Protein–RNA interactions for Protein: O75112

LDB3, LIM domain-binding protein 3, humanhuman

Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3O75112 ABCD4-228ENST00000557588 763 ntTSL 3 BASIC16.84■□□□□ 0.29
LDB3O75112 ANAPC11-204ENST00000571024 668 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
LDB3O75112 HOXB8-203ENST00000576562 743 ntAPPRIS ALT1 TSL 2 BASIC16.84■□□□□ 0.29
LDB3O75112 ANAPC11-218ENST00000582222 523 ntTSL 2 BASIC16.84■□□□□ 0.29
LDB3O75112 AC011498.3-201ENST00000590159 569 ntTSL 4 BASIC16.84■□□□□ 0.29
LDB3O75112 MIMT1-202ENST00000599641 1290 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
LDB3O75112 AC092119.3-201ENST00000612618 583 ntBASIC16.84■□□□□ 0.29
LDB3O75112 NPAP1P7-201ENST00000613027 823 ntBASIC16.84■□□□□ 0.29
LDB3O75112 TMPRSS9-205ENST00000613480 2568 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
LDB3O75112 IDS-202ENST00000370441 1399 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
LDB3O75112 KRT8P47-201ENST00000604727 1398 ntBASIC16.84■□□□□ 0.29
LDB3O75112 UNKL-202ENST00000301712 1431 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
LDB3O75112 PLCG1-202ENST00000373271 7395 ntAPPRIS ALT1 TSL 1 (best) BASIC16.84■□□□□ 0.29
LDB3O75112 LRRC29-201ENST00000393992 1468 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
LDB3O75112 PAX4-204ENST00000463946 1613 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
LDB3O75112 SEPT2-208ENST00000407971 3267 ntTSL 5 BASIC16.84■□□□□ 0.29
LDB3O75112 CEACAM16-202ENST00000587331 1692 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
LDB3O75112 NDUFS7-210ENST00000539480 1743 ntTSL 2 BASIC16.84■□□□□ 0.29
LDB3O75112 LEXM-201ENST00000358193 1777 ntAPPRIS P3 TSL 1 (best) BASIC16.84■□□□□ 0.29
LDB3O75112 MAEA-219ENST00000514708 1945 ntTSL 2 BASIC16.84■□□□□ 0.29
LDB3O75112 DTNB-209ENST00000407038 2294 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
LDB3O75112 ACOXL-205ENST00000439055 2373 ntTSL 2 BASIC16.84■□□□□ 0.29
LDB3O75112 CABIN1-202ENST00000337989 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
LDB3O75112 ZNF12-204ENST00000405858 5051 ntAPPRIS P4 TSL 1 (best) BASIC16.84■□□□□ 0.29
LDB3O75112 PRSS36-201ENST00000268281 2840 ntAPPRIS P3 TSL 1 (best) BASIC16.83■□□□□ 0.29
LDB3O75112 B3GALNT1-202ENST00000392779 3221 ntAPPRIS P1 TSL 2 BASIC16.83■□□□□ 0.29
LDB3O75112 UBR3-203ENST00000418381 7951 ntAPPRIS P1 TSL 5 BASIC16.83■□□□□ 0.29
LDB3O75112 FST-201ENST00000256759 2519 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
LDB3O75112 CNPY2-201ENST00000273308 1214 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
LDB3O75112 MED30-201ENST00000297347 985 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
LDB3O75112 PIGQ-203ENST00000321878 3006 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
LDB3O75112 USF2-202ENST00000343550 1523 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
LDB3O75112 WDR88-202ENST00000361680 1835 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
LDB3O75112 C1QC-203ENST00000374640 1163 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
LDB3O75112 ZDHHC4-205ENST00000396713 1552 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
LDB3O75112 FYTTD1-205ENST00000424384 1758 ntTSL 2 BASIC16.83■□□□□ 0.28
LDB3O75112 AL845331.1-201ENST00000424978 1190 ntBASIC16.83■□□□□ 0.28
LDB3O75112 SIGIRR-203ENST00000431843 1720 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
LDB3O75112 AC010655.4-201ENST00000462662 707 ntTSL 4 BASIC16.83■□□□□ 0.28
LDB3O75112 CDK10-208ENST00000505473 1424 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
LDB3O75112 AC051649.1-201ENST00000509204 330 ntTSL 3 BASIC16.83■□□□□ 0.28
LDB3O75112 TPSP2-201ENST00000561760 610 ntBASIC16.83■□□□□ 0.28
LDB3O75112 LAT-211ENST00000566177 786 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
LDB3O75112 AC140504.1-202ENST00000568222 652 ntTSL 5 BASIC16.83■□□□□ 0.28
LDB3O75112 ATPAF1-214ENST00000576409 4158 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
LDB3O75112 AC011840.4-201ENST00000578471 627 ntBASIC16.83■□□□□ 0.28
LDB3O75112 KRT18P55-202ENST00000578578 1546 ntBASIC16.83■□□□□ 0.28
LDB3O75112 TBXA2R-204ENST00000589966 1814 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
LDB3O75112 AC008764.6-201ENST00000595909 2069 ntBASIC16.83■□□□□ 0.28
LDB3O75112 HNF4A-208ENST00000609795 1192 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
LDB3O75112 HSPA4-205ENST00000617074 2358 ntTSL 5 BASIC16.83■□□□□ 0.28
LDB3O75112 ARID1B-203ENST00000350026 7962 ntAPPRIS P3 TSL 1 (best) BASIC16.83■□□□□ 0.28
LDB3O75112 SENP2-201ENST00000296257 5717 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
LDB3O75112 TMEM132A-201ENST00000005286 3480 ntAPPRIS P3 TSL 5 BASIC16.83■□□□□ 0.28
LDB3O75112 MAPKAP1-205ENST00000373503 3045 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
LDB3O75112 A4GALT-203ENST00000401850 2321 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
LDB3O75112 ARMC10-209ENST00000454559 2347 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
LDB3O75112 AC012317.2-201ENST00000623305 2251 ntBASIC16.82■□□□□ 0.28
LDB3O75112 BPGM-203ENST00000418040 1870 ntAPPRIS P1 TSL 5 BASIC16.82■□□□□ 0.28
LDB3O75112 TEFM-205ENST00000581216 1891 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
LDB3O75112 COA5-201ENST00000328709 1754 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
LDB3O75112 LRRC61-201ENST00000323078 1684 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
LDB3O75112 KLK5-201ENST00000336334 1563 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
LDB3O75112 POLD4-205ENST00000529704 1486 ntTSL 2 BASIC16.82■□□□□ 0.28
LDB3O75112 LRRC32-202ENST00000404995 2656 ntAPPRIS P1 TSL 5 BASIC16.82■□□□□ 0.28
LDB3O75112 PRKRA-203ENST00000432031 1344 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
LDB3O75112 TAX1BP3-202ENST00000611779 1302 ntTSL 2 BASIC16.82■□□□□ 0.28
LDB3O75112 EFCAB2-203ENST00000366523 1233 ntAPPRIS P1 TSL 3 BASIC16.82■□□□□ 0.28
LDB3O75112 SPEG-204ENST00000396689 1274 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
LDB3O75112 LINGO1-AS2-201ENST00000557799 663 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
LDB3O75112 NUTF2-205ENST00000568396 1179 ntAPPRIS P1 TSL 3 BASIC16.82■□□□□ 0.28
LDB3O75112 MCRIP1-206ENST00000573478 1123 ntTSL 2 BASIC16.82■□□□□ 0.28
LDB3O75112 CHRNB1-207ENST00000575379 1095 ntTSL 2 BASIC16.82■□□□□ 0.28
LDB3O75112 MIR3180-1-201ENST00000580374 94 ntBASIC16.82■□□□□ 0.28
LDB3O75112 MIR3180-3-201ENST00000584616 94 ntBASIC16.82■□□□□ 0.28
LDB3O75112 ECSIT-207ENST00000588998 818 ntTSL 3 BASIC16.82■□□□□ 0.28
LDB3O75112 IL11-204ENST00000590625 1028 ntTSL 2 BASIC16.82■□□□□ 0.28
LDB3O75112 H2BFWT-202ENST00000611083 528 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
LDB3O75112 Metazoa_SRP.104-201ENST00000622099 280 ntBASIC16.82■□□□□ 0.28
LDB3O75112 C16orf45-201ENST00000300006 2404 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
LDB3O75112 RNFT2-204ENST00000407967 2415 ntTSL 5 BASIC16.82■□□□□ 0.28
LDB3O75112 IL17RC-206ENST00000416074 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
LDB3O75112 KBTBD11-201ENST00000320248 6710 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
LDB3O75112 LINC00683-201ENST00000578803 2221 ntTSL 2 BASIC16.82■□□□□ 0.28
LDB3O75112 FXYD6-204ENST00000526014 2171 ntAPPRIS P2 TSL 1 (best) BASIC16.82■□□□□ 0.28
LDB3O75112 CCDC177-201ENST00000599174 4131 ntAPPRIS P1 TSL 3 BASIC16.82■□□□□ 0.28
LDB3O75112 SMOC1-201ENST00000361956 2040 ntAPPRIS ALT1 TSL 1 (best) BASIC16.82■□□□□ 0.28
LDB3O75112 AC008969.1-203ENST00000313957 1897 ntTSL 2 BASIC16.82■□□□□ 0.28
LDB3O75112 RIN1-201ENST00000311320 2693 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
LDB3O75112 AC055811.2-201ENST00000427497 1693 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
LDB3O75112 OPRK1-202ENST00000520287 1602 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
LDB3O75112 PROK2-202ENST00000353065 1549 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
LDB3O75112 DTX2-211ENST00000446600 2281 ntTSL 2 BASIC16.81■□□□□ 0.28
LDB3O75112 AC068880.1-201ENST00000507289 2297 ntBASIC16.81■□□□□ 0.28
LDB3O75112 YIF1B-204ENST00000392124 1404 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
LDB3O75112 BECN1-201ENST00000361523 2112 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
LDB3O75112 ZNF487-202ENST00000437590 2111 ntTSL 2 BASIC16.81■□□□□ 0.28
LDB3O75112 SHE-201ENST00000304760 6243 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
LDB3O75112 SDHA-204ENST00000504309 2067 ntTSL 5 BASIC16.81■□□□□ 0.28
LDB3O75112 DTNBP1-203ENST00000355917 1359 ntTSL 5 BASIC16.81■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 28.4 ms