Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 NDUFA6-203ENST00000602404 1080 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
HOXC4P09017 AC243547.2-201ENST00000616257 234 ntTSL 3 BASIC17.39■□□□□ 0.37
HOXC4P09017 AC132872.3-201ENST00000620937 629 ntTSL 5 BASIC17.39■□□□□ 0.37
HOXC4P09017 LTV1-201ENST00000367576 1847 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
HOXC4P09017 SH3BP1-201ENST00000357436 2852 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
HOXC4P09017 CCDC34-201ENST00000317945 2109 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.37
HOXC4P09017 ACTN4-202ENST00000390009 2102 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
HOXC4P09017 SYN2-206ENST00000621198 2674 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
HOXC4P09017 SMARCD1-201ENST00000381513 3237 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
HOXC4P09017 MINPP1-201ENST00000371994 2183 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
HOXC4P09017 ABALON-201ENST00000629058 1903 ntBASIC17.39■□□□□ 0.37
HOXC4P09017 MARVELD3-202ENST00000299952 2214 ntAPPRIS ALT2 TSL 2 BASIC17.39■□□□□ 0.37
HOXC4P09017 FNBP1-201ENST00000355681 1977 ntTSL 2 BASIC17.39■□□□□ 0.37
HOXC4P09017 ARFIP2-203ENST00000423813 1430 ntTSL 2 BASIC17.38■□□□□ 0.37
HOXC4P09017 C16orf89-202ENST00000472572 1444 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
HOXC4P09017 GINS4-206ENST00000520710 2022 ntTSL 2 BASIC17.38■□□□□ 0.37
HOXC4P09017 AP1AR-202ENST00000309703 2337 ntAPPRIS ALT1 TSL 1 (best) BASIC17.38■□□□□ 0.37
HOXC4P09017 FDXR-217ENST00000582944 1766 ntTSL 2 BASIC17.38■□□□□ 0.37
HOXC4P09017 SENP6-201ENST00000327284 2700 ntTSL 2 BASIC17.38■□□□□ 0.37
HOXC4P09017 TLE3-201ENST00000317509 5207 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
HOXC4P09017 LRRC14-201ENST00000292524 5328 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
HOXC4P09017 DNAH14-205ENST00000366850 1103 ntTSL 5 BASIC17.38■□□□□ 0.37
HOXC4P09017 AL020989.1-201ENST00000422979 469 ntBASIC17.38■□□□□ 0.37
HOXC4P09017 AL391650.1-205ENST00000433939 579 ntAPPRIS P1 TSL 3 BASIC17.38■□□□□ 0.37
HOXC4P09017 OR7E14P-202ENST00000530490 1290 ntBASIC17.38■□□□□ 0.37
HOXC4P09017 TSPY4-205ENST00000640033 663 ntAPPRIS ALT2 TSL 5 BASIC17.38■□□□□ 0.37
HOXC4P09017 AC107918.4-202ENST00000641623 219 ntBASIC17.38■□□□□ 0.37
HOXC4P09017 SLC12A9-202ENST00000415287 1912 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
HOXC4P09017 KRT6C-201ENST00000252250 2289 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
HOXC4P09017 KRT6B-201ENST00000252252 2282 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
HOXC4P09017 TNKS2-201ENST00000371627 6157 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
HOXC4P09017 PC-208ENST00000529047 1607 ntTSL 3 BASIC17.38■□□□□ 0.37
HOXC4P09017 RNF139-201ENST00000303545 2637 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
HOXC4P09017 HARBI1-201ENST00000326737 1967 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
HOXC4P09017 TMEM216-203ENST00000515837 1958 ntAPPRIS P2 TSL 2 BASIC17.38■□□□□ 0.37
HOXC4P09017 IL9RP2-201ENST00000423948 1312 ntBASIC17.38■□□□□ 0.37
HOXC4P09017 GGNBP2-210ENST00000611219 2315 ntTSL 2 BASIC17.38■□□□□ 0.37
HOXC4P09017 NFIB-208ENST00000397581 3318 ntTSL 5 BASIC17.38■□□□□ 0.37
HOXC4P09017 SWSAP1-201ENST00000312423 1684 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
HOXC4P09017 SLC39A5-201ENST00000266980 2031 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
HOXC4P09017 PPP1R7-201ENST00000234038 2386 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
HOXC4P09017 SNAP47-201ENST00000315781 2367 ntAPPRIS P3 TSL 1 (best) BASIC17.38■□□□□ 0.37
HOXC4P09017 GULP1-206ENST00000409830 1376 ntAPPRIS P3 TSL 1 (best) BASIC17.38■□□□□ 0.37
HOXC4P09017 DUS1L-201ENST00000306796 2068 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
HOXC4P09017 TCIRG1-213ENST00000532635 2457 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
HOXC4P09017 MFGE8-202ENST00000268151 1752 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
HOXC4P09017 SIRPAP1-201ENST00000448467 1770 ntBASIC17.38■□□□□ 0.37
HOXC4P09017 SCHIP1-205ENST00000482804 1799 ntTSL 5 BASIC17.38■□□□□ 0.37
HOXC4P09017 RAB39A-201ENST00000320578 1830 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
HOXC4P09017 SLC16A5-203ENST00000538213 1842 ntAPPRIS ALT2 TSL 2 BASIC17.37■□□□□ 0.37
HOXC4P09017 PLK1-201ENST00000300093 2227 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
HOXC4P09017 CD82-201ENST00000227155 2289 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
HOXC4P09017 CPAMD8-202ENST00000388925 5355 ntTSL 5 BASIC17.37■□□□□ 0.37
HOXC4P09017 ADAD1-203ENST00000388725 1918 ntTSL 2 BASIC17.37■□□□□ 0.37
HOXC4P09017 KLHL33-202ENST00000636854 2394 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.37
HOXC4P09017 RAVER2-201ENST00000294428 4398 ntAPPRIS ALT2 TSL 5 BASIC17.37■□□□□ 0.37
HOXC4P09017 KMT2B-201ENST00000420124 8469 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
HOXC4P09017 TBKBP1-204ENST00000622396 2010 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
HOXC4P09017 MTA1-207ENST00000435036 2888 ntTSL 5 BASIC17.37■□□□□ 0.37
HOXC4P09017 AC003669.1-201ENST00000334569 611 ntBASIC17.37■□□□□ 0.37
HOXC4P09017 CELA2A-201ENST00000359621 919 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
HOXC4P09017 HMGN1-203ENST00000380748 829 ntTSL 3 BASIC17.37■□□□□ 0.37
HOXC4P09017 AL022342.1-201ENST00000400363 863 ntBASIC17.37■□□□□ 0.37
HOXC4P09017 LAGE3P1-201ENST00000425356 484 ntBASIC17.37■□□□□ 0.37
HOXC4P09017 AC005104.2-201ENST00000427818 678 ntBASIC17.37■□□□□ 0.37
HOXC4P09017 RPS2P1-201ENST00000434010 821 ntBASIC17.37■□□□□ 0.37
HOXC4P09017 NKTR-203ENST00000442970 646 ntTSL 2 BASIC17.37■□□□□ 0.37
HOXC4P09017 TCTN1-208ENST00000471804 718 ntTSL 3 BASIC17.37■□□□□ 0.37
HOXC4P09017 HOXB-AS4-202ENST00000480386 566 ntTSL 4 BASIC17.37■□□□□ 0.37
HOXC4P09017 AC034213.1-201ENST00000507681 806 ntTSL 3 BASIC17.37■□□□□ 0.37
HOXC4P09017 C1QB-203ENST00000509305 1254 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
HOXC4P09017 BLOC1S6-214ENST00000567461 1052 ntTSL 2 BASIC17.37■□□□□ 0.37
HOXC4P09017 LITAF-211ENST00000572255 516 ntTSL 4 BASIC17.37■□□□□ 0.37
HOXC4P09017 LITAF-215ENST00000574763 717 ntAPPRIS P1 TSL 3 BASIC17.37■□□□□ 0.37
HOXC4P09017 AL512343.2-201ENST00000609423 490 ntTSL 2 BASIC17.37■□□□□ 0.37
HOXC4P09017 MIR7706-201ENST00000613747 67 ntBASIC17.37■□□□□ 0.37
HOXC4P09017 GRAP2-202ENST00000407075 1304 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
HOXC4P09017 HNRNPDL-210ENST00000630827 1318 ntAPPRIS ALT2 TSL 5 BASIC17.37■□□□□ 0.37
HOXC4P09017 AL590648.2-201ENST00000427949 2225 ntTSL 2 BASIC17.37■□□□□ 0.37
HOXC4P09017 AC132938.5-201ENST00000624980 1813 ntBASIC17.37■□□□□ 0.37
HOXC4P09017 BHLHE22-201ENST00000321870 3262 ntAPPRIS P1 BASIC17.37■□□□□ 0.37
HOXC4P09017 SLC22A17-204ENST00000397267 2455 ntAPPRIS P4 TSL 5 BASIC17.37■□□□□ 0.37
HOXC4P09017 NAA60-201ENST00000360862 2522 ntTSL 2 BASIC17.37■□□□□ 0.37
HOXC4P09017 CRHR2-207ENST00000471646 2530 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
HOXC4P09017 FUT8-AS1-201ENST00000621019 1521 ntBASIC17.37■□□□□ 0.37
HOXC4P09017 AC138356.1-201ENST00000330539 2086 ntTSL 2 BASIC17.36■□□□□ 0.37
HOXC4P09017 MARCH8-201ENST00000319836 5272 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
HOXC4P09017 UPF1-201ENST00000262803 5348 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
HOXC4P09017 BID-205ENST00000399774 2167 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
HOXC4P09017 DCST1-204ENST00000423025 2199 ntAPPRIS ALT2 TSL 2 BASIC17.36■□□□□ 0.37
HOXC4P09017 CCDC17-209ENST00000528266 2181 ntAPPRIS P3 TSL 2 BASIC17.36■□□□□ 0.37
HOXC4P09017 MTMR12-201ENST00000264934 2215 ntTSL 2 BASIC17.36■□□□□ 0.37
HOXC4P09017 AC090206.1-201ENST00000615734 1678 ntTSL 5 BASIC17.36■□□□□ 0.37
HOXC4P09017 VAV1-201ENST00000304076 2825 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
HOXC4P09017 DTNB-209ENST00000407038 2294 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
HOXC4P09017 MCC-208ENST00000514701 2855 ntTSL 2 BASIC17.36■□□□□ 0.37
HOXC4P09017 TOM1L2-207ENST00000535933 1748 ntTSL 2 BASIC17.36■□□□□ 0.37
HOXC4P09017 TCTN1-225ENST00000551590 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
HOXC4P09017 LYNX1-204ENST00000614491 4708 ntAPPRIS P1 TSL 2 BASIC17.36■□□□□ 0.37
HOXC4P09017 RRP7BP-201ENST00000357802 2375 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 33.2 ms