Protein–RNA interactions for Protein: Q9Y2N7

HIF3A, Hypoxia-inducible factor 3-alpha, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3AQ9Y2N7 LIN28AP1-201ENST00000429574 405 ntBASIC16.19■□□□□ 0.18
HIF3AQ9Y2N7 LINC01381-201ENST00000431650 466 ntTSL 3 BASIC16.19■□□□□ 0.18
HIF3AQ9Y2N7 TSPO2-203ENST00000470917 699 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
HIF3AQ9Y2N7 MNX1-AS1-201ENST00000480284 1041 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
HIF3AQ9Y2N7 RPS20-210ENST00000523936 899 ntTSL 2 BASIC16.19■□□□□ 0.18
HIF3AQ9Y2N7 AC010203.1-204ENST00000548782 407 ntBASIC16.19■□□□□ 0.18
HIF3AQ9Y2N7 CDKN2A-213ENST00000579122 666 ntTSL 3 BASIC16.19■□□□□ 0.18
HIF3AQ9Y2N7 FAM104A-205ENST00000581110 512 ntTSL 2 BASIC16.19■□□□□ 0.18
HIF3AQ9Y2N7 TK1-205ENST00000590862 642 ntTSL 3 BASIC16.19■□□□□ 0.18
HIF3AQ9Y2N7 AC024563.2-201ENST00000603282 481 ntBASIC16.19■□□□□ 0.18
HIF3AQ9Y2N7 IGF2-205ENST00000416167 5585 ntAPPRIS P2 TSL 1 (best) BASIC16.19■□□□□ 0.18
HIF3AQ9Y2N7 PHRF1-202ENST00000413872 5224 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
HIF3AQ9Y2N7 LINC00683-201ENST00000578803 2221 ntTSL 2 BASIC16.19■□□□□ 0.18
HIF3AQ9Y2N7 CTSB-204ENST00000453527 2011 ntAPPRIS P1 TSL 2 BASIC16.19■□□□□ 0.18
HIF3AQ9Y2N7 KDM6A-212ENST00000543216 5655 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
HIF3AQ9Y2N7 C17orf62-202ENST00000342572 1849 ntTSL 2 BASIC16.19■□□□□ 0.18
HIF3AQ9Y2N7 PSRC1-204ENST00000369909 1742 ntAPPRIS P3 TSL 1 (best) BASIC16.19■□□□□ 0.18
HIF3AQ9Y2N7 SPDYE5-203ENST00000625065 1700 ntAPPRIS P2 TSL 5 BASIC16.19■□□□□ 0.18
HIF3AQ9Y2N7 ZNF133-212ENST00000622607 2660 ntAPPRIS ALT2 TSL 4 BASIC16.19■□□□□ 0.18
HIF3AQ9Y2N7 UBL3-201ENST00000380680 4384 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
HIF3AQ9Y2N7 COL4A2-201ENST00000360467 6281 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
HIF3AQ9Y2N7 PGM5-202ENST00000396396 3338 ntAPPRIS P1 TSL 2 BASIC16.19■□□□□ 0.18
HIF3AQ9Y2N7 KIF25-AS1-201ENST00000414364 1420 ntTSL 2 BASIC16.19■□□□□ 0.18
HIF3AQ9Y2N7 SYTL3-201ENST00000297239 2292 ntAPPRIS ALT1 TSL 1 (best) BASIC16.19■□□□□ 0.18
HIF3AQ9Y2N7 RTBDN-201ENST00000322912 1328 ntAPPRIS P3 TSL 1 (best) BASIC16.19■□□□□ 0.18
HIF3AQ9Y2N7 LRCH2-202ENST00000538422 4868 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
HIF3AQ9Y2N7 KCNMA1-261ENST00000639486 8850 ntAPPRIS ALT2 TSL 5 BASIC16.18■□□□□ 0.18
HIF3AQ9Y2N7 ATXN2-201ENST00000377617 4702 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
HIF3AQ9Y2N7 MARK4-210ENST00000620044 2105 ntTSL 5 BASIC16.18■□□□□ 0.18
HIF3AQ9Y2N7 TCF7-204ENST00000395029 3330 ntAPPRIS ALT2 TSL 5 BASIC16.18■□□□□ 0.18
HIF3AQ9Y2N7 AC005498.3-201ENST00000596587 2045 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
HIF3AQ9Y2N7 ADSL-202ENST00000342312 1808 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
HIF3AQ9Y2N7 CHAC1-202ENST00000446533 1849 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
HIF3AQ9Y2N7 EXOSC5-201ENST00000221233 1118 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
HIF3AQ9Y2N7 ANKRD20A18P-201ENST00000359341 492 ntBASIC16.18■□□□□ 0.18
HIF3AQ9Y2N7 HES2-202ENST00000377836 507 ntTSL 2 BASIC16.18■□□□□ 0.18
HIF3AQ9Y2N7 SNCB-202ENST00000393693 1234 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
HIF3AQ9Y2N7 GXYLT1P3-201ENST00000453058 1193 ntBASIC16.18■□□□□ 0.18
HIF3AQ9Y2N7 COX11P1-201ENST00000489116 835 ntBASIC16.18■□□□□ 0.18
HIF3AQ9Y2N7 MYD88-211ENST00000495303 976 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
HIF3AQ9Y2N7 AL442663.3-201ENST00000554737 1000 ntTSL 3 BASIC16.18■□□□□ 0.18
HIF3AQ9Y2N7 MRPL52-210ENST00000555345 895 ntTSL 2 BASIC16.18■□□□□ 0.18
HIF3AQ9Y2N7 AC025259.3-201ENST00000564531 542 ntTSL 3 BASIC16.18■□□□□ 0.18
HIF3AQ9Y2N7 RPARP-AS1-206ENST00000596366 631 ntTSL 3 BASIC16.18■□□□□ 0.18
HIF3AQ9Y2N7 DEDD2-209ENST00000598727 1037 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
HIF3AQ9Y2N7 AC140113.3-201ENST00000605663 199 ntBASIC16.18■□□□□ 0.18
HIF3AQ9Y2N7 AC012306.2-201ENST00000609350 630 ntBASIC16.18■□□□□ 0.18
HIF3AQ9Y2N7 FBF1-205ENST00000586717 4825 ntAPPRIS ALT2 TSL 5 BASIC16.18■□□□□ 0.18
HIF3AQ9Y2N7 CACNA1H-206ENST00000565831 7815 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
HIF3AQ9Y2N7 SOCS3-201ENST00000330871 2734 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
HIF3AQ9Y2N7 NDUFS7-210ENST00000539480 1743 ntTSL 2 BASIC16.18■□□□□ 0.18
HIF3AQ9Y2N7 B4GALT2-202ENST00000356836 2629 ntAPPRIS P1 TSL 2 BASIC16.18■□□□□ 0.18
HIF3AQ9Y2N7 CRTC1-201ENST00000321949 2501 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
HIF3AQ9Y2N7 C1orf159-204ENST00000379339 2429 ntAPPRIS ALT2 TSL 2 BASIC16.18■□□□□ 0.18
HIF3AQ9Y2N7 TOP1MT-218ENST00000523676 1982 ntTSL 5 BASIC16.18■□□□□ 0.18
HIF3AQ9Y2N7 SDC1-203ENST00000403076 1523 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
HIF3AQ9Y2N7 AC008969.1-203ENST00000313957 1897 ntTSL 2 BASIC16.18■□□□□ 0.18
HIF3AQ9Y2N7 SNAP23-201ENST00000249647 2687 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
HIF3AQ9Y2N7 TMEM45B-201ENST00000281441 2234 ntAPPRIS P1 TSL 2 BASIC16.18■□□□□ 0.18
HIF3AQ9Y2N7 GOLGA6L2-204ENST00000567107 3030 ntAPPRIS P2 TSL 5 BASIC16.18■□□□□ 0.18
HIF3AQ9Y2N7 MORN1-203ENST00000378531 1798 ntAPPRIS P3 TSL 2 BASIC16.18■□□□□ 0.18
HIF3AQ9Y2N7 AC020916.1-201ENST00000587762 1774 ntBASIC16.18■□□□□ 0.18
HIF3AQ9Y2N7 CTSB-202ENST00000353047 3875 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
HIF3AQ9Y2N7 P2RY6-202ENST00000393590 2398 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
HIF3AQ9Y2N7 MXRA8-209ENST00000477278 2728 ntTSL 5 BASIC16.18■□□□□ 0.18
HIF3AQ9Y2N7 UQCC3-201ENST00000377953 1947 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
HIF3AQ9Y2N7 GOSR1-201ENST00000225724 6039 ntAPPRIS P3 TSL 1 (best) BASIC16.17■□□□□ 0.18
HIF3AQ9Y2N7 SLC22A7-201ENST00000372574 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
HIF3AQ9Y2N7 LGALS8-AS1-201ENST00000487567 1457 ntBASIC16.17■□□□□ 0.18
HIF3AQ9Y2N7 TBL3-205ENST00000568546 6803 ntAPPRIS P2 TSL 1 (best) BASIC16.17■□□□□ 0.18
HIF3AQ9Y2N7 NFIC-211ENST00000641145 8399 ntBASIC16.17■□□□□ 0.18
HIF3AQ9Y2N7 FKBP10-201ENST00000321562 2662 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
HIF3AQ9Y2N7 WNT5B-202ENST00000397196 2303 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
HIF3AQ9Y2N7 MIR4300HG-201ENST00000500502 1397 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
HIF3AQ9Y2N7 TMEM216-203ENST00000515837 1958 ntAPPRIS P2 TSL 2 BASIC16.17■□□□□ 0.18
HIF3AQ9Y2N7 MXRA8-202ENST00000342753 2231 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
HIF3AQ9Y2N7 CENPT-215ENST00000564817 1638 ntAPPRIS ALT2 TSL 5 BASIC16.17■□□□□ 0.18
HIF3AQ9Y2N7 GALNT14-202ENST00000349752 2733 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
HIF3AQ9Y2N7 ZBTB4-202ENST00000380599 5866 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
HIF3AQ9Y2N7 SLC8A3-203ENST00000357887 5259 ntTSL 5 BASIC16.17■□□□□ 0.18
HIF3AQ9Y2N7 SLC8A3-204ENST00000381269 5268 ntAPPRIS ALT1 TSL 1 (best) BASIC16.17■□□□□ 0.18
HIF3AQ9Y2N7 RHOC-204ENST00000369633 1295 ntAPPRIS P1 TSL 3 BASIC16.17■□□□□ 0.18
HIF3AQ9Y2N7 CFLAR-208ENST00000423241 2128 ntAPPRIS P3 TSL 1 (best) BASIC16.17■□□□□ 0.18
HIF3AQ9Y2N7 ATP5G1P1-201ENST00000448724 379 ntBASIC16.17■□□□□ 0.18
HIF3AQ9Y2N7 PAQR4-204ENST00000574988 869 ntTSL 2 BASIC16.17■□□□□ 0.18
HIF3AQ9Y2N7 AL136038.4-201ENST00000603606 1261 ntBASIC16.17■□□□□ 0.18
HIF3AQ9Y2N7 NDUFAB1-201ENST00000007516 717 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
HIF3AQ9Y2N7 ARFGAP2-229ENST00000627920 2613 ntTSL 2 BASIC16.17■□□□□ 0.18
HIF3AQ9Y2N7 MCF2L-203ENST00000375604 6445 ntAPPRIS P3 TSL 2 BASIC16.17■□□□□ 0.18
HIF3AQ9Y2N7 TCTEX1D1-201ENST00000282670 2001 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
HIF3AQ9Y2N7 TXNRD2-218ENST00000542719 2024 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
HIF3AQ9Y2N7 SLC47A2-202ENST00000350657 2285 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
HIF3AQ9Y2N7 APOLD1-202ENST00000356591 4646 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
HIF3AQ9Y2N7 AP003717.1-202ENST00000537019 1412 ntTSL 5 BASIC16.17■□□□□ 0.18
HIF3AQ9Y2N7 MAEA-219ENST00000514708 1945 ntTSL 2 BASIC16.17■□□□□ 0.18
HIF3AQ9Y2N7 CMTM3-214ENST00000567572 1934 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
HIF3AQ9Y2N7 KCNT1-202ENST00000371757 4717 ntAPPRIS P3 TSL 1 (best) BASIC16.17■□□□□ 0.18
HIF3AQ9Y2N7 CYP2D6-204ENST00000389970 1714 ntTSL 5 BASIC16.16■□□□□ 0.18
HIF3AQ9Y2N7 AC004832.3-202ENST00000439838 1470 ntAPPRIS P1 TSL 2 BASIC16.16■□□□□ 0.18
HIF3AQ9Y2N7 SLC22A1-203ENST00000457470 1452 ntTSL 5 BASIC16.16■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 22.9 ms