Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 CDK11B-209ENST00000629312 2496 ntTSL 5 BASIC21.09■□□□□ 0.97
HMGB1P09429 ACY1-210ENST00000494103 1298 ntTSL 3 BASIC21.09■□□□□ 0.97
HMGB1P09429 TFF3-204ENST00000518498 1109 ntAPPRIS P2 TSL 1 (best) BASIC21.09■□□□□ 0.97
HMGB1P09429 COLCA2-205ENST00000614153 1264 ntTSL 3 BASIC21.09■□□□□ 0.97
HMGB1P09429 AL590326.2-201ENST00000625139 305 ntBASIC21.09■□□□□ 0.97
HMGB1P09429 RAB4A-205ENST00000618010 2799 ntTSL 3 BASIC21.09■□□□□ 0.97
HMGB1P09429 POLR3D-201ENST00000306433 1931 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
HMGB1P09429 ANKRD6-201ENST00000339746 3073 ntAPPRIS ALT1 TSL 1 (best) BASIC21.09■□□□□ 0.97
HMGB1P09429 PTCHD3-202ENST00000622555 1720 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
HMGB1P09429 IVNS1ABP-202ENST00000367498 4199 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
HMGB1P09429 ZNF274-202ENST00000345813 2678 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
HMGB1P09429 C3orf18-201ENST00000357203 2655 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
HMGB1P09429 HECTD2-203ENST00000371681 2175 ntTSL 2 BASIC21.09■□□□□ 0.97
HMGB1P09429 AL355312.1-201ENST00000407115 2176 ntBASIC21.09■□□□□ 0.97
HMGB1P09429 ZNF419-204ENST00000415379 2186 ntAPPRIS ALT2 TSL 2 BASIC21.09■□□□□ 0.97
HMGB1P09429 DAG1-220ENST00000539901 5665 ntAPPRIS P1 TSL 5 BASIC21.09■□□□□ 0.97
HMGB1P09429 RAB4B-EGLN2-201ENST00000594136 2554 ntAPPRIS P1 TSL 2 BASIC21.08■□□□□ 0.97
HMGB1P09429 COA5-201ENST00000328709 1754 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
HMGB1P09429 CDH22-203ENST00000537909 3902 ntAPPRIS P1 TSL 2 BASIC21.08■□□□□ 0.97
HMGB1P09429 STAMBPL1-203ENST00000371926 2532 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
HMGB1P09429 CD1E-210ENST00000368165 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC21.08■□□□□ 0.97
HMGB1P09429 PLPP5-202ENST00000422581 853 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
HMGB1P09429 CD1E-214ENST00000452291 745 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
HMGB1P09429 ZNF655-218ENST00000454654 571 ntTSL 4 BASIC21.08■□□□□ 0.97
HMGB1P09429 LINC01105-206ENST00000456327 1434 ntTSL 5 BASIC21.08■□□□□ 0.97
HMGB1P09429 LBX1-AS1-204ENST00000456391 421 ntTSL 5 BASIC21.08■□□□□ 0.97
HMGB1P09429 DEUP1-206ENST00000530273 410 ntTSL 3 BASIC21.08■□□□□ 0.97
HMGB1P09429 AC090616.6-201ENST00000582640 721 ntBASIC21.08■□□□□ 0.97
HMGB1P09429 HNF4A-208ENST00000609795 1192 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
HMGB1P09429 VPS72-207ENST00000640458 689 ntTSL 5 BASIC21.08■□□□□ 0.97
HMGB1P09429 PTPDC1-202ENST00000375360 4517 ntAPPRIS ALT2 TSL 1 (best) BASIC21.08■□□□□ 0.96
HMGB1P09429 ZNF12-204ENST00000405858 5051 ntAPPRIS P4 TSL 1 (best) BASIC21.08■□□□□ 0.96
HMGB1P09429 EWSR1-202ENST00000332035 1989 ntAPPRIS ALT2 TSL 2 BASIC21.08■□□□□ 0.96
HMGB1P09429 JAKMIP1-202ENST00000409021 2975 ntTSL 1 (best) BASIC21.08■□□□□ 0.96
HMGB1P09429 XKR8-201ENST00000373884 2692 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
HMGB1P09429 AHRR-209ENST00000512529 1912 ntTSL 5 BASIC21.08■□□□□ 0.96
HMGB1P09429 PTTG1IP-201ENST00000330938 2760 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
HMGB1P09429 PANX1-202ENST00000436171 2750 ntAPPRIS ALT1 TSL 1 (best) BASIC21.08■□□□□ 0.96
HMGB1P09429 TMEM263-204ENST00000548125 3349 ntAPPRIS P1 TSL 2 BASIC21.07■□□□□ 0.96
HMGB1P09429 PLAUR-201ENST00000221264 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
HMGB1P09429 CCDC91-220ENST00000545336 2738 ntAPPRIS P1 TSL 5 BASIC21.07■□□□□ 0.96
HMGB1P09429 SH3BP5-203ENST00000408919 1880 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
HMGB1P09429 CA7-202ENST00000394069 1713 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
HMGB1P09429 SUPT20H-203ENST00000360252 2843 ntAPPRIS P3 TSL 1 (best) BASIC21.07■□□□□ 0.96
HMGB1P09429 DUS3L-201ENST00000309061 2113 ntAPPRIS P3 TSL 1 (best) BASIC21.07■□□□□ 0.96
HMGB1P09429 RASL11B-201ENST00000248706 1995 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
HMGB1P09429 ATP2A3-201ENST00000309890 4826 ntTSL 5 BASIC21.07■□□□□ 0.96
HMGB1P09429 TMEM198-201ENST00000344458 2393 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
HMGB1P09429 INPP5F-203ENST00000369081 874 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
HMGB1P09429 ZNF32-201ENST00000374433 1137 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
HMGB1P09429 MRPS24-203ENST00000418740 743 ntTSL 2 BASIC21.07■□□□□ 0.96
HMGB1P09429 MOBP-204ENST00000420739 940 ntAPPRIS P4 TSL 5 BASIC21.07■□□□□ 0.96
HMGB1P09429 AC096633.1-201ENST00000422446 749 ntBASIC21.07■□□□□ 0.96
HMGB1P09429 RN7SL606P-201ENST00000472779 293 ntBASIC21.07■□□□□ 0.96
HMGB1P09429 PRKCB-209ENST00000498058 480 ntTSL 3 BASIC21.07■□□□□ 0.96
HMGB1P09429 COX6C-204ENST00000520271 571 ntAPPRIS P1 TSL 2 BASIC21.07■□□□□ 0.96
HMGB1P09429 KRT8P26-201ENST00000534154 1276 ntBASIC21.07■□□□□ 0.96
HMGB1P09429 C17orf49-208ENST00000552402 760 ntTSL 2 BASIC21.07■□□□□ 0.96
HMGB1P09429 GOLGA2P7-203ENST00000557881 896 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
HMGB1P09429 AC002310.4-201ENST00000568114 377 ntAPPRIS P1 TSL 5 BASIC21.07■□□□□ 0.96
HMGB1P09429 FXYD7-203ENST00000586063 456 ntAPPRIS ALT2 TSL 3 BASIC21.07■□□□□ 0.96
HMGB1P09429 NTF6B-201ENST00000591913 560 ntBASIC21.07■□□□□ 0.96
HMGB1P09429 EML2-AS1-203ENST00000623430 886 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
HMGB1P09429 EIF5-201ENST00000216554 5945 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
HMGB1P09429 PODN-203ENST00000395871 2744 ntTSL 5 BASIC21.07■□□□□ 0.96
HMGB1P09429 LMNA-208ENST00000448611 1943 ntTSL 2 BASIC21.07■□□□□ 0.96
HMGB1P09429 LUC7L-204ENST00000397783 1504 ntTSL 2 BASIC21.07■□□□□ 0.96
HMGB1P09429 BX276092.7-203ENST00000637198 1536 ntBASIC21.07■□□□□ 0.96
HMGB1P09429 KAZN-203ENST00000376030 6030 ntAPPRIS P1 TSL 5 BASIC21.07■□□□□ 0.96
HMGB1P09429 KCNK7-204ENST00000394217 1372 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
HMGB1P09429 HERPUD2-202ENST00000396081 3057 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
HMGB1P09429 ARF1-214ENST00000541182 2006 ntAPPRIS P1 TSL 2 BASIC21.07■□□□□ 0.96
HMGB1P09429 TXNRD2-218ENST00000542719 2024 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
HMGB1P09429 LINC00304-203ENST00000565008 1864 ntBASIC21.07■□□□□ 0.96
HMGB1P09429 CLSTN1-202ENST00000377298 5221 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
HMGB1P09429 SDHA-213ENST00000510361 2148 ntTSL 2 BASIC21.07■□□□□ 0.96
HMGB1P09429 AC009041.2-206ENST00000563863 1728 ntTSL 2 BASIC21.07■□□□□ 0.96
HMGB1P09429 KIF21B-203ENST00000422435 5519 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
HMGB1P09429 AC097374.2-201ENST00000618617 1306 ntBASIC21.06■□□□□ 0.96
HMGB1P09429 SNAP91-201ENST00000195649 4434 ntAPPRIS ALT2 TSL 5 BASIC21.06■□□□□ 0.96
HMGB1P09429 SNAP91-204ENST00000369694 4449 ntAPPRIS P2 TSL 5 BASIC21.06■□□□□ 0.96
HMGB1P09429 HTR7P1-202ENST00000624664 4411 ntBASIC21.06■□□□□ 0.96
HMGB1P09429 CGB7-202ENST00000596965 1949 ntAPPRIS P1 TSL 2 BASIC21.06■□□□□ 0.96
HMGB1P09429 SOCS2-212ENST00000622746 2881 ntAPPRIS P1 TSL 3 BASIC21.06■□□□□ 0.96
HMGB1P09429 PLA2R1-202ENST00000392771 5160 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
HMGB1P09429 ZDHHC2-201ENST00000262096 6377 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
HMGB1P09429 CXorf40A-202ENST00000393985 1148 ntAPPRIS P3 TSL 1 (best) BASIC21.06■□□□□ 0.96
HMGB1P09429 LY6E-209ENST00000521003 740 ntAPPRIS P2 TSL 2 BASIC21.06■□□□□ 0.96
HMGB1P09429 AP006284.1-202ENST00000527113 527 ntTSL 4 BASIC21.06■□□□□ 0.96
HMGB1P09429 AC004771.4-201ENST00000576752 474 ntTSL 5 BASIC21.06■□□□□ 0.96
HMGB1P09429 NDUFV2-AS1-203ENST00000608008 779 ntBASIC21.06■□□□□ 0.96
HMGB1P09429 TAF4B-201ENST00000269142 5260 ntAPPRIS P3 TSL 1 (best) BASIC21.06■□□□□ 0.96
HMGB1P09429 UBE2D2-202ENST00000398733 2702 ntAPPRIS P2 TSL 1 (best) BASIC21.06■□□□□ 0.96
HMGB1P09429 SPRED3-201ENST00000338502 4778 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
HMGB1P09429 GGT2-202ENST00000405188 1845 ntTSL 5 BASIC21.06■□□□□ 0.96
HMGB1P09429 SCARB1-208ENST00000544327 1812 ntTSL 5 BASIC21.06■□□□□ 0.96
HMGB1P09429 LINC00937-205ENST00000538304 2157 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
HMGB1P09429 AC104809.2-201ENST00000418218 2274 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
HMGB1P09429 AC242426.3-201ENST00000440377 1571 ntTSL 2 BASIC21.06■□□□□ 0.96
HMGB1P09429 APOA5-203ENST00000542499 1929 ntAPPRIS P1 TSL 5 BASIC21.06■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 29.5 ms