Protein–RNA interactions for Protein: Q96BQ3

TRIM43, Tripartite motif-containing protein 43, humanhuman

Predicted RBP Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM43Q96BQ3 NCKAP1-201ENST00000360982 4989 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
TRIM43Q96BQ3 RNF38-204ENST00000357058 5254 ntAPPRIS P1 TSL 5 BASIC19.34■□□□□ 0.69
TRIM43Q96BQ3 GMPPA-202ENST00000341142 1524 ntAPPRIS P1 TSL 5 BASIC19.34■□□□□ 0.69
TRIM43Q96BQ3 BID-204ENST00000399767 2129 ntTSL 2 BASIC19.34■□□□□ 0.69
TRIM43Q96BQ3 AIPL1-209ENST00000575265 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
TRIM43Q96BQ3 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC19.34■□□□□ 0.69
TRIM43Q96BQ3 NLRP6-201ENST00000312165 2679 ntAPPRIS P3 TSL 1 (best) BASIC19.34■□□□□ 0.69
TRIM43Q96BQ3 CHRNB2-205ENST00000637900 2390 ntAPPRIS ALT1 TSL 5 BASIC19.34■□□□□ 0.69
TRIM43Q96BQ3 NBL1-209ENST00000548815 1953 ntAPPRIS P3 TSL 3 BASIC19.33■□□□□ 0.69
TRIM43Q96BQ3 WNT10A-201ENST00000258411 2547 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
TRIM43Q96BQ3 SLC34A3-201ENST00000361134 2124 ntAPPRIS P1 TSL 2 BASIC19.33■□□□□ 0.69
TRIM43Q96BQ3 SCYL2-201ENST00000360820 5779 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
TRIM43Q96BQ3 PRLH-201ENST00000165524 264 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
TRIM43Q96BQ3 HIST1H3D-201ENST00000356476 411 ntAPPRIS P1 BASIC19.33■□□□□ 0.68
TRIM43Q96BQ3 AL451067.1-201ENST00000453111 394 ntTSL 2 BASIC19.33■□□□□ 0.68
TRIM43Q96BQ3 NDUFB2-202ENST00000460088 420 ntTSL 3 BASIC19.33■□□□□ 0.68
TRIM43Q96BQ3 RAD51D-205ENST00000460118 1064 ntTSL 5 BASIC19.33■□□□□ 0.68
TRIM43Q96BQ3 AP000892.1-201ENST00000504906 488 ntTSL 3 BASIC19.33■□□□□ 0.68
TRIM43Q96BQ3 DHRS4-205ENST00000558263 1089 ntTSL 5 BASIC19.33■□□□□ 0.68
TRIM43Q96BQ3 DHRS4L2-207ENST00000558753 556 ntTSL 2 BASIC19.33■□□□□ 0.68
TRIM43Q96BQ3 CHGA-202ENST00000334654 1474 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
TRIM43Q96BQ3 MARK2-211ENST00000513765 2671 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.68
TRIM43Q96BQ3 TMEM109-201ENST00000227525 2413 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
TRIM43Q96BQ3 TTBK1-202ENST00000304139 2449 ntTSL 5 BASIC19.33■□□□□ 0.68
TRIM43Q96BQ3 PRELID3B-201ENST00000355937 2626 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
TRIM43Q96BQ3 CCDC7-203ENST00000362006 2133 ntAPPRIS P2 TSL 1 (best) BASIC19.33■□□□□ 0.68
TRIM43Q96BQ3 SLC17A7-201ENST00000221485 2973 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
TRIM43Q96BQ3 PAQR9-201ENST00000340634 2452 ntAPPRIS P1 BASIC19.32■□□□□ 0.68
TRIM43Q96BQ3 C3orf18-203ENST00000426034 2486 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
TRIM43Q96BQ3 OSBPL5-208ENST00000478260 2653 ntTSL 2 BASIC19.32■□□□□ 0.68
TRIM43Q96BQ3 MAGEA3-203ENST00000598245 1762 ntAPPRIS P1 TSL 2 BASIC19.32■□□□□ 0.68
TRIM43Q96BQ3 MAGEA6-204ENST00000616035 1762 ntAPPRIS P1 TSL 5 BASIC19.32■□□□□ 0.68
TRIM43Q96BQ3 NSL1-203ENST00000366978 1344 ntTSL 2 BASIC19.32■□□□□ 0.68
TRIM43Q96BQ3 OGFOD2-207ENST00000536150 1956 ntTSL 2 BASIC19.32■□□□□ 0.68
TRIM43Q96BQ3 AL691447.2-201ENST00000454869 2162 ntTSL 2 BASIC19.32■□□□□ 0.68
TRIM43Q96BQ3 NDN-201ENST00000331837 1931 ntAPPRIS P1 BASIC19.32■□□□□ 0.68
TRIM43Q96BQ3 GTF2IRD2-207ENST00000625377 1910 ntTSL 5 BASIC19.32■□□□□ 0.68
TRIM43Q96BQ3 NEK7-201ENST00000367383 586 ntTSL 2 BASIC19.32■□□□□ 0.68
TRIM43Q96BQ3 ITM2B-201ENST00000378549 805 ntTSL 5 BASIC19.32■□□□□ 0.68
TRIM43Q96BQ3 PTCHD3P3-201ENST00000403073 906 ntBASIC19.32■□□□□ 0.68
TRIM43Q96BQ3 PUDP-206ENST00000540122 825 ntTSL 2 BASIC19.32■□□□□ 0.68
TRIM43Q96BQ3 UBE2Q2L-201ENST00000558195 498 ntAPPRIS P1 TSL 2 BASIC19.32■□□□□ 0.68
TRIM43Q96BQ3 AL390955.2-201ENST00000603032 514 ntBASIC19.32■□□□□ 0.68
TRIM43Q96BQ3 NFIB-212ENST00000622520 1274 ntTSL 5 BASIC19.32■□□□□ 0.68
TRIM43Q96BQ3 AF228730.6-201ENST00000641497 218 ntBASIC19.32■□□□□ 0.68
TRIM43Q96BQ3 AC084121.3-201ENST00000641716 218 ntBASIC19.32■□□□□ 0.68
TRIM43Q96BQ3 AC105233.6-201ENST00000642093 218 ntBASIC19.32■□□□□ 0.68
TRIM43Q96BQ3 CEACAM16-202ENST00000587331 1692 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
TRIM43Q96BQ3 GSEC-201ENST00000626810 2289 ntTSL 2 BASIC19.32■□□□□ 0.68
TRIM43Q96BQ3 DMKN-209ENST00000429837 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
TRIM43Q96BQ3 NUDC-201ENST00000321265 1800 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
TRIM43Q96BQ3 PRKG2-207ENST00000628926 2623 ntTSL 2 BASIC19.32■□□□□ 0.68
TRIM43Q96BQ3 TUBA3FP-202ENST00000422086 1974 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
TRIM43Q96BQ3 CHST1-201ENST00000308064 2718 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
TRIM43Q96BQ3 MGAT5B-209ENST00000569840 4492 ntAPPRIS ALT1 TSL 5 BASIC19.31■□□□□ 0.68
TRIM43Q96BQ3 C11orf80-214ENST00000532565 1948 ntAPPRIS ALT2 TSL 5 BASIC19.31■□□□□ 0.68
TRIM43Q96BQ3 MLST8-202ENST00000382450 1861 ntAPPRIS ALT1 TSL 2 BASIC19.31■□□□□ 0.68
TRIM43Q96BQ3 MLST8-215ENST00000564088 1861 ntAPPRIS P3 TSL 2 BASIC19.31■□□□□ 0.68
TRIM43Q96BQ3 SIGLEC14-201ENST00000360844 2035 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
TRIM43Q96BQ3 S100A2-206ENST00000497140 697 ntTSL 2 BASIC19.31■□□□□ 0.68
TRIM43Q96BQ3 AC069262.1-201ENST00000539058 672 ntBASIC19.31■□□□□ 0.68
TRIM43Q96BQ3 BRF1-219ENST00000551787 824 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
TRIM43Q96BQ3 PSME1-205ENST00000559123 1033 ntTSL 5 BASIC19.31■□□□□ 0.68
TRIM43Q96BQ3 AC023355.1-201ENST00000560323 752 ntTSL 3 BASIC19.31■□□□□ 0.68
TRIM43Q96BQ3 AC093520.2-201ENST00000561830 333 ntBASIC19.31■□□□□ 0.68
TRIM43Q96BQ3 TMEM88-202ENST00000574668 510 ntTSL 2 BASIC19.31■□□□□ 0.68
TRIM43Q96BQ3 AC022145.2-201ENST00000598203 171 ntBASIC19.31■□□□□ 0.68
TRIM43Q96BQ3 AL590235.2-202ENST00000602543 594 ntTSL 5 BASIC19.31■□□□□ 0.68
TRIM43Q96BQ3 AC110491.3-201ENST00000631985 460 ntTSL 2 BASIC19.31■□□□□ 0.68
TRIM43Q96BQ3 NAF1-202ENST00000422287 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
TRIM43Q96BQ3 PCGF6-201ENST00000337211 1950 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
TRIM43Q96BQ3 TSNAXIP1-202ENST00000415766 2338 ntAPPRIS ALT2 TSL 2 BASIC19.31■□□□□ 0.68
TRIM43Q96BQ3 NAGPA-AS1-202ENST00000632058 2265 ntTSL 2 BASIC19.31■□□□□ 0.68
TRIM43Q96BQ3 FAM110A-203ENST00000381939 1737 ntAPPRIS P1 TSL 3 BASIC19.31■□□□□ 0.68
TRIM43Q96BQ3 SAMD11-211ENST00000616125 2230 ntAPPRIS ALT2 TSL 5 BASIC19.31■□□□□ 0.68
TRIM43Q96BQ3 TULP1-201ENST00000229771 2162 ntAPPRIS P2 TSL 1 (best) BASIC19.3■□□□□ 0.68
TRIM43Q96BQ3 ESR2-204ENST00000353772 2454 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
TRIM43Q96BQ3 TEKT5-201ENST00000283025 1612 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
TRIM43Q96BQ3 NKIRAS1-202ENST00000412028 1605 ntAPPRIS ALT1 TSL 5 BASIC19.3■□□□□ 0.68
TRIM43Q96BQ3 EPHA6-202ENST00000470610 2058 ntTSL 2 BASIC19.3■□□□□ 0.68
TRIM43Q96BQ3 SZT2-202ENST00000372450 1191 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
TRIM43Q96BQ3 SIGLEC30P-201ENST00000455569 941 ntBASIC19.3■□□□□ 0.68
TRIM43Q96BQ3 FBXL21-206ENST00000495672 589 ntTSL 4 BASIC19.3■□□□□ 0.68
TRIM43Q96BQ3 AC190387.1-201ENST00000551683 408 ntBASIC19.3■□□□□ 0.68
TRIM43Q96BQ3 BLOC1S6-202ENST00000562384 494 ntTSL 4 BASIC19.3■□□□□ 0.68
TRIM43Q96BQ3 AC023141.13-201ENST00000604991 943 ntBASIC19.3■□□□□ 0.68
TRIM43Q96BQ3 LINC00628-201ENST00000628516 1289 ntBASIC19.3■□□□□ 0.68
TRIM43Q96BQ3 CLEC10A-204ENST00000571664 1442 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
TRIM43Q96BQ3 BCS1L-202ENST00000392109 1583 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
TRIM43Q96BQ3 BCS1L-204ENST00000392111 1584 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
TRIM43Q96BQ3 C11orf58-201ENST00000228136 2049 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
TRIM43Q96BQ3 AP001476.1-201ENST00000451618 2198 ntTSL 2 BASIC19.3■□□□□ 0.68
TRIM43Q96BQ3 ZDHHC5-204ENST00000527985 2817 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
TRIM43Q96BQ3 SNX27-204ENST00000458013 6403 ntAPPRIS ALT1 TSL 5 BASIC19.29■□□□□ 0.68
TRIM43Q96BQ3 TINAGL1-201ENST00000271064 2187 ntAPPRIS P3 TSL 1 (best) BASIC19.29■□□□□ 0.68
TRIM43Q96BQ3 YY1AP1-213ENST00000405763 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
TRIM43Q96BQ3 ASZ1-201ENST00000284629 1865 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
TRIM43Q96BQ3 GMCL1P1-201ENST00000463439 1581 ntBASIC19.29■□□□□ 0.68
TRIM43Q96BQ3 MRPL53-201ENST00000258105 1162 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
TRIM43Q96BQ3 RPS9-203ENST00000391752 772 ntAPPRIS P1 TSL 2 BASIC19.29■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 56.7 ms