Protein–RNA interactions for Protein: Q99742

NPAS1, Neuronal PAS domain-containing protein 1, humanhuman

Predictions only

Length 590 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS1Q99742 EIF3B-201ENST00000360876 3055 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
NPAS1Q99742 SLCO6A1-201ENST00000379807 2437 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
NPAS1Q99742 ZC3H12D-201ENST00000409806 5791 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
NPAS1Q99742 MARK1-202ENST00000366918 5169 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
NPAS1Q99742 MRPS5-201ENST00000272418 1652 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
NPAS1Q99742 SEPT11-201ENST00000264893 5593 ntAPPRIS P2 TSL 1 (best) BASIC16.3■□□□□ 0.2
NPAS1Q99742 EML2-203ENST00000536630 2791 ntAPPRIS ALT2 TSL 2 BASIC16.3■□□□□ 0.2
NPAS1Q99742 TMEM59L-201ENST00000262817 1613 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
NPAS1Q99742 GXYLT1-202ENST00000398675 7497 ntAPPRIS P4 TSL 1 (best) BASIC16.3■□□□□ 0.2
NPAS1Q99742 DLK2-203ENST00000372488 1590 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
NPAS1Q99742 ACP6-201ENST00000392988 1555 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
NPAS1Q99742 GPAT2P1-202ENST00000471661 1569 ntTSL 2 BASIC16.3■□□□□ 0.2
NPAS1Q99742 SDC2-202ENST00000518385 1583 ntTSL 5 BASIC16.3■□□□□ 0.2
NPAS1Q99742 CDH6-205ENST00000514738 2569 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
NPAS1Q99742 TMEM216-203ENST00000515837 1958 ntAPPRIS P2 TSL 2 BASIC16.29■□□□□ 0.2
NPAS1Q99742 KIAA1586-201ENST00000370733 2933 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
NPAS1Q99742 PRSS35-201ENST00000369700 2440 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
NPAS1Q99742 KANSL1-202ENST00000432791 5343 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
NPAS1Q99742 KLHDC3-201ENST00000244670 1903 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
NPAS1Q99742 NR4A2-204ENST00000409572 2878 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
NPAS1Q99742 TRIM8-201ENST00000302424 2831 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
NPAS1Q99742 CD14-201ENST00000302014 1886 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
NPAS1Q99742 ADRA1A-201ENST00000276393 2281 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
NPAS1Q99742 MARVELD3-202ENST00000299952 2214 ntAPPRIS ALT2 TSL 2 BASIC16.29■□□□□ 0.2
NPAS1Q99742 PRKRA-203ENST00000432031 1344 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
NPAS1Q99742 SRSF1-208ENST00000584773 1317 ntTSL 5 BASIC16.29■□□□□ 0.2
NPAS1Q99742 SEMA6B-201ENST00000586582 3986 ntAPPRIS P2 TSL 1 (best) BASIC16.29■□□□□ 0.2
NPAS1Q99742 TMPRSS9-205ENST00000613480 2568 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
NPAS1Q99742 MED30-201ENST00000297347 985 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
NPAS1Q99742 FAM86B2-202ENST00000309608 806 ntTSL 3 BASIC16.29■□□□□ 0.2
NPAS1Q99742 CARMIL2-201ENST00000334583 4687 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
NPAS1Q99742 CCDC7-203ENST00000362006 2133 ntAPPRIS P2 TSL 1 (best) BASIC16.29■□□□□ 0.2
NPAS1Q99742 CHCHD2P8-201ENST00000429873 447 ntBASIC16.29■□□□□ 0.2
NPAS1Q99742 KRT18P65-201ENST00000439811 1286 ntBASIC16.29■□□□□ 0.2
NPAS1Q99742 LINC01128-207ENST00000449005 874 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
NPAS1Q99742 MTG1-205ENST00000477902 1283 ntTSL 3 BASIC16.29■□□□□ 0.2
NPAS1Q99742 BOC-211ENST00000484034 1286 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
NPAS1Q99742 MPI-205ENST00000562606 1052 ntTSL 3 BASIC16.29■□□□□ 0.2
NPAS1Q99742 CHRNB1-207ENST00000575379 1095 ntTSL 2 BASIC16.29■□□□□ 0.2
NPAS1Q99742 AP002414.4-201ENST00000589764 1148 ntBASIC16.29■□□□□ 0.2
NPAS1Q99742 IGHV3-41-201ENST00000613121 348 ntBASIC16.29■□□□□ 0.2
NPAS1Q99742 GXYLT1P4-201ENST00000613576 1192 ntBASIC16.29■□□□□ 0.2
NPAS1Q99742 MCOLN1-201ENST00000264079 2082 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
NPAS1Q99742 FAM117B-201ENST00000392238 5763 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
NPAS1Q99742 GHDC-202ENST00000414034 2496 ntTSL 2 BASIC16.29■□□□□ 0.2
NPAS1Q99742 DUOXA1-201ENST00000267803 1996 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
NPAS1Q99742 IRF7-207ENST00000525445 1588 ntTSL 5 BASIC16.29■□□□□ 0.2
NPAS1Q99742 HSPB9-201ENST00000565659 1922 ntAPPRIS P1 BASIC16.29■□□□□ 0.2
NPAS1Q99742 SPRYD7-201ENST00000361840 3053 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
NPAS1Q99742 FAM110A-202ENST00000304189 1856 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
NPAS1Q99742 TMED3-201ENST00000299705 1475 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
NPAS1Q99742 SLC22A7-201ENST00000372574 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
NPAS1Q99742 BNIP2-213ENST00000612191 2515 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
NPAS1Q99742 CNTNAP3B-203ENST00000377561 5379 ntAPPRIS P2 TSL 1 (best) BASIC16.28■□□□□ 0.2
NPAS1Q99742 FYTTD1-205ENST00000424384 1758 ntTSL 2 BASIC16.28■□□□□ 0.2
NPAS1Q99742 NFATC1-206ENST00000542384 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
NPAS1Q99742 AGPAT2-205ENST00000538402 1357 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
NPAS1Q99742 KRT8P47-201ENST00000604727 1398 ntBASIC16.28■□□□□ 0.2
NPAS1Q99742 PRRT2-216ENST00000637403 2033 ntTSL 5 BASIC16.28■□□□□ 0.2
NPAS1Q99742 VHL-202ENST00000345392 2696 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
NPAS1Q99742 ZNF48-205ENST00000613509 3339 ntAPPRIS P1 TSL 2 BASIC16.28■□□□□ 0.2
NPAS1Q99742 AC067852.2-201ENST00000590513 2313 ntBASIC16.28■□□□□ 0.2
NPAS1Q99742 ALDH3A1-206ENST00000457500 1925 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
NPAS1Q99742 MFSD11-220ENST00000621483 2850 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
NPAS1Q99742 FIBP-202ENST00000357519 1248 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
NPAS1Q99742 ATP5J-203ENST00000400090 647 ntAPPRIS P1 TSL 2 BASIC16.28■□□□□ 0.2
NPAS1Q99742 LINC01315-202ENST00000424852 1142 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
NPAS1Q99742 AC234772.2-201ENST00000456532 375 ntTSL 3 BASIC16.28■□□□□ 0.2
NPAS1Q99742 AC010655.4-201ENST00000462662 707 ntTSL 4 BASIC16.28■□□□□ 0.2
NPAS1Q99742 SURF4-206ENST00000485435 1206 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
NPAS1Q99742 AC073111.4-202ENST00000486297 585 ntTSL 4 BASIC16.28■□□□□ 0.2
NPAS1Q99742 AP005901.3-202ENST00000581653 237 ntBASIC16.28■□□□□ 0.2
NPAS1Q99742 AC010463.1-201ENST00000596542 1207 ntAPPRIS P1 TSL 2 BASIC16.28■□□□□ 0.2
NPAS1Q99742 AC009154.2-201ENST00000621177 724 ntBASIC16.28■□□□□ 0.2
NPAS1Q99742 FOXE1-201ENST00000375123 3462 ntAPPRIS P1 BASIC16.28■□□□□ 0.2
NPAS1Q99742 LINC00937-205ENST00000538304 2157 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
NPAS1Q99742 ANKRD6-202ENST00000369408 5258 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
NPAS1Q99742 ZNF74-201ENST00000357502 2788 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
NPAS1Q99742 DMPK-204ENST00000447742 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
NPAS1Q99742 UBE3C-201ENST00000348165 5229 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
NPAS1Q99742 FLJ13224-201ENST00000313737 1514 ntBASIC16.28■□□□□ 0.2
NPAS1Q99742 FGFR1-203ENST00000341462 6054 ntTSL 5 BASIC16.28■□□□□ 0.2
NPAS1Q99742 THOP1-201ENST00000307741 4804 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
NPAS1Q99742 IGSF9-206ENST00000611023 2663 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
NPAS1Q99742 AC004832.3-202ENST00000439838 1470 ntAPPRIS P1 TSL 2 BASIC16.28■□□□□ 0.2
NPAS1Q99742 TJP3-205ENST00000587686 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
NPAS1Q99742 RBL2-201ENST00000262133 4906 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
NPAS1Q99742 TMC5-203ENST00000396229 4917 ntAPPRIS ALT2 TSL 5 BASIC16.28■□□□□ 0.2
NPAS1Q99742 AC009041.2-206ENST00000563863 1728 ntTSL 2 BASIC16.28■□□□□ 0.2
NPAS1Q99742 VGLL4-210ENST00000426568 1428 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
NPAS1Q99742 OGFOD2-211ENST00000538628 1696 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
NPAS1Q99742 TBC1D10C-209ENST00000542590 1659 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
NPAS1Q99742 VRK3-225ENST00000601912 1668 ntAPPRIS ALT2 TSL 5 BASIC16.27■□□□□ 0.2
NPAS1Q99742 NRBP1-204ENST00000379863 2174 ntTSL 5 BASIC16.27■□□□□ 0.2
NPAS1Q99742 RNFT2-204ENST00000407967 2415 ntTSL 5 BASIC16.27■□□□□ 0.2
NPAS1Q99742 NDUFA10-202ENST00000307300 1313 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
NPAS1Q99742 KRT18P1-202ENST00000452408 1331 ntBASIC16.27■□□□□ 0.2
NPAS1Q99742 TAX1BP3-202ENST00000611779 1302 ntTSL 2 BASIC16.27■□□□□ 0.2
NPAS1Q99742 FERMT2-204ENST00000399304 2082 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
NPAS1Q99742 A4GALT-203ENST00000401850 2321 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 49.5 ms