Protein–RNA interactions for Protein: Q96RY7

IFT140, Intraflagellar transport protein 140 homolog, humanhuman

Predictions only

Length 1,462 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
IFT140Q96RY7 AC009336.1-201ENST00000608941 1553 ntBASIC29.35■■■□□ 2.29
IFT140Q96RY7 PNKD-201ENST00000248451 758 ntTSL 1 (best) BASIC29.35■■■□□ 2.29
IFT140Q96RY7 SLC25A39P2-201ENST00000537614 270 ntBASIC29.35■■■□□ 2.29
IFT140Q96RY7 SPDYE22P-201ENST00000582158 798 ntBASIC29.35■■■□□ 2.29
IFT140Q96RY7 AC243571.2-201ENST00000615265 628 ntTSL 3 BASIC29.35■■■□□ 2.29
IFT140Q96RY7 SLC16A3-221ENST00000617373 2048 ntAPPRIS P1 TSL 5 BASIC29.35■■■□□ 2.29
IFT140Q96RY7 SLC16A3-222ENST00000619321 2015 ntAPPRIS P1 TSL 5 BASIC29.35■■■□□ 2.29
IFT140Q96RY7 MAP4K1-203ENST00000586296 1363 ntTSL 5 BASIC29.34■■■□□ 2.29
IFT140Q96RY7 MYEOV-202ENST00000441339 1996 ntAPPRIS P3 TSL 2 BASIC29.34■■■□□ 2.29
IFT140Q96RY7 BIN1-203ENST00000346226 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC29.34■■■□□ 2.29
IFT140Q96RY7 CTNNBL1-204ENST00000405275 2076 ntTSL 5 BASIC29.34■■■□□ 2.29
IFT140Q96RY7 NYAP1-202ENST00000454988 2777 ntTSL 5 BASIC29.34■■■□□ 2.29
IFT140Q96RY7 PQLC2L-201ENST00000312275 1201 ntAPPRIS ALT2 TSL 1 (best) BASIC29.34■■■□□ 2.29
IFT140Q96RY7 COX5BP8-201ENST00000416911 349 ntBASIC29.34■■■□□ 2.29
IFT140Q96RY7 HEBP2-202ENST00000448741 661 ntTSL 5 BASIC29.34■■■□□ 2.29
IFT140Q96RY7 BAD-207ENST00000544785 525 ntTSL 3 BASIC29.34■■■□□ 2.29
IFT140Q96RY7 WASHC3-213ENST00000545679 865 ntTSL 2 BASIC29.34■■■□□ 2.29
IFT140Q96RY7 AC040963.1-202ENST00000589729 644 ntTSL 5 BASIC29.34■■■□□ 2.29
IFT140Q96RY7 GMFG-207ENST00000598034 1028 ntAPPRIS ALT1 TSL 1 (best) BASIC29.34■■■□□ 2.29
IFT140Q96RY7 PDLIM3-213ENST00000629667 1016 ntTSL 5 BASIC29.34■■■□□ 2.29
IFT140Q96RY7 FAM172A-206ENST00000509163 1369 ntTSL 2 BASIC29.34■■■□□ 2.29
IFT140Q96RY7 AC097637.2-201ENST00000624096 1997 ntBASIC29.34■■■□□ 2.29
IFT140Q96RY7 GMCL1P1-201ENST00000463439 1581 ntBASIC29.33■■■□□ 2.29
IFT140Q96RY7 NAF1-202ENST00000422287 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC29.33■■■□□ 2.29
IFT140Q96RY7 SSR4-204ENST00000370087 745 ntAPPRIS P1 TSL 3 BASIC29.33■■■□□ 2.29
IFT140Q96RY7 NPY-203ENST00000407573 705 ntAPPRIS P1 TSL 3 BASIC29.33■■■□□ 2.29
IFT140Q96RY7 HNRNPA1P40-201ENST00000426371 1278 ntBASIC29.33■■■□□ 2.29
IFT140Q96RY7 LEPROTL1-203ENST00000518001 589 ntTSL 4 BASIC29.33■■■□□ 2.29
IFT140Q96RY7 TRAPPC6A-202ENST00000585934 758 ntAPPRIS P1 TSL 1 (best) BASIC29.33■■■□□ 2.29
IFT140Q96RY7 AL158211.3-201ENST00000607385 239 ntBASIC29.33■■■□□ 2.29
IFT140Q96RY7 AL390754.1-201ENST00000619088 582 ntBASIC29.33■■■□□ 2.29
IFT140Q96RY7 NR5A1-204ENST00000620110 2975 ntTSL 5 BASIC29.33■■■□□ 2.29
IFT140Q96RY7 TMEM37-201ENST00000306406 1688 ntAPPRIS P1 TSL 1 (best) BASIC29.33■■■□□ 2.29
IFT140Q96RY7 TMEM175-222ENST00000622959 1967 ntTSL 1 (best) BASIC29.32■■■□□ 2.28
IFT140Q96RY7 CPZ-202ENST00000360986 2267 ntAPPRIS ALT2 TSL 1 (best) BASIC29.32■■■□□ 2.28
IFT140Q96RY7 ALDH16A1-202ENST00000455361 2470 ntTSL 2 BASIC29.32■■■□□ 2.28
IFT140Q96RY7 CRYBA2-201ENST00000295728 893 ntAPPRIS P1 TSL 1 (best) BASIC29.32■■■□□ 2.28
IFT140Q96RY7 LSM1-201ENST00000311351 1147 ntAPPRIS P1 TSL 1 (best) BASIC29.32■■■□□ 2.28
IFT140Q96RY7 C1orf43-203ENST00000368516 872 ntTSL 2 BASIC29.32■■■□□ 2.28
IFT140Q96RY7 ZC3H12D-202ENST00000409948 753 ntTSL 3 BASIC29.32■■■□□ 2.28
IFT140Q96RY7 TREML5P-201ENST00000421694 576 ntBASIC29.32■■■□□ 2.28
IFT140Q96RY7 AC005237.2-201ENST00000434368 219 ntBASIC29.32■■■□□ 2.28
IFT140Q96RY7 AC022494.1-201ENST00000466044 728 ntBASIC29.32■■■□□ 2.28
IFT140Q96RY7 AC079140.1-201ENST00000508039 487 ntBASIC29.32■■■□□ 2.28
IFT140Q96RY7 FAM86C2P-203ENST00000528684 1004 ntBASIC29.32■■■□□ 2.28
IFT140Q96RY7 CD4-210ENST00000541982 1187 ntTSL 1 (best) BASIC29.32■■■□□ 2.28
IFT140Q96RY7 GALNT9-208ENST00000541995 1001 ntTSL 1 (best) BASIC29.32■■■□□ 2.28
IFT140Q96RY7 TUBA1A-203ENST00000546918 984 ntTSL 3 BASIC29.32■■■□□ 2.28
IFT140Q96RY7 MOB3A-209ENST00000592280 1071 ntAPPRIS P1 TSL 1 (best) BASIC29.32■■■□□ 2.28
IFT140Q96RY7 AC108010.1-201ENST00000605862 1107 ntTSL 5 BASIC29.32■■■□□ 2.28
IFT140Q96RY7 R3HDML-201ENST00000217043 1377 ntAPPRIS P1 TSL 1 (best) BASIC29.32■■■□□ 2.28
IFT140Q96RY7 CD1B-201ENST00000368168 1395 ntAPPRIS P1 TSL 1 (best) BASIC29.32■■■□□ 2.28
IFT140Q96RY7 MBL1P-201ENST00000480805 1424 ntTSL 1 (best) BASIC29.32■■■□□ 2.28
IFT140Q96RY7 MRFAP1-201ENST00000320912 2049 ntAPPRIS P1 TSL 2 BASIC29.32■■■□□ 2.28
IFT140Q96RY7 SH3BP2-202ENST00000435136 2318 ntAPPRIS P3 TSL 2 BASIC29.32■■■□□ 2.28
IFT140Q96RY7 EFHD1-201ENST00000264059 2259 ntAPPRIS P1 TSL 1 (best) BASIC29.31■■■□□ 2.28
IFT140Q96RY7 AL049812.1-201ENST00000432563 2267 ntBASIC29.31■■■□□ 2.28
IFT140Q96RY7 MATN4-202ENST00000360607 2127 ntTSL 1 (best) BASIC29.31■■■□□ 2.28
IFT140Q96RY7 DNAAF4-202ENST00000348518 1897 ntAPPRIS P1 TSL 5 BASIC29.31■■■□□ 2.28
IFT140Q96RY7 TEKT5-201ENST00000283025 1612 ntAPPRIS P1 TSL 1 (best) BASIC29.31■■■□□ 2.28
IFT140Q96RY7 DSCR9-201ENST00000454482 1644 ntTSL 1 (best) BASIC29.31■■■□□ 2.28
IFT140Q96RY7 URAHP-203ENST00000517889 1381 ntTSL 1 (best) BASIC29.31■■■□□ 2.28
IFT140Q96RY7 PDCL3-201ENST00000264254 1337 ntAPPRIS P1 TSL 1 (best) BASIC29.31■■■□□ 2.28
IFT140Q96RY7 AL136311.1-206ENST00000416069 899 ntTSL 1 (best) BASIC29.31■■■□□ 2.28
IFT140Q96RY7 GOLGA6L11P-201ENST00000417252 1298 ntBASIC29.31■■■□□ 2.28
IFT140Q96RY7 MOGAT1-201ENST00000446656 1048 ntAPPRIS P1 TSL 5 BASIC29.31■■■□□ 2.28
IFT140Q96RY7 RBAKDN-201ENST00000498308 514 ntTSL 1 (best) BASIC29.31■■■□□ 2.28
IFT140Q96RY7 STK19B-204ENST00000512515 211 ntBASIC29.31■■■□□ 2.28
IFT140Q96RY7 CERNA1-201ENST00000559779 908 ntTSL 3 BASIC29.31■■■□□ 2.28
IFT140Q96RY7 UBE2Z-201ENST00000360943 3122 ntAPPRIS P1 TSL 1 (best) BASIC29.31■■■□□ 2.28
IFT140Q96RY7 USP39-202ENST00000409025 1946 ntTSL 5 BASIC29.31■■■□□ 2.28
IFT140Q96RY7 TMEM200B-202ENST00000521452 2501 ntAPPRIS P1 TSL 1 (best) BASIC29.31■■■□□ 2.28
IFT140Q96RY7 AZI2-205ENST00000420543 1366 ntTSL 3 BASIC29.3■■■□□ 2.28
IFT140Q96RY7 GRHPR-201ENST00000318158 1280 ntAPPRIS P1 TSL 1 (best) BASIC29.3■■■□□ 2.28
IFT140Q96RY7 CD99L2-202ENST00000355149 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC29.3■■■□□ 2.28
IFT140Q96RY7 LCE3E-201ENST00000368789 611 ntAPPRIS P1 TSL 1 (best) BASIC29.3■■■□□ 2.28
IFT140Q96RY7 PTPA-213ENST00000419582 952 ntTSL 1 (best) BASIC29.3■■■□□ 2.28
IFT140Q96RY7 AL513480.1-201ENST00000451731 511 ntBASIC29.3■■■□□ 2.28
IFT140Q96RY7 ITGB1BP1-205ENST00000456913 1043 ntTSL 2 BASIC29.3■■■□□ 2.28
IFT140Q96RY7 ITGB1BP1-216ENST00000488451 874 ntTSL 3 BASIC29.3■■■□□ 2.28
IFT140Q96RY7 AC091133.2-201ENST00000505903 428 ntTSL 3 BASIC29.3■■■□□ 2.28
IFT140Q96RY7 AL133467.1-201ENST00000554161 993 ntTSL 2 BASIC29.3■■■□□ 2.28
IFT140Q96RY7 BSG-214ENST00000614867 960 ntTSL 3 BASIC29.3■■■□□ 2.28
IFT140Q96RY7 AC025048.6-201ENST00000634326 1161 ntBASIC29.3■■■□□ 2.28
IFT140Q96RY7 AL358472.5-202ENST00000641448 1267 ntBASIC29.3■■■□□ 2.28
IFT140Q96RY7 FBLN1-201ENST00000262722 2251 ntTSL 1 (best) BASIC29.3■■■□□ 2.28
IFT140Q96RY7 NR2C1-219ENST00000622476 1561 ntTSL 5 BASIC29.3■■■□□ 2.28
IFT140Q96RY7 AC140658.5-201ENST00000438532 169 ntBASIC29.29■■■□□ 2.28
IFT140Q96RY7 LACTB2-203ENST00000522447 1034 ntAPPRIS P1 TSL 2 BASIC29.29■■■□□ 2.28
IFT140Q96RY7 INO80E-210ENST00000567705 880 ntTSL 3 BASIC29.29■■■□□ 2.28
IFT140Q96RY7 AC005391.1-201ENST00000613285 341 ntTSL 3 BASIC29.29■■■□□ 2.28
IFT140Q96RY7 TTC29-201ENST00000325106 1785 ntAPPRIS P3 TSL 1 (best) BASIC29.29■■■□□ 2.28
IFT140Q96RY7 TTC29-205ENST00000504425 1777 ntAPPRIS ALT2 TSL 5 BASIC29.29■■■□□ 2.28
IFT140Q96RY7 UNC5C-202ENST00000504962 1789 ntTSL 2 BASIC29.29■■■□□ 2.28
IFT140Q96RY7 DOC2A-208ENST00000564944 1782 ntAPPRIS P1 TSL 5 BASIC29.29■■■□□ 2.28
IFT140Q96RY7 PSRC1-203ENST00000369907 1717 ntAPPRIS P3 TSL 1 (best) BASIC29.29■■■□□ 2.28
IFT140Q96RY7 PSRC1-206ENST00000409267 1730 ntAPPRIS P3 TSL 5 BASIC29.29■■■□□ 2.28
IFT140Q96RY7 ANKRD53-202ENST00000360589 1666 ntAPPRIS ALT2 TSL 2 BASIC29.29■■■□□ 2.28
IFT140Q96RY7 FAM72B-207ENST00000619376 1659 ntTSL 1 (best) BASIC29.29■■■□□ 2.28
IFT140Q96RY7 CCM2L-201ENST00000262659 2523 ntAPPRIS P1 TSL 1 (best) BASIC29.29■■■□□ 2.28
Retrieved 100 of 98,524 protein–RNA pairs in 33.4 ms