Protein–RNA interactions for Protein: P49959

MRE11, Double-strand break repair protein MRE11, humanhuman

Predictions only

Length 708 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MRE11P49959 FLJ38576-201ENST00000623820 2459 ntBASIC20.86■□□□□ 0.93
MRE11P49959 AGXT-201ENST00000307503 1865 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
MRE11P49959 ST3GAL3-205ENST00000347631 1324 ntTSL 5 BASIC20.86■□□□□ 0.93
MRE11P49959 MAPRE1-201ENST00000375571 2623 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
MRE11P49959 SIPA1-201ENST00000394224 3628 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
MRE11P49959 METTL5-201ENST00000260953 1010 ntAPPRIS P2 TSL 1 (best) BASIC20.86■□□□□ 0.93
MRE11P49959 TYMSOS-201ENST00000323813 844 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
MRE11P49959 LINC00421-201ENST00000413833 1054 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
MRE11P49959 SPAG16-207ENST00000432529 1250 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
MRE11P49959 UNC5B-AS1-201ENST00000447119 647 ntTSL 2 BASIC20.86■□□□□ 0.93
MRE11P49959 AC104076.2-201ENST00000448912 469 ntBASIC20.86■□□□□ 0.93
MRE11P49959 HOXB-AS3-204ENST00000466037 522 ntTSL 3 BASIC20.86■□□□□ 0.93
MRE11P49959 RARRES2-205ENST00000482669 563 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
MRE11P49959 CA3-AS1-201ENST00000517697 559 ntTSL 4 BASIC20.86■□□□□ 0.93
MRE11P49959 PTP4A3-206ENST00000524028 963 ntTSL 5 BASIC20.86■□□□□ 0.93
MRE11P49959 RARRES2P10-201ENST00000564312 460 ntBASIC20.86■□□□□ 0.93
MRE11P49959 WWOX-216ENST00000569818 525 ntBASIC20.86■□□□□ 0.93
MRE11P49959 AC008481.3-201ENST00000585656 727 ntAPPRIS P1 TSL 5 BASIC20.86■□□□□ 0.93
MRE11P49959 AC110285.5-201ENST00000611501 352 ntBASIC20.86■□□□□ 0.93
MRE11P49959 AL358472.4-201ENST00000633140 710 ntBASIC20.86■□□□□ 0.93
MRE11P49959 P4HB-203ENST00000439918 1502 ntTSL 5 BASIC20.86■□□□□ 0.93
MRE11P49959 GLS2-216ENST00000610413 2296 ntTSL 5 BASIC20.86■□□□□ 0.93
MRE11P49959 LINC00466-207ENST00000634725 1736 ntTSL 5 BASIC20.86■□□□□ 0.93
MRE11P49959 TACO1-201ENST00000258975 1469 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
MRE11P49959 C19orf25-206ENST00000588849 1472 ntTSL 5 BASIC20.86■□□□□ 0.93
MRE11P49959 SLC35G1-202ENST00000427197 2402 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
MRE11P49959 PRSS53-201ENST00000280606 2181 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
MRE11P49959 TBC1D3I-202ENST00000618620 1900 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
MRE11P49959 ATP6AP2-214ENST00000636287 1904 ntAPPRIS ALT2 TSL 5 BASIC20.86■□□□□ 0.93
MRE11P49959 FGD5-201ENST00000285046 5720 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
MRE11P49959 PCDHA5-202ENST00000529859 5218 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
MRE11P49959 SESN1-204ENST00000436639 3509 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
MRE11P49959 DRC3-201ENST00000313838 2064 ntAPPRIS P1 TSL 5 BASIC20.85■□□□□ 0.93
MRE11P49959 CLN3-206ENST00000360019 1840 ntTSL 2 BASIC20.85■□□□□ 0.93
MRE11P49959 LMNA-205ENST00000368299 2253 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
MRE11P49959 MYLKP1-201ENST00000509077 1580 ntBASIC20.85■□□□□ 0.93
MRE11P49959 RABEP1-202ENST00000537505 5365 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
MRE11P49959 GSDMD-201ENST00000262580 1762 ntAPPRIS P2 TSL 1 (best) BASIC20.85■□□□□ 0.93
MRE11P49959 NDUFB9-206ENST00000522532 1319 ntTSL 2 BASIC20.85■□□□□ 0.93
MRE11P49959 TSPAN3-207ENST00000559494 1326 ntTSL 5 BASIC20.85■□□□□ 0.93
MRE11P49959 ACAA1-201ENST00000301810 1540 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
MRE11P49959 KRT18P55-202ENST00000578578 1546 ntBASIC20.85■□□□□ 0.93
MRE11P49959 HRASLS5-206ENST00000540857 3032 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
MRE11P49959 YTHDF3-215ENST00000621957 2387 ntAPPRIS ALT1 TSL 5 BASIC20.85■□□□□ 0.93
MRE11P49959 ZNF213-206ENST00000574902 3208 ntAPPRIS P1 TSL 5 BASIC20.85■□□□□ 0.93
MRE11P49959 CDH6-205ENST00000514738 2569 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
MRE11P49959 GBA2-203ENST00000378103 3611 ntAPPRIS P3 TSL 1 (best) BASIC20.85■□□□□ 0.93
MRE11P49959 SULT1A1-202ENST00000350842 1282 ntTSL 3 BASIC20.85■□□□□ 0.93
MRE11P49959 DYNLRB1-203ENST00000374846 1044 ntTSL 5 BASIC20.85■□□□□ 0.93
MRE11P49959 CHCHD3-203ENST00000448878 1038 ntTSL 5 BASIC20.85■□□□□ 0.93
MRE11P49959 AC080075.1-201ENST00000469747 427 ntTSL 2 BASIC20.85■□□□□ 0.93
MRE11P49959 CHCHD6-204ENST00000508789 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
MRE11P49959 DYNLL1-205ENST00000548342 662 ntAPPRIS P1 TSL 2 BASIC20.85■□□□□ 0.93
MRE11P49959 AC015712.2-203ENST00000560461 688 ntTSL 3 BASIC20.85■□□□□ 0.93
MRE11P49959 PTGIR-202ENST00000594275 699 ntTSL 3 BASIC20.85■□□□□ 0.93
MRE11P49959 PTGIR-206ENST00000598865 724 ntTSL 3 BASIC20.85■□□□□ 0.93
MRE11P49959 AC004706.3-201ENST00000634558 1009 ntTSL 5 BASIC20.85■□□□□ 0.93
MRE11P49959 TLE2-217ENST00000590536 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
MRE11P49959 KRT8P32-201ENST00000512863 1461 ntBASIC20.85■□□□□ 0.93
MRE11P49959 PLPPR2-201ENST00000251473 2727 ntAPPRIS P3 TSL 1 (best) BASIC20.85■□□□□ 0.93
MRE11P49959 TMEM175-201ENST00000264771 1860 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
MRE11P49959 PCSK5-201ENST00000376752 5756 ntAPPRIS P3 TSL 1 (best) BASIC20.85■□□□□ 0.93
MRE11P49959 C19orf25-201ENST00000427685 1410 ntTSL 2 BASIC20.85■□□□□ 0.93
MRE11P49959 ITPK1-210ENST00000556603 3174 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
MRE11P49959 ZNF514-202ENST00000411425 2755 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
MRE11P49959 CCDC120-206ENST00000603986 2379 ntAPPRIS ALT2 TSL 2 BASIC20.85■□□□□ 0.93
MRE11P49959 PPP1R7-202ENST00000272983 1954 ntTSL 2 BASIC20.85■□□□□ 0.93
MRE11P49959 HMBOX1-212ENST00000558662 1765 ntTSL 5 BASIC20.85■□□□□ 0.93
MRE11P49959 ETV7-204ENST00000373738 1570 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
MRE11P49959 ETV7-207ENST00000620358 1599 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
MRE11P49959 L1CAM-203ENST00000370055 4655 ntTSL 5 BASIC20.84■□□□□ 0.93
MRE11P49959 MEX3C-204ENST00000616921 3269 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
MRE11P49959 VIPR1-217ENST00000543411 2681 ntTSL 2 BASIC20.84■□□□□ 0.93
MRE11P49959 NXN-202ENST00000537628 1340 ntTSL 3 BASIC20.84■□□□□ 0.93
MRE11P49959 CDKN2B-AS1-217ENST00000585267 1337 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
MRE11P49959 PCBP4-203ENST00000428823 1835 ntTSL 5 BASIC20.84■□□□□ 0.93
MRE11P49959 HRAS-201ENST00000311189 894 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
MRE11P49959 STK39-201ENST00000355999 3820 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
MRE11P49959 UNC50-201ENST00000357765 1143 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
MRE11P49959 AC115618.1-201ENST00000376775 549 ntTSL 3 BASIC20.84■□□□□ 0.93
MRE11P49959 LINC01293-201ENST00000453951 1266 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
MRE11P49959 C12orf76-204ENST00000547573 607 ntTSL 3 BASIC20.84■□□□□ 0.93
MRE11P49959 BDKRB1-204ENST00000611804 1085 ntAPPRIS P1 BASIC20.84■□□□□ 0.93
MRE11P49959 CORO1B-210ENST00000627576 960 ntTSL 5 BASIC20.84■□□□□ 0.93
MRE11P49959 DECR2-212ENST00000627716 352 ntTSL 2 BASIC20.84■□□□□ 0.93
MRE11P49959 BEST2-202ENST00000549706 2183 ntAPPRIS P1 TSL 5 BASIC20.84■□□□□ 0.93
MRE11P49959 FZR1-203ENST00000441788 5212 ntAPPRIS P3 TSL 1 (best) BASIC20.84■□□□□ 0.93
MRE11P49959 CDC25B-202ENST00000340833 1978 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
MRE11P49959 LRP8-207ENST00000465675 2670 ntTSL 2 BASIC20.84■□□□□ 0.93
MRE11P49959 SGCB-201ENST00000381431 4431 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
MRE11P49959 VIM-201ENST00000224237 1868 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
MRE11P49959 LZTS3-202ENST00000337576 4238 ntAPPRIS P1 TSL 5 BASIC20.83■□□□□ 0.93
MRE11P49959 SOX30-202ENST00000311371 2716 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.93
MRE11P49959 CCDC103-202ENST00000410006 921 ntAPPRIS P1 TSL 2 BASIC20.83■□□□□ 0.93
MRE11P49959 AL450487.1-201ENST00000426799 995 ntBASIC20.83■□□□□ 0.93
MRE11P49959 ZNF534-203ENST00000432303 956 ntTSL 2 BASIC20.83■□□□□ 0.93
MRE11P49959 HES2-206ENST00000489730 730 ntTSL 2 BASIC20.83■□□□□ 0.93
MRE11P49959 AC006942.1-201ENST00000600669 520 ntTSL 2 BASIC20.83■□□□□ 0.93
MRE11P49959 AC008735.6-201ENST00000635964 1292 ntAPPRIS P1 TSL 2 BASIC20.83■□□□□ 0.93
MRE11P49959 SAAL1-202ENST00000524803 1582 ntAPPRIS P2 TSL 1 (best) BASIC20.83■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 44.1 ms