ 0.09
NKX3-1Q99801 DHCR7-201ENST00000355527 2666 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
NKX3-1Q99801 KIAA1586-203ENST00000545356 2883 ntTSL 2 BASIC15.62■□□□□ 0.09
NKX3-1Q99801 FBXO18-203ENST00000397269 3640 ntTSL 5 BASIC15.62■□□□□ 0.09
NKX3-1Q99801 SLC29A2-206ENST00000546034 2509 ntAPPRIS P1 TSL 5 BASIC15.62■□□□□ 0.09
NKX3-1Q99801 LZTS3-202ENST00000337576 4238 ntAPPRIS P1 TSL 5 BASIC15.62■□□□□ 0.09
NKX3-1Q99801 PACS2-202ENST00000430725 2944 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
NKX3-1Q99801 NRXN2-202ENST00000301894 3535 ntTSL 5 BASIC15.62■□□□□ 0.09
NKX3-1Q99801 ITGB7-202ENST00000422257 2791 ntAPPRIS P1 TSL 5 BASIC15.62■□□□□ 0.09
NKX3-1Q99801 SERPINB6-208ENST00000616722 2047 ntTSL 2 BASIC15.62■□□□□ 0.09
NKX3-1Q99801 RAP1B-203ENST00000378985 1017 ntTSL 2 BASIC15.62■□□□□ 0.09
NKX3-1Q99801 VSIG2-202ENST00000403470 1191 ntTSL 2 BASIC15.62■□□□□ 0.09
NKX3-1Q99801 AC012618.3-203ENST00000426044 917 ntTSL 2 BASIC15.62■□□□□ 0.09
NKX3-1Q99801 BX322234.1-201ENST00000444188 980 ntTSL 3 BASIC15.62■□□□□ 0.09
NKX3-1Q99801 STXBP1-203ENST00000476182 566 ntTSL 5 BASIC15.62■□□□□ 0.09
NKX3-1Q99801 PACRGL-207ENST00000502938 810 ntTSL 4 BASIC15.62■□□□□ 0.09
NKX3-1Q99801 RAP1B-221ENST00000540209 1264 ntTSL 2 BASIC15.62■□□□□ 0.09
NKX3-1Q99801 AL355075.4-201ENST00000554988 638 ntBASIC15.62■□□□□ 0.09
NKX3-1Q99801 AC008763.3-201ENST00000597959 777 ntAPPRIS P1 TSL 4 BASIC15.62■□□□□ 0.09
NKX3-1Q99801 OGFOD2-205ENST00000454694 1488 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
NKX3-1Q99801 AC004890.2-202ENST00000463462 1494 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
NKX3-1Q99801 ZDHHC8-202ENST00000334554 5046 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
NKX3-1Q99801 ITGB2-AS1-202ENST00000441379 2282 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
NKX3-1Q99801 PIP5K1A-207ENST00000441902 2297 ntTSL 2 BASIC15.62■□□□□ 0.09
NKX3-1Q99801 MAP7-209ENST00000618822 4497 ntAPPRIS ALT2 TSL 5 BASIC15.62■□□□□ 0.09
NKX3-1Q99801 PDZD8-201ENST00000334464 9699 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
NKX3-1Q99801 ITSN2-201ENST00000355123 6300 ntAPPRIS P4 TSL 1 (best) BASIC15.62■□□□□ 0.09
NKX3-1Q99801 AKIRIN1-202ENST00000432648 2741 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
NKX3-1Q99801 TTC8-202ENST00000345383 2329 ntTSL 5 BASIC15.62■□□□□ 0.09
NKX3-1Q99801 PRCC-201ENST00000271526 2105 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
NKX3-1Q99801 SNX2-213ENST00000514949 2119 ntTSL 2 BASIC15.62■□□□□ 0.09
NKX3-1Q99801 FAM50B-202ENST00000380274 1932 ntAPPRIS P1 BASIC15.62■□□□□ 0.09
NKX3-1Q99801 HASPIN-201ENST00000325418 2797 ntAPPRIS P1 BASIC15.62■□□□□ 0.09
NKX3-1Q99801 CROCCP2-202ENST00000412962 2773 ntBASIC15.62■□□□□ 0.09
NKX3-1Q99801 ZBTB10-202ENST00000426744 9878 ntAPPRIS ALT2 TSL 5 BASIC15.62■□□□□ 0.09
NKX3-1Q99801 RRAGD-202ENST00000369415 4900 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
NKX3-1Q99801 C11orf58-201ENST00000228136 2049 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
NKX3-1Q99801 LINC00595-204ENST00000434974 2692 ntTSL 2 BASIC15.61■□□□□ 0.09
NKX3-1Q99801 MYBPH-201ENST00000255416 1805 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
NKX3-1Q99801 ACBD3-201ENST00000366812 3573 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
NKX3-1Q99801 CCNC-207ENST00000518714 1426 ntTSL 5 BASIC15.61■□□□□ 0.09
NKX3-1Q99801 EXT2-202ENST00000358681 2997 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
NKX3-1Q99801 CDH23-205ENST00000398809 4533 ntTSL 5 BASIC15.61■□□□□ 0.09
NKX3-1Q99801 FAM184A-201ENST00000338891 4141 ntAPPRIS P4 TSL 1 (best) BASIC15.61■□□□□ 0.09
NKX3-1Q99801 C21orf59-201ENST00000290155 1692 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
NKX3-1Q99801 CFLAR-208ENST00000423241 2128 ntAPPRIS P3 TSL 1 (best) BASIC15.61■□□□□ 0.09
NKX3-1Q99801 AC132872.2-201ENST00000581303 2368 ntTSL 5 BASIC15.61■□□□□ 0.09
NKX3-1Q99801 APOA5-203ENST00000542499 1929 ntAPPRIS P1 TSL 5 BASIC15.61■□□□□ 0.09
NKX3-1Q99801 SPG7-201ENST00000268704 3076 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
NKX3-1Q99801 ZNF296-201ENST00000303809 1744 ntAPPRIS P2 TSL 1 (best) BASIC15.61■□□□□ 0.09
NKX3-1Q99801 EXD3-201ENST00000340951 2872 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
NKX3-1Q99801 AZU1-202ENST00000592205 1713 ntTSL 2 BASIC15.61■□□□□ 0.09
NKX3-1Q99801 OR10H2-201ENST00000305899 1041 ntAPPRIS P1 BASIC15.61■□□□□ 0.09
NKX3-1Q99801 MRPL54-201ENST00000330133 626 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
NKX3-1Q99801 KAZN-201ENST00000361144 3838 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
NKX3-1Q99801 HIST1H2APS4-201ENST00000362070 348 ntBASIC15.61■□□□□ 0.09
NKX3-1Q99801 UBB-203ENST00000395839 1012 ntAPPRIS P1 TSL 2 BASIC15.61■□□□□ 0.09
NKX3-1Q99801 HDAC11-203ENST00000402271 1018 ntTSL 3 BASIC15.61■□□□□ 0.09
NKX3-1Q99801 ECEL1P3-201ENST00000427961 737 ntBASIC15.61■□□□□ 0.09
NKX3-1Q99801 TSPY15P-201ENST00000457163 923 ntBASIC15.61■□□□□ 0.09
NKX3-1Q99801 TMUB1-205ENST00000482202 899 ntAPPRIS P1 TSL 3 BASIC15.61■□□□□ 0.09
NKX3-1Q99801 NUBP2-206ENST00000565134 815 ntTSL 5 BASIC15.61■□□□□ 0.09
NKX3-1Q99801 AC027796.4-201ENST00000575741 874 ntTSL 5 BASIC15.61■□□□□ 0.09
NKX3-1Q99801 DHRS11-210ENST00000611337 1341 ntTSL 5 BASIC15.61■□□□□ 0.09
NKX3-1Q99801 WDR37-206ENST00000620998 1303 ntTSL 5 BASIC15.61■□□□□ 0.09
NKX3-1Q99801 FAM120AOS-201ENST00000375412 2771 ntAPPRIS P3 TSL 1 (best) BASIC15.61■□□□□ 0.09
NKX3-1Q99801 PHF20L1-203ENST00000337920 2311 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
NKX3-1Q99801 TTC13-202ENST00000366662 3112 ntAPPRIS ALT2 TSL 1 (best) BASIC15.61■□□□□ 0.09
NKX3-1Q99801 SCRIB-203ENST00000377533 5108 ntAPPRIS ALT2 TSL 1 (best) BASIC15.61■□□□□ 0.09
NKX3-1Q99801 ASB1-201ENST00000264607 6994 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
NKX3-1Q99801 TNRC18P3-201ENST00000441896 2691 ntBASIC15.61■□□□□ 0.09
NKX3-1Q99801 PLEKHG4-205ENST00000450733 4480 ntAPPRIS ALT2 TSL 1 (best) BASIC15.6■□□□□ 0.09
NKX3-1Q99801 AP001094.4-201ENST00000579008 2176 ntBASIC15.6■□□□□ 0.09
NKX3-1Q99801 ARSA-204ENST00000395621 1918 ntAPPRIS P1 TSL 2 BASIC15.6■□□□□ 0.09
NKX3-1Q99801 INVS-203ENST00000374921 1654 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
NKX3-1Q99801 MIDN-201ENST00000300952 3790 ntAPPRIS P2 TSL 5 BASIC15.6■□□□□ 0.09
NKX3-1Q99801 BTBD1-201ENST00000261721 3297 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
NKX3-1Q99801 SRSF12-201ENST00000452027 3599 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
NKX3-1Q99801 AGO3-202ENST00000324350 1726 ntTSL 2 BASIC15.6■□□□□ 0.09
NKX3-1Q99801 RGS12-203ENST00000344733 5469 ntAPPRIS P4 TSL 1 (best) BASIC15.6■□□□□ 0.09
NKX3-1Q99801 ANKFY1-202ENST00000570535 6458 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
NKX3-1Q99801 UBALD1-205ENST00000590891 2641 ntBASIC15.6■□□□□ 0.09
NKX3-1Q99801 HOXA-AS3-205ENST00000524304 2063 ntTSL 2 BASIC15.6■□□□□ 0.09
NKX3-1Q99801 KRT18P55-202ENST00000578578 1546 ntBASIC15.6■□□□□ 0.09
Retrieved 100 of 98,524 protein–RNA pairs in 47.6 ms