Protein–RNA interactions for Protein: A0A1B0GU29

SMIM28, Small integral membrane protein 28, humanhuman

Predictions only

Length 152 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMIM28A0A1B0GU29 MACROD2-201ENST00000217246 4994 ntAPPRIS P1 TSL 2 BASIC19.13■□□□□ 0.65
SMIM28A0A1B0GU29 LTV1-201ENST00000367576 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
SMIM28A0A1B0GU29 NOTCH2NL-201ENST00000362074 1874 ntAPPRIS P2 TSL 1 (best) BASIC19.13■□□□□ 0.65
SMIM28A0A1B0GU29 GFER-201ENST00000248114 2345 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
SMIM28A0A1B0GU29 PTGER3-201ENST00000306666 2333 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
SMIM28A0A1B0GU29 GGT3P-201ENST00000412448 2340 ntTSL 2 BASIC19.13■□□□□ 0.65
SMIM28A0A1B0GU29 MMD2-202ENST00000404774 2415 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
SMIM28A0A1B0GU29 WRNIP1-202ENST00000380769 3239 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
SMIM28A0A1B0GU29 PMEPA1-202ENST00000341744 4845 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
SMIM28A0A1B0GU29 RASGRP1-201ENST00000310803 5023 ntAPPRIS P2 TSL 1 (best) BASIC19.12■□□□□ 0.65
SMIM28A0A1B0GU29 RASGRP1-204ENST00000539159 5021 ntAPPRIS ALT1 TSL 5 BASIC19.12■□□□□ 0.65
SMIM28A0A1B0GU29 ECEL1-201ENST00000304546 2865 ntAPPRIS P3 TSL 1 (best) BASIC19.12■□□□□ 0.65
SMIM28A0A1B0GU29 RXRB-202ENST00000374685 2846 ntAPPRIS ALT1 TSL 1 (best) BASIC19.12■□□□□ 0.65
SMIM28A0A1B0GU29 SLC39A4-201ENST00000276833 2297 ntTSL 2 BASIC19.12■□□□□ 0.65
SMIM28A0A1B0GU29 MARVELD3-202ENST00000299952 2214 ntAPPRIS ALT2 TSL 2 BASIC19.12■□□□□ 0.65
SMIM28A0A1B0GU29 DUS1L-201ENST00000306796 2068 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
SMIM28A0A1B0GU29 KLHDC3-201ENST00000244670 1903 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
SMIM28A0A1B0GU29 AL356309.3-201ENST00000624132 1934 ntBASIC19.12■□□□□ 0.65
SMIM28A0A1B0GU29 ABALON-201ENST00000629058 1903 ntBASIC19.12■□□□□ 0.65
SMIM28A0A1B0GU29 FDXR-217ENST00000582944 1766 ntTSL 2 BASIC19.12■□□□□ 0.65
SMIM28A0A1B0GU29 PMPCAP1-201ENST00000508114 1576 ntBASIC19.12■□□□□ 0.65
SMIM28A0A1B0GU29 FLT3LG-204ENST00000595510 1301 ntTSL 5 BASIC19.12■□□□□ 0.65
SMIM28A0A1B0GU29 UPK3A-202ENST00000396082 627 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
SMIM28A0A1B0GU29 RBCK1-206ENST00000400247 790 ntTSL 2 BASIC19.12■□□□□ 0.65
SMIM28A0A1B0GU29 CCDC74A-202ENST00000409856 1298 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
SMIM28A0A1B0GU29 AC103564.2-201ENST00000432853 1299 ntBASIC19.12■□□□□ 0.65
SMIM28A0A1B0GU29 C1orf109-203ENST00000464085 919 ntAPPRIS P1 TSL 2 BASIC19.12■□□□□ 0.65
SMIM28A0A1B0GU29 ORAOV1-210ENST00000539414 817 ntAPPRIS ALT1 TSL 2 BASIC19.12■□□□□ 0.65
SMIM28A0A1B0GU29 AL162171.1-201ENST00000556328 718 ntTSL 3 BASIC19.12■□□□□ 0.65
SMIM28A0A1B0GU29 SPAG7-207ENST00000575142 1094 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
SMIM28A0A1B0GU29 MCRIP1-211ENST00000576679 751 ntTSL 2 BASIC19.12■□□□□ 0.65
SMIM28A0A1B0GU29 RNF146-203ENST00000368314 2369 ntAPPRIS ALT1 TSL 2 BASIC19.12■□□□□ 0.65
SMIM28A0A1B0GU29 ARHGAP28-203ENST00000383472 2295 ntAPPRIS ALT2 TSL 5 BASIC19.12■□□□□ 0.65
SMIM28A0A1B0GU29 SLC5A10-203ENST00000395645 2069 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
SMIM28A0A1B0GU29 MIS18BP1-212ENST00000627697 1950 ntTSL 5 BASIC19.12■□□□□ 0.65
SMIM28A0A1B0GU29 CD14-201ENST00000302014 1886 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
SMIM28A0A1B0GU29 RNPS1-205ENST00000561718 1806 ntTSL 3 BASIC19.11■□□□□ 0.65
SMIM28A0A1B0GU29 SIRPAP1-201ENST00000448467 1770 ntBASIC19.11■□□□□ 0.65
SMIM28A0A1B0GU29 SPDYE5-203ENST00000625065 1700 ntAPPRIS P2 TSL 5 BASIC19.11■□□□□ 0.65
SMIM28A0A1B0GU29 TBC1D2B-202ENST00000409931 6086 ntAPPRIS P3 TSL 1 (best) BASIC19.11■□□□□ 0.65
SMIM28A0A1B0GU29 LZTS1-203ENST00000522290 1614 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
SMIM28A0A1B0GU29 FCER2-202ENST00000360067 1482 ntAPPRIS ALT2 TSL 5 BASIC19.11■□□□□ 0.65
SMIM28A0A1B0GU29 TBL1Y-203ENST00000383032 2407 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
SMIM28A0A1B0GU29 C16orf70-208ENST00000569600 1353 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
SMIM28A0A1B0GU29 OGG1-203ENST00000302036 2220 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
SMIM28A0A1B0GU29 PVR-204ENST00000406449 1344 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
SMIM28A0A1B0GU29 AL031284.1-201ENST00000419297 478 ntBASIC19.11■□□□□ 0.65
SMIM28A0A1B0GU29 AC007834.1-201ENST00000446473 728 ntTSL 3 BASIC19.11■□□□□ 0.65
SMIM28A0A1B0GU29 LINC01615-202ENST00000449466 603 ntTSL 3 BASIC19.11■□□□□ 0.65
SMIM28A0A1B0GU29 AC073648.2-201ENST00000510116 352 ntBASIC19.11■□□□□ 0.65
SMIM28A0A1B0GU29 AC021739.2-201ENST00000558375 964 ntTSL 5 BASIC19.11■□□□□ 0.65
SMIM28A0A1B0GU29 AC021087.4-201ENST00000563761 564 ntBASIC19.11■□□□□ 0.65
SMIM28A0A1B0GU29 MAP1LC3B-207ENST00000565788 625 ntTSL 2 BASIC19.11■□□□□ 0.65
SMIM28A0A1B0GU29 AP001005.1-201ENST00000571755 1248 ntBASIC19.11■□□□□ 0.65
SMIM28A0A1B0GU29 PAM16-208ENST00000573553 722 ntTSL 2 BASIC19.11■□□□□ 0.65
SMIM28A0A1B0GU29 MUC1-224ENST00000611577 1023 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
SMIM28A0A1B0GU29 ANO2-212ENST00000612575 1087 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
SMIM28A0A1B0GU29 LCE1E-203ENST00000619588 267 ntAPPRIS ALT2 TSL 5 BASIC19.11■□□□□ 0.65
SMIM28A0A1B0GU29 AC132872.3-201ENST00000620937 629 ntTSL 5 BASIC19.11■□□□□ 0.65
SMIM28A0A1B0GU29 CHPF-203ENST00000535926 2634 ntTSL 2 BASIC19.11■□□□□ 0.65
SMIM28A0A1B0GU29 FAM222A-202ENST00000538780 3294 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
SMIM28A0A1B0GU29 SEMA7A-203ENST00000543145 2304 ntTSL 2 BASIC19.11■□□□□ 0.65
SMIM28A0A1B0GU29 CCDC115-201ENST00000259229 1646 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
SMIM28A0A1B0GU29 DCAF8-218ENST00000610139 1607 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
SMIM28A0A1B0GU29 KRT18P55-202ENST00000578578 1546 ntBASIC19.1■□□□□ 0.65
SMIM28A0A1B0GU29 RPL13P5-202ENST00000412023 1438 ntTSL 2 BASIC19.1■□□□□ 0.65
SMIM28A0A1B0GU29 CRTC3-208ENST00000560098 1421 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
SMIM28A0A1B0GU29 ATRIP-203ENST00000357105 2403 ntTSL 2 BASIC19.1■□□□□ 0.65
SMIM28A0A1B0GU29 UVSSA-207ENST00000511216 2927 ntAPPRIS P2 TSL 1 (best) BASIC19.1■□□□□ 0.65
SMIM28A0A1B0GU29 AC138028.4-201ENST00000564984 1845 ntBASIC19.1■□□□□ 0.65
SMIM28A0A1B0GU29 FAM90A1-201ENST00000307435 2342 ntAPPRIS P1 TSL 2 BASIC19.1■□□□□ 0.65
SMIM28A0A1B0GU29 FBXO31-201ENST00000311635 5934 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
SMIM28A0A1B0GU29 NANS-201ENST00000210444 1170 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
SMIM28A0A1B0GU29 VKORC1-201ENST00000300851 876 ntTSL 2 BASIC19.1■□□□□ 0.65
SMIM28A0A1B0GU29 SMOX-204ENST00000346595 982 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
SMIM28A0A1B0GU29 ART5-201ENST00000359918 1241 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
SMIM28A0A1B0GU29 SZT2-202ENST00000372450 1191 ntAPPRIS ALT2 TSL 1 (best) BASIC19.1■□□□□ 0.65
SMIM28A0A1B0GU29 DRAP1-202ENST00000376991 819 ntTSL 5 BASIC19.1■□□□□ 0.65
SMIM28A0A1B0GU29 COLEC11-207ENST00000404205 1062 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
SMIM28A0A1B0GU29 HNRNPDP1-201ENST00000439535 754 ntBASIC19.1■□□□□ 0.65
SMIM28A0A1B0GU29 NCAM1-AS1-202ENST00000533638 618 ntTSL 4 BASIC19.1■□□□□ 0.65
SMIM28A0A1B0GU29 MTHFSD-203ENST00000543303 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC19.1■□□□□ 0.65
SMIM28A0A1B0GU29 AC004801.5-202ENST00000546804 530 ntTSL 4 BASIC19.1■□□□□ 0.65
SMIM28A0A1B0GU29 AC008105.3-202ENST00000585471 1077 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
SMIM28A0A1B0GU29 NKAPP1-205ENST00000585790 367 ntBASIC19.1■□□□□ 0.65
SMIM28A0A1B0GU29 MTHFSD-220ENST00000634347 1207 ntAPPRIS P3 TSL 1 (best) BASIC19.1■□□□□ 0.65
SMIM28A0A1B0GU29 NSUN5P2-205ENST00000602348 1776 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
SMIM28A0A1B0GU29 RNFT2-202ENST00000319176 2180 ntTSL 5 BASIC19.1■□□□□ 0.65
SMIM28A0A1B0GU29 TFEB-203ENST00000358871 2188 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
SMIM28A0A1B0GU29 DCST1-204ENST00000423025 2199 ntAPPRIS ALT2 TSL 2 BASIC19.1■□□□□ 0.65
SMIM28A0A1B0GU29 LYRM9-203ENST00000460380 2196 ntTSL 2 BASIC19.1■□□□□ 0.65
SMIM28A0A1B0GU29 ENTPD2-202ENST00000355097 2095 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
SMIM28A0A1B0GU29 GINS4-206ENST00000520710 2022 ntTSL 2 BASIC19.1■□□□□ 0.65
SMIM28A0A1B0GU29 SMPD3-201ENST00000219334 5453 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
SMIM28A0A1B0GU29 ANXA6-201ENST00000354546 2593 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
SMIM28A0A1B0GU29 SYT15-201ENST00000374321 1369 ntAPPRIS P4 TSL 2 BASIC19.09■□□□□ 0.65
SMIM28A0A1B0GU29 IDUA-210ENST00000514224 2130 ntTSL 2 BASIC19.09■□□□□ 0.65
SMIM28A0A1B0GU29 RASEF-202ENST00000376447 5576 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
SMIM28A0A1B0GU29 MAPK9-201ENST00000343111 4369 ntTSL 5 BASIC19.09■□□□□ 0.65
SMIM28A0A1B0GU29 RNF2-201ENST00000367509 1677 ntTSL 2 BASIC19.09■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 80 ms