Protein–RNA interactions for Protein: Q33E94

RFX4, Transcription factor RFX4, humanhuman

Predictions only

Length 735 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX4Q33E94 DKC1-201ENST00000369550 2577 ntAPPRIS P3 TSL 1 (best) BASIC16.66■□□□□ 0.26
RFX4Q33E94 TSC2-201ENST00000219476 6156 ntAPPRIS P3 TSL 5 BASIC16.66■□□□□ 0.26
RFX4Q33E94 NSMF-204ENST00000371473 3556 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
RFX4Q33E94 TEX261-201ENST00000272438 3441 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
RFX4Q33E94 SLC22A18AS-203ENST00000625099 1659 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
RFX4Q33E94 IL12RB2-202ENST00000371000 2454 ntTSL 2 BASIC16.65■□□□□ 0.26
RFX4Q33E94 MRTO4-201ENST00000330263 2315 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
RFX4Q33E94 PPM1M-202ENST00000323588 2193 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
RFX4Q33E94 AL139130.1-201ENST00000451362 5586 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
RFX4Q33E94 GABRB2-206ENST00000520240 2030 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
RFX4Q33E94 PELI2-201ENST00000267460 5909 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
RFX4Q33E94 ALDH16A1-201ENST00000293350 3153 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
RFX4Q33E94 NAP1L4-201ENST00000380542 2511 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
RFX4Q33E94 BAIAP2L2-201ENST00000332536 2065 ntAPPRIS ALT2 TSL 5 BASIC16.65■□□□□ 0.26
RFX4Q33E94 HECTD2-204ENST00000446394 4939 ntTSL 2 BASIC16.65■□□□□ 0.26
RFX4Q33E94 CLEC18C-201ENST00000314151 1934 ntAPPRIS P2 TSL 1 (best) BASIC16.65■□□□□ 0.26
RFX4Q33E94 CLEC18A-208ENST00000568461 1934 ntAPPRIS P2 TSL 1 (best) BASIC16.65■□□□□ 0.26
RFX4Q33E94 CGB7-202ENST00000596965 1949 ntAPPRIS P1 TSL 2 BASIC16.65■□□□□ 0.26
RFX4Q33E94 PAPD5-202ENST00000436909 4635 ntAPPRIS P1 TSL 2 BASIC16.65■□□□□ 0.26
RFX4Q33E94 ITGB2-AS1-202ENST00000441379 2282 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
RFX4Q33E94 HAS3-201ENST00000219322 1163 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
RFX4Q33E94 S100A14-203ENST00000368701 1080 ntAPPRIS P1 TSL 2 BASIC16.65■□□□□ 0.26
RFX4Q33E94 C9orf129-201ENST00000375419 1154 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
RFX4Q33E94 TMEM240-201ENST00000378733 718 ntAPPRIS P1 TSL 2 BASIC16.65■□□□□ 0.26
RFX4Q33E94 TRPT1-203ENST00000394547 865 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
RFX4Q33E94 MFAP1P1-201ENST00000442257 1255 ntBASIC16.65■□□□□ 0.26
RFX4Q33E94 AC016582.3-201ENST00000589653 561 ntTSL 4 BASIC16.65■□□□□ 0.26
RFX4Q33E94 PTPRA-205ENST00000399903 3337 ntTSL 5 BASIC16.65■□□□□ 0.26
RFX4Q33E94 JMJD6-202ENST00000397625 1603 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
RFX4Q33E94 DOC2A-209ENST00000564979 1630 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
RFX4Q33E94 VASN-201ENST00000304735 2806 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
RFX4Q33E94 TCTN1-229ENST00000614115 1965 ntTSL 5 BASIC16.65■□□□□ 0.26
RFX4Q33E94 ANKRD29-208ENST00000592179 3361 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
RFX4Q33E94 C14orf180-201ENST00000331952 1455 ntAPPRIS ALT2 TSL 2 BASIC16.65■□□□□ 0.26
RFX4Q33E94 OGFOD2-222ENST00000545317 1481 ntTSL 2 BASIC16.65■□□□□ 0.26
RFX4Q33E94 CDK11B-201ENST00000340677 2534 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
RFX4Q33E94 SYT15-205ENST00000503753 1331 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
RFX4Q33E94 KMT5A-202ENST00000402868 3140 ntAPPRIS P2 TSL 1 (best) BASIC16.65■□□□□ 0.26
RFX4Q33E94 CFL1-203ENST00000525451 1878 ntAPPRIS P1 TSL 2 BASIC16.65■□□□□ 0.26
RFX4Q33E94 AC116565.2-201ENST00000637674 1854 ntTSL 2 BASIC16.65■□□□□ 0.26
RFX4Q33E94 HNRNPUL2-BSCL2-201ENST00000403734 4001 ntAPPRIS P1 TSL 2 BASIC16.65■□□□□ 0.26
RFX4Q33E94 ERCC2-205ENST00000485403 1538 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
RFX4Q33E94 NBPF11-205ENST00000615281 5494 ntAPPRIS P2 TSL 1 (best) BASIC16.65■□□□□ 0.26
RFX4Q33E94 TTLL10-202ENST00000379289 2259 ntAPPRIS P1 TSL 2 BASIC16.65■□□□□ 0.26
RFX4Q33E94 PRPF31-203ENST00000419967 2269 ntTSL 5 BASIC16.65■□□□□ 0.26
RFX4Q33E94 EML3-201ENST00000278845 3017 ntAPPRIS ALT1 TSL 5 BASIC16.64■□□□□ 0.26
RFX4Q33E94 LGI4-202ENST00000392225 2891 ntTSL 5 BASIC16.64■□□□□ 0.25
RFX4Q33E94 RAB33B-201ENST00000305626 4562 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
RFX4Q33E94 ZDHHC20-202ENST00000382466 5338 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.25
RFX4Q33E94 SYT6-205ENST00000609117 4424 ntTSL 5 BASIC16.64■□□□□ 0.25
RFX4Q33E94 MON2-203ENST00000546600 6130 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
RFX4Q33E94 SNAPC4-201ENST00000298532 5010 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
RFX4Q33E94 ARID3C-201ENST00000378909 1411 ntAPPRIS P1 TSL 2 BASIC16.64■□□□□ 0.25
RFX4Q33E94 DUSP8-201ENST00000331588 4455 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
RFX4Q33E94 DFNA5-203ENST00000409970 2005 ntTSL 5 BASIC16.64■□□□□ 0.25
RFX4Q33E94 DYNC1I1-212ENST00000630942 2249 ntTSL 2 BASIC16.64■□□□□ 0.25
RFX4Q33E94 C5orf30-201ENST00000319933 3049 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
RFX4Q33E94 LINC01743-201ENST00000366308 964 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
RFX4Q33E94 CTNNBIP1-204ENST00000400904 1206 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
RFX4Q33E94 CCDC74B-204ENST00000409234 871 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
RFX4Q33E94 CA15P1-201ENST00000481698 905 ntBASIC16.64■□□□□ 0.25
RFX4Q33E94 AF131216.3-201ENST00000525867 1099 ntTSL 2 BASIC16.64■□□□□ 0.25
RFX4Q33E94 AC011446.2-202ENST00000592882 756 ntTSL 3 BASIC16.64■□□□□ 0.25
RFX4Q33E94 ELF2-204ENST00000394235 4012 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.25
RFX4Q33E94 HSPA1A-201ENST00000375651 2483 ntAPPRIS P1 BASIC16.64■□□□□ 0.25
RFX4Q33E94 EIF2AK4-201ENST00000263791 5499 ntAPPRIS P1 TSL 2 BASIC16.64■□□□□ 0.25
RFX4Q33E94 PPP3CA-201ENST00000323055 4519 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
RFX4Q33E94 TOX2-205ENST00000423191 1709 ntTSL 2 BASIC16.64■□□□□ 0.25
RFX4Q33E94 SYT17-207ENST00000568115 1721 ntTSL 5 BASIC16.64■□□□□ 0.25
RFX4Q33E94 STAT3-201ENST00000264657 5047 ntAPPRIS P4 TSL 1 (best) BASIC16.64■□□□□ 0.25
RFX4Q33E94 DCAF12L2-201ENST00000360028 2599 ntAPPRIS P1 BASIC16.64■□□□□ 0.25
RFX4Q33E94 KRT23-201ENST00000209718 1987 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
RFX4Q33E94 UROS-202ENST00000368778 1556 ntTSL 2 BASIC16.64■□□□□ 0.25
RFX4Q33E94 KMT5C-212ENST00000630497 2037 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
RFX4Q33E94 DOCK7-203ENST00000404627 2678 ntTSL 2 BASIC16.63■□□□□ 0.25
RFX4Q33E94 CREB3L1-206ENST00000621158 2687 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
RFX4Q33E94 AL031282.2-201ENST00000598846 5079 ntTSL 2 BASIC16.63■□□□□ 0.25
RFX4Q33E94 SERINC2-205ENST00000536384 2062 ntTSL 2 BASIC16.63■□□□□ 0.25
RFX4Q33E94 NUP62-211ENST00000597029 2053 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
RFX4Q33E94 MEI1-215ENST00000540833 2326 ntTSL 5 BASIC16.63■□□□□ 0.25
RFX4Q33E94 AC055811.2-201ENST00000427497 1693 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
RFX4Q33E94 WDR13-202ENST00000376729 5469 ntAPPRIS P1 TSL 5 BASIC16.63■□□□□ 0.25
RFX4Q33E94 BTBD1-201ENST00000261721 3297 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
RFX4Q33E94 EIF2B4-210ENST00000493344 1949 ntTSL 5 BASIC16.63■□□□□ 0.25
RFX4Q33E94 PCDHA13-202ENST00000409494 4884 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
RFX4Q33E94 PPOX-202ENST00000367999 1740 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
RFX4Q33E94 RDH8-203ENST00000591589 1715 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
RFX4Q33E94 TIMM17B-201ENST00000376582 950 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
RFX4Q33E94 FAM131A-208ENST00000453072 1038 ntTSL 2 BASIC16.63■□□□□ 0.25
RFX4Q33E94 FAM201B-201ENST00000458407 597 ntBASIC16.63■□□□□ 0.25
RFX4Q33E94 USP46-AS1-201ENST00000503051 1048 ntTSL 3 BASIC16.63■□□□□ 0.25
RFX4Q33E94 NUDT16P1-203ENST00000513809 620 ntBASIC16.63■□□□□ 0.25
RFX4Q33E94 DUTP2-201ENST00000519164 463 ntBASIC16.63■□□□□ 0.25
RFX4Q33E94 FOSL1-204ENST00000532401 1132 ntTSL 2 BASIC16.63■□□□□ 0.25
RFX4Q33E94 GRAMD1B-209ENST00000533341 707 ntTSL 2 BASIC16.63■□□□□ 0.25
RFX4Q33E94 FAM213B-215ENST00000537325 1096 ntAPPRIS ALT2 TSL 2 BASIC16.63■□□□□ 0.25
RFX4Q33E94 IGHMBP2-205ENST00000539224 785 ntTSL 3 BASIC16.63■□□□□ 0.25
RFX4Q33E94 AC097662.2-201ENST00000641359 267 ntAPPRIS P1 BASIC16.63■□□□□ 0.25
RFX4Q33E94 AC002310.5-201ENST00000569360 1515 ntAPPRIS P1 TSL 2 BASIC16.63■□□□□ 0.25
RFX4Q33E94 TCOF1-206ENST00000445265 4825 ntAPPRIS ALT2 TSL 5 BASIC16.63■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 27.1 ms