Protein–RNA interactions for Protein: Q92889

ERCC4, DNA repair endonuclease XPF, humanhuman

Predicted RBP Predictions only

Length 916 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC4Q92889 SLC39A1-211ENST00000621013 2322 ntAPPRIS P1 TSL 2 BASIC20.32■□□□□ 0.84
ERCC4Q92889 CHAC1-202ENST00000446533 1849 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
ERCC4Q92889 ZFP3-201ENST00000318833 5206 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
ERCC4Q92889 CBSL-202ENST00000617706 2563 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
ERCC4Q92889 MOB3A-201ENST00000357066 3391 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
ERCC4Q92889 EFCAB14-201ENST00000371933 5767 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
ERCC4Q92889 MED4-202ENST00000378586 931 ntAPPRIS ALT2 TSL 2 BASIC20.32■□□□□ 0.84
ERCC4Q92889 AL365259.1-203ENST00000451660 707 ntTSL 3 BASIC20.32■□□□□ 0.84
ERCC4Q92889 CCNJL-205ENST00000519673 940 ntTSL 2 BASIC20.32■□□□□ 0.84
ERCC4Q92889 TMEM9B-203ENST00000528117 949 ntTSL 2 BASIC20.32■□□□□ 0.84
ERCC4Q92889 SLC39A2-203ENST00000554422 1259 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
ERCC4Q92889 RPS27A-211ENST00000639844 606 ntTSL 5 BASIC20.32■□□□□ 0.84
ERCC4Q92889 DNAJB2-201ENST00000336576 3176 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
ERCC4Q92889 CYP2W1-202ENST00000340150 2361 ntTSL 2 BASIC20.32■□□□□ 0.84
ERCC4Q92889 GAL3ST4-201ENST00000360039 2537 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
ERCC4Q92889 ARHGAP8-202ENST00000356099 1584 ntAPPRIS P3 TSL 1 (best) BASIC20.32■□□□□ 0.84
ERCC4Q92889 TSKS-201ENST00000246801 1883 ntAPPRIS P2 TSL 1 (best) BASIC20.32■□□□□ 0.84
ERCC4Q92889 AC013275.1-201ENST00000413602 2019 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
ERCC4Q92889 C18orf8-208ENST00000590868 2002 ntTSL 2 BASIC20.32■□□□□ 0.84
ERCC4Q92889 C6orf132-201ENST00000341865 6210 ntAPPRIS P2 TSL 5 BASIC20.32■□□□□ 0.84
ERCC4Q92889 LBHD1-210ENST00000532208 1508 ntAPPRIS P2 TSL 5 BASIC20.32■□□□□ 0.84
ERCC4Q92889 MVK-201ENST00000228510 1956 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
ERCC4Q92889 PEX14-201ENST00000356607 1985 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
ERCC4Q92889 ERLEC1-201ENST00000185150 2433 ntAPPRIS P3 TSL 1 (best) BASIC20.32■□□□□ 0.84
ERCC4Q92889 RPH3AL-222ENST00000618002 2578 ntAPPRIS P2 TSL 5 BASIC20.32■□□□□ 0.84
ERCC4Q92889 MMEL1-201ENST00000378412 2849 ntAPPRIS P1 TSL 2 BASIC20.31■□□□□ 0.84
ERCC4Q92889 SEMA3B-202ENST00000418576 1765 ntTSL 2 BASIC20.31■□□□□ 0.84
ERCC4Q92889 SCHIP1-205ENST00000482804 1799 ntTSL 5 BASIC20.31■□□□□ 0.84
ERCC4Q92889 WDR18-202ENST00000585809 1608 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
ERCC4Q92889 LUC7L-201ENST00000293872 1456 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
ERCC4Q92889 AC027031.2-201ENST00000521369 1318 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
ERCC4Q92889 ALDH3B1-206ENST00000615463 1300 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
ERCC4Q92889 C12orf56-207ENST00000543942 3242 ntAPPRIS P1 TSL 5 BASIC20.31■□□□□ 0.84
ERCC4Q92889 SPAG6-203ENST00000376624 2605 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
ERCC4Q92889 SSB-201ENST00000260956 1709 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
ERCC4Q92889 SAMD11-202ENST00000342066 2551 ntAPPRIS P2 TSL 5 BASIC20.31■□□□□ 0.84
ERCC4Q92889 SAMD11-217ENST00000622503 2557 ntAPPRIS ALT2 TSL 5 BASIC20.31■□□□□ 0.84
ERCC4Q92889 GALNT9-201ENST00000328957 2410 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
ERCC4Q92889 KIAA0895-208ENST00000440378 2441 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
ERCC4Q92889 GMDS-208ENST00000530927 1440 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
ERCC4Q92889 WNT5B-203ENST00000537031 1437 ntAPPRIS P1 TSL 2 BASIC20.31■□□□□ 0.84
ERCC4Q92889 ACD-203ENST00000602320 1408 ntAPPRIS ALT2 TSL 5 BASIC20.31■□□□□ 0.84
ERCC4Q92889 PIP5K1A-207ENST00000441902 2297 ntTSL 2 BASIC20.31■□□□□ 0.84
ERCC4Q92889 LTB-210ENST00000429299 897 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
ERCC4Q92889 RNF144A-AS1-205ENST00000439208 757 ntTSL 3 BASIC20.31■□□□□ 0.84
ERCC4Q92889 AC009947.2-201ENST00000444014 672 ntBASIC20.31■□□□□ 0.84
ERCC4Q92889 TAPBP-236ENST00000456592 817 ntTSL 5 BASIC20.31■□□□□ 0.84
ERCC4Q92889 AC134349.1-201ENST00000543969 385 ntTSL 3 BASIC20.31■□□□□ 0.84
ERCC4Q92889 TMEM220-AS1-201ENST00000579114 575 ntTSL 4 BASIC20.31■□□□□ 0.84
ERCC4Q92889 AC010947.1-201ENST00000623454 693 ntBASIC20.31■□□□□ 0.84
ERCC4Q92889 DCAF17-211ENST00000539783 5623 ntAPPRIS ALT2 TSL 5 BASIC20.31■□□□□ 0.84
ERCC4Q92889 LRFN3-201ENST00000246529 2513 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
ERCC4Q92889 PHKG1-205ENST00000452681 2226 ntTSL 2 BASIC20.31■□□□□ 0.84
ERCC4Q92889 NCF1B-201ENST00000423083 1516 ntTSL 2 BASIC20.31■□□□□ 0.84
ERCC4Q92889 MYB-205ENST00000367814 3302 ntAPPRIS P3 TSL 1 (best) BASIC20.31■□□□□ 0.84
ERCC4Q92889 PCGF3-201ENST00000362003 5685 ntAPPRIS P1 TSL 5 BASIC20.31■□□□□ 0.84
ERCC4Q92889 PDE9A-213ENST00000398236 1776 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
ERCC4Q92889 GALNT11-205ENST00000430044 2727 ntAPPRIS P1 TSL 5 BASIC20.31■□□□□ 0.84
ERCC4Q92889 GDF5-202ENST00000374372 2572 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
ERCC4Q92889 RASA2-202ENST00000452898 2562 ntAPPRIS ALT2 TSL 5 BASIC20.31■□□□□ 0.84
ERCC4Q92889 AC026954.2-202ENST00000575474 2571 ntAPPRIS P5 TSL 5 BASIC20.31■□□□□ 0.84
ERCC4Q92889 SLC1A5-205ENST00000594991 2031 ntTSL 2 BASIC20.31■□□□□ 0.84
ERCC4Q92889 FAM110A-202ENST00000304189 1856 ntAPPRIS P1 TSL 2 BASIC20.3■□□□□ 0.84
ERCC4Q92889 HOOK2-202ENST00000397668 2513 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
ERCC4Q92889 ART1-201ENST00000250693 1312 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
ERCC4Q92889 HNRNPLL-202ENST00000358367 2779 ntTSL 5 BASIC20.3■□□□□ 0.84
ERCC4Q92889 H2AFV-201ENST00000222690 3804 ntAPPRIS ALT1 TSL 2 BASIC20.3■□□□□ 0.84
ERCC4Q92889 PDE2A-226ENST00000544570 3119 ntTSL 5 BASIC20.3■□□□□ 0.84
ERCC4Q92889 KANSL2-212ENST00000550347 2714 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
ERCC4Q92889 AC055811.2-201ENST00000427497 1693 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
ERCC4Q92889 RABEP1-202ENST00000537505 5365 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
ERCC4Q92889 CKS1B-203ENST00000368439 912 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
ERCC4Q92889 RHOC-203ENST00000369632 1026 ntAPPRIS P1 TSL 3 BASIC20.3■□□□□ 0.84
ERCC4Q92889 UPK3B-203ENST00000394849 1041 ntAPPRIS ALT2 TSL 2 BASIC20.3■□□□□ 0.84
ERCC4Q92889 AL445472.1-201ENST00000452532 1007 ntTSL 2 BASIC20.3■□□□□ 0.84
ERCC4Q92889 NCAM1-AS1-201ENST00000526229 1081 ntTSL 2 BASIC20.3■□□□□ 0.84
ERCC4Q92889 LINC02256-201ENST00000561999 366 ntTSL 3 BASIC20.3■□□□□ 0.84
ERCC4Q92889 AC005606.2-201ENST00000564438 614 ntTSL 2 BASIC20.3■□□□□ 0.84
ERCC4Q92889 SNX21-213ENST00000614929 587 ntTSL 5 BASIC20.3■□□□□ 0.84
ERCC4Q92889 XKR4-203ENST00000622811 3907 ntAPPRIS P1 TSL 5 BASIC20.3■□□□□ 0.84
ERCC4Q92889 NOL4L-205ENST00000375678 2042 ntAPPRIS ALT2 TSL 2 BASIC20.3■□□□□ 0.84
ERCC4Q92889 TACC3-201ENST00000313288 2781 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
ERCC4Q92889 LRRC58-201ENST00000295628 7903 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
ERCC4Q92889 AC008969.1-203ENST00000313957 1897 ntTSL 2 BASIC20.3■□□□□ 0.84
ERCC4Q92889 DNAJC28-201ENST00000314399 1625 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
ERCC4Q92889 CCDC112-205ENST00000506442 2145 ntAPPRIS ALT2 TSL 2 BASIC20.3■□□□□ 0.84
ERCC4Q92889 ZIC3-202ENST00000370606 1968 ntTSL 5 BASIC20.3■□□□□ 0.84
ERCC4Q92889 MYOZ3-203ENST00000517768 1451 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
ERCC4Q92889 CCDC154-202ENST00000409671 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
ERCC4Q92889 ZBTB4-202ENST00000380599 5866 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
ERCC4Q92889 SLC22A7-201ENST00000372574 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
ERCC4Q92889 TLK2-201ENST00000326270 3512 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
ERCC4Q92889 ZNF211-201ENST00000240731 2440 ntAPPRIS P4 TSL 2 BASIC20.29■□□□□ 0.84
ERCC4Q92889 NUDT16L1-201ENST00000304301 1349 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
ERCC4Q92889 QSOX1-201ENST00000367600 2519 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
ERCC4Q92889 AC104809.2-201ENST00000418218 2274 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
ERCC4Q92889 FAM72C-201ENST00000369175 1658 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
ERCC4Q92889 ARFRP1-207ENST00000612157 1698 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
ERCC4Q92889 FAM72B-207ENST00000619376 1659 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
ERCC4Q92889 MAPKAP1-208ENST00000394063 2977 ntTSL 5 BASIC20.29■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 66.9 ms