Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 ASIC3-202ENST00000349064 1895 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
USP39Q53GS9 FAM220CP-201ENST00000395253 831 ntBASIC18.19■□□□□ 0.5
USP39Q53GS9 AC068472.1-201ENST00000474589 881 ntBASIC18.19■□□□□ 0.5
USP39Q53GS9 LAMTOR5-204ENST00000483260 694 ntTSL 2 BASIC18.19■□□□□ 0.5
USP39Q53GS9 LINC02199-203ENST00000510229 496 ntTSL 3 BASIC18.19■□□□□ 0.5
USP39Q53GS9 AC021739.2-201ENST00000558375 964 ntTSL 5 BASIC18.19■□□□□ 0.5
USP39Q53GS9 ANKRD34C-AS1-205ENST00000560452 576 ntTSL 4 BASIC18.19■□□□□ 0.5
USP39Q53GS9 AC055811.1-201ENST00000584203 1231 ntTSL 5 BASIC18.19■□□□□ 0.5
USP39Q53GS9 C19orf25-210ENST00000591027 574 ntTSL 4 BASIC18.19■□□□□ 0.5
USP39Q53GS9 LAMTOR5-206ENST00000602318 634 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
USP39Q53GS9 CHST13-202ENST00000615522 1146 ntTSL 5 BASIC18.19■□□□□ 0.5
USP39Q53GS9 AC116407.3-201ENST00000623905 1129 ntBASIC18.19■□□□□ 0.5
USP39Q53GS9 THOP1-201ENST00000307741 4804 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
USP39Q53GS9 HMGA1-201ENST00000311487 1920 ntAPPRIS P4 TSL 1 (best) BASIC18.19■□□□□ 0.5
USP39Q53GS9 CXorf58-201ENST00000379211 1752 ntAPPRIS P2 TSL 1 (best) BASIC18.19■□□□□ 0.5
USP39Q53GS9 CCNA1-202ENST00000440264 1758 ntAPPRIS P1 TSL 2 BASIC18.19■□□□□ 0.5
USP39Q53GS9 PRR5-201ENST00000006251 1767 ntTSL 2 BASIC18.19■□□□□ 0.5
USP39Q53GS9 AC009102.3-201ENST00000623118 1491 ntBASIC18.19■□□□□ 0.5
USP39Q53GS9 TESMIN-201ENST00000255087 2579 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
USP39Q53GS9 PLPPR2-208ENST00000591608 2552 ntAPPRIS ALT2 TSL 2 BASIC18.19■□□□□ 0.5
USP39Q53GS9 AC005082.1-201ENST00000413042 2259 ntBASIC18.19■□□□□ 0.5
USP39Q53GS9 AC007040.2-201ENST00000606025 4170 ntAPPRIS P1 TSL 5 BASIC18.19■□□□□ 0.5
USP39Q53GS9 NOMO2-201ENST00000330537 4352 ntAPPRIS ALT2 TSL 5 BASIC18.19■□□□□ 0.5
USP39Q53GS9 FAM72C-201ENST00000369175 1658 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
USP39Q53GS9 TAF6-211ENST00000453269 2464 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
USP39Q53GS9 COL27A1-201ENST00000356083 7790 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
USP39Q53GS9 ANKRD17-211ENST00000639793 3486 ntTSL 5 BASIC18.18■□□□□ 0.5
USP39Q53GS9 NEUROD2-201ENST00000302584 2041 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
USP39Q53GS9 MTSS1-203ENST00000431961 1711 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
USP39Q53GS9 ENTPD8-202ENST00000371506 2222 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
USP39Q53GS9 LONP1-201ENST00000360614 3236 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
USP39Q53GS9 HDAC11-221ENST00000522202 1559 ntAPPRIS ALT2 TSL 2 BASIC18.18■□□□□ 0.5
USP39Q53GS9 ARFIP2-203ENST00000423813 1430 ntTSL 2 BASIC18.18■□□□□ 0.5
USP39Q53GS9 ALDH5A1-201ENST00000348925 2266 ntAPPRIS P4 TSL 1 (best) BASIC18.18■□□□□ 0.5
USP39Q53GS9 SCRN1-203ENST00000409570 535 ntTSL 4 BASIC18.18■□□□□ 0.5
USP39Q53GS9 AL807752.7-201ENST00000471521 989 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
USP39Q53GS9 FIBP-212ENST00000533045 1173 ntTSL 5 BASIC18.18■□□□□ 0.5
USP39Q53GS9 CMC2-212ENST00000565650 671 ntAPPRIS P1 TSL 2 BASIC18.18■□□□□ 0.5
USP39Q53GS9 PRSS8-206ENST00000568261 1214 ntTSL 2 BASIC18.18■□□□□ 0.5
USP39Q53GS9 HNF4A-208ENST00000609795 1192 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
USP39Q53GS9 SEC22C-202ENST00000273156 1608 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
USP39Q53GS9 DAPK2-205ENST00000558069 1473 ntTSL 5 BASIC18.18■□□□□ 0.5
USP39Q53GS9 HEXDC-203ENST00000577944 1820 ntTSL 5 BASIC18.18■□□□□ 0.5
USP39Q53GS9 RNPS1-219ENST00000566397 1685 ntTSL 2 BASIC18.18■□□□□ 0.5
USP39Q53GS9 TSPAN32-201ENST00000182290 1318 ntAPPRIS P2 TSL 1 (best) BASIC18.18■□□□□ 0.5
USP39Q53GS9 TSPAN32-217ENST00000612299 1301 ntTSL 5 BASIC18.18■□□□□ 0.5
USP39Q53GS9 NKX2-1-203ENST00000518149 2583 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
USP39Q53GS9 ANO7L1-203ENST00000602586 1720 ntBASIC18.18■□□□□ 0.5
USP39Q53GS9 SSC4D-201ENST00000275560 2801 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
USP39Q53GS9 HTD2-206ENST00000481972 1378 ntAPPRIS P1 TSL 2 BASIC18.17■□□□□ 0.5
USP39Q53GS9 EIF2B4-210ENST00000493344 1949 ntTSL 5 BASIC18.17■□□□□ 0.5
USP39Q53GS9 FAM237A-203ENST00000543490 1376 ntAPPRIS P1 TSL 5 BASIC18.17■□□□□ 0.5
USP39Q53GS9 TFEB-203ENST00000358871 2188 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
USP39Q53GS9 ARHGAP22-203ENST00000374172 2380 ntTSL 2 BASIC18.17■□□□□ 0.5
USP39Q53GS9 FAM110A-201ENST00000246100 1619 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
USP39Q53GS9 CLK1-205ENST00000434813 2026 ntTSL 2 BASIC18.17■□□□□ 0.5
USP39Q53GS9 CSPG5-202ENST00000383738 4161 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
USP39Q53GS9 SSSCA1-201ENST00000309328 698 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
USP39Q53GS9 ADIPOR1-202ENST00000367254 1116 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
USP39Q53GS9 ZNF655-218ENST00000454654 571 ntTSL 4 BASIC18.17■□□□□ 0.5
USP39Q53GS9 MIR3936HG-202ENST00000457998 733 ntTSL 2 BASIC18.17■□□□□ 0.5
USP39Q53GS9 AC092183.1-201ENST00000469884 875 ntBASIC18.17■□□□□ 0.5
USP39Q53GS9 SPCS2-207ENST00000530257 612 ntTSL 3 BASIC18.17■□□□□ 0.5
USP39Q53GS9 UBE2Q2P1-205ENST00000559871 534 ntTSL 5 BASIC18.17■□□□□ 0.5
USP39Q53GS9 AC026336.2-201ENST00000563922 763 ntTSL 2 BASIC18.17■□□□□ 0.5
USP39Q53GS9 AC005336.2-201ENST00000593183 939 ntBASIC18.17■□□□□ 0.5
USP39Q53GS9 ANO2-212ENST00000612575 1087 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
USP39Q53GS9 TEX264-216ENST00000614067 1174 ntAPPRIS ALT2 TSL 3 BASIC18.17■□□□□ 0.5
USP39Q53GS9 ANKMY2-206ENST00000628652 1270 ntTSL 5 BASIC18.17■□□□□ 0.5
USP39Q53GS9 ISLR2-201ENST00000361742 4817 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
USP39Q53GS9 PRR23B-201ENST00000329447 1896 ntAPPRIS P1 BASIC18.17■□□□□ 0.5
USP39Q53GS9 JAG1-201ENST00000254958 6048 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
USP39Q53GS9 CACNA1B-205ENST00000371363 9758 ntAPPRIS ALT2 TSL 5 BASIC18.17■□□□□ 0.5
USP39Q53GS9 UNG-202ENST00000336865 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
USP39Q53GS9 DCAF4-201ENST00000353777 1940 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
USP39Q53GS9 MTMR9LP-203ENST00000426597 1545 ntBASIC18.17■□□□□ 0.5
USP39Q53GS9 HAUS8-202ENST00000448593 1545 ntAPPRIS ALT2 TSL 5 BASIC18.17■□□□□ 0.5
USP39Q53GS9 MAPKAPK2-202ENST00000367103 2961 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
USP39Q53GS9 ZNF839-202ENST00000442396 2987 ntAPPRIS P3 TSL 5 BASIC18.17■□□□□ 0.5
USP39Q53GS9 PLCH2-205ENST00000449969 5450 ntTSL 5 BASIC18.17■□□□□ 0.5
USP39Q53GS9 MIDN-206ENST00000591446 3243 ntAPPRIS P2 TSL 1 (best) BASIC18.17■□□□□ 0.5
USP39Q53GS9 TRIM63-201ENST00000374272 1770 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
USP39Q53GS9 MAZ-212ENST00000568282 1593 ntTSL 5 BASIC18.17■□□□□ 0.5
USP39Q53GS9 IDS-202ENST00000370441 1399 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
USP39Q53GS9 AMZ2-203ENST00000392720 1378 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
USP39Q53GS9 SLC22A23-203ENST00000406686 5658 ntAPPRIS P2 TSL 5 BASIC18.16■□□□□ 0.5
USP39Q53GS9 CNNM3-202ENST00000377060 3308 ntTSL 2 BASIC18.16■□□□□ 0.5
USP39Q53GS9 DOK4-218ENST00000569548 1848 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
USP39Q53GS9 POLR3E-209ENST00000564209 2464 ntTSL 2 BASIC18.16■□□□□ 0.5
USP39Q53GS9 CYR61-201ENST00000451137 2290 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
USP39Q53GS9 TCAP-201ENST00000309889 2123 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
USP39Q53GS9 MLX-201ENST00000246912 2586 ntAPPRIS P3 TSL 1 (best) BASIC18.16■□□□□ 0.5
USP39Q53GS9 CCDC188-201ENST00000439765 1475 ntAPPRIS P1 TSL 5 BASIC18.16■□□□□ 0.5
USP39Q53GS9 EHMT1-203ENST00000460843 5137 ntAPPRIS P2 TSL 5 BASIC18.16■□□□□ 0.5
USP39Q53GS9 RPS6KA3-201ENST00000379565 7918 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
USP39Q53GS9 CLN3-204ENST00000357857 1720 ntTSL 2 BASIC18.16■□□□□ 0.5
USP39Q53GS9 SPAG1-206ENST00000520643 1723 ntTSL 2 BASIC18.16■□□□□ 0.5
USP39Q53GS9 ASPM-201ENST00000294732 6132 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
USP39Q53GS9 MRPL52-202ENST00000355151 1118 ntAPPRIS ALT1 TSL 1 (best) BASIC18.16■□□□□ 0.5
USP39Q53GS9 S100A16-204ENST00000368706 1118 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 54 ms