Protein–RNA interactions for Protein: P78363

ABCA4, Retinal-specific ATP-binding cassette transporter, humanhuman

Predictions only

Length 2,273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA4P78363 ZNF517-202ENST00000525105 1383 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
ABCA4P78363 LINC01356-201ENST00000401018 1819 ntTSL 2 BASIC15.37■□□□□ 0.05
ABCA4P78363 PTRH1-204ENST00000419060 2692 ntAPPRIS P1 TSL 2 BASIC15.37■□□□□ 0.05
ABCA4P78363 SYTL1-208ENST00000543823 2229 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
ABCA4P78363 AC105001.2-201ENST00000554914 1753 ntAPPRIS P1 TSL 2 BASIC15.37■□□□□ 0.05
ABCA4P78363 SCARB1-201ENST00000261693 2611 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
ABCA4P78363 TMEFF1-201ENST00000374879 2611 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
ABCA4P78363 P2RY6-204ENST00000393592 1515 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
ABCA4P78363 PSMD3-201ENST00000264639 2158 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
ABCA4P78363 PAX4-204ENST00000463946 1613 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
ABCA4P78363 HOXC6-201ENST00000243108 1733 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
ABCA4P78363 PYCR1-217ENST00000629768 1740 ntTSL 5 BASIC15.37■□□□□ 0.05
ABCA4P78363 MED15P9-202ENST00000427638 1841 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
ABCA4P78363 SP100-208ENST00000427101 1922 ntTSL 2 BASIC15.37■□□□□ 0.05
ABCA4P78363 GSTZ1-202ENST00000349555 867 ntTSL 2 BASIC15.37■□□□□ 0.05
ABCA4P78363 GSTO1-202ENST00000369713 972 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
ABCA4P78363 SELENOM-201ENST00000400299 694 ntAPPRIS P2 TSL 1 (best) BASIC15.37■□□□□ 0.05
ABCA4P78363 NUTF2-206ENST00000569436 1119 ntAPPRIS P1 TSL 2 BASIC15.37■□□□□ 0.05
ABCA4P78363 SMIM22-210ENST00000615471 928 ntAPPRIS ALT2 TSL 3 BASIC15.37■□□□□ 0.05
ABCA4P78363 PPM1B-201ENST00000282412 2606 ntAPPRIS P4 TSL 1 (best) BASIC15.37■□□□□ 0.05
ABCA4P78363 FGFR1-203ENST00000341462 6054 ntTSL 5 BASIC15.37■□□□□ 0.05
ABCA4P78363 FAM157B-201ENST00000446912 1795 ntTSL 2 BASIC15.37■□□□□ 0.05
ABCA4P78363 FBXO24-201ENST00000241071 2276 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
ABCA4P78363 SGO1-209ENST00000442720 2266 ntAPPRIS ALT2 TSL 1 (best) BASIC15.37■□□□□ 0.05
ABCA4P78363 OLFM1-205ENST00000371796 2492 ntTSL 2 BASIC15.37■□□□□ 0.05
ABCA4P78363 ADORA2A-201ENST00000337539 2569 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
ABCA4P78363 CXXC5-201ENST00000302517 2658 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
ABCA4P78363 ERLIN2-202ENST00000335171 1742 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
ABCA4P78363 GRIK4-205ENST00000527524 5861 ntAPPRIS P1 TSL 2 BASIC15.36■□□□□ 0.05
ABCA4P78363 FGF14-IT1-202ENST00000607251 2123 ntTSL 2 BASIC15.36■□□□□ 0.05
ABCA4P78363 FAM213B-204ENST00000419916 2749 ntAPPRIS P3 TSL 1 (best) BASIC15.36■□□□□ 0.05
ABCA4P78363 INTS10-201ENST00000397977 2804 ntAPPRIS P1 TSL 2 BASIC15.36■□□□□ 0.05
ABCA4P78363 CXXC1-202ENST00000412036 2280 ntAPPRIS ALT1 TSL 1 (best) BASIC15.36■□□□□ 0.05
ABCA4P78363 AC135782.1-201ENST00000537498 2154 ntTSL 2 BASIC15.36■□□□□ 0.05
ABCA4P78363 OTOP2-202ENST00000580223 2086 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
ABCA4P78363 FBXL18-205ENST00000620087 2076 ntTSL 5 BASIC15.36■□□□□ 0.05
ABCA4P78363 AC063977.6-201ENST00000600074 1763 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
ABCA4P78363 DNAJC28-203ENST00000402202 1480 ntAPPRIS P1 TSL 5 BASIC15.36■□□□□ 0.05
ABCA4P78363 CHRNG-201ENST00000389492 1398 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
ABCA4P78363 METTL21A-202ENST00000406927 1103 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
ABCA4P78363 AC027117.2-201ENST00000522768 510 ntTSL 3 BASIC15.36■□□□□ 0.05
ABCA4P78363 AC107918.4-202ENST00000641623 219 ntBASIC15.36■□□□□ 0.05
ABCA4P78363 SLC38A10-201ENST00000288439 2708 ntAPPRIS P3 TSL 1 (best) BASIC15.36■□□□□ 0.05
ABCA4P78363 WWOX-203ENST00000406884 1701 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
ABCA4P78363 ZNF74-203ENST00000403682 2789 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
ABCA4P78363 PRR36-202ENST00000618550 4456 ntAPPRIS P2 TSL 5 BASIC15.36■□□□□ 0.05
ABCA4P78363 C21orf59-201ENST00000290155 1692 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
ABCA4P78363 PMPCAP1-201ENST00000508114 1576 ntBASIC15.36■□□□□ 0.05
ABCA4P78363 FOXP3-206ENST00000557224 1371 ntTSL 2 BASIC15.36■□□□□ 0.05
ABCA4P78363 KRTAP1-1-201ENST00000306271 903 ntAPPRIS P1 BASIC15.36■□□□□ 0.05
ABCA4P78363 HIST2H3D-201ENST00000331491 411 ntAPPRIS P1 BASIC15.36■□□□□ 0.05
ABCA4P78363 HIST2H3PS2-201ENST00000392948 411 ntAPPRIS P1 BASIC15.36■□□□□ 0.05
ABCA4P78363 METTL21AP1-201ENST00000438852 635 ntBASIC15.36■□□□□ 0.05
ABCA4P78363 HOPX-214ENST00000556614 1138 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
ABCA4P78363 MTDHP4-201ENST00000600287 670 ntBASIC15.36■□□□□ 0.05
ABCA4P78363 NAF1-202ENST00000422287 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC15.36■□□□□ 0.05
ABCA4P78363 MIB2-231ENST00000518681 3116 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
ABCA4P78363 DHRS7-212ENST00000611054 1321 ntTSL 5 BASIC15.35■□□□□ 0.05
ABCA4P78363 WNK1-206ENST00000535572 9886 ntAPPRIS ALT2 TSL 1 (best) BASIC15.35■□□□□ 0.05
ABCA4P78363 DLK2-201ENST00000357338 2038 ntAPPRIS P3 TSL 2 BASIC15.35■□□□□ 0.05
ABCA4P78363 KDM4B-202ENST00000381759 3058 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
ABCA4P78363 SLC9A6-201ENST00000370695 4725 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
ABCA4P78363 FAR2P2-204ENST00000424873 2070 ntTSL 2 BASIC15.35■□□□□ 0.05
ABCA4P78363 HNRNPM-201ENST00000325495 2494 ntAPPRIS P4 TSL 1 (best) BASIC15.35■□□□□ 0.05
ABCA4P78363 ESPN-205ENST00000461727 1869 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
ABCA4P78363 MRPL55-208ENST00000366734 990 ntAPPRIS P1 TSL 2 BASIC15.35■□□□□ 0.05
ABCA4P78363 MRPL55-217ENST00000366746 565 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
ABCA4P78363 KLF4P1-201ENST00000412782 1185 ntBASIC15.35■□□□□ 0.05
ABCA4P78363 KRT18P27-201ENST00000427733 1299 ntBASIC15.35■□□□□ 0.05
ABCA4P78363 LINC00595-207ENST00000476909 792 ntTSL 2 BASIC15.35■□□□□ 0.05
ABCA4P78363 TIMM17B-208ENST00000495490 939 ntTSL 5 BASIC15.35■□□□□ 0.05
ABCA4P78363 KIAA0930-215ENST00000496226 589 ntTSL 5 BASIC15.35■□□□□ 0.05
ABCA4P78363 AC092718.3-202ENST00000564536 1032 ntAPPRIS P5 TSL 5 BASIC15.35■□□□□ 0.05
ABCA4P78363 ELOF1-204ENST00000587806 1172 ntTSL 2 BASIC15.35■□□□□ 0.05
ABCA4P78363 CYGB-205ENST00000590175 830 ntTSL 3 BASIC15.35■□□□□ 0.05
ABCA4P78363 AL022328.2-201ENST00000608016 640 ntTSL 3 BASIC15.35■□□□□ 0.05
ABCA4P78363 AL596442.2-201ENST00000610240 980 ntBASIC15.35■□□□□ 0.05
ABCA4P78363 LY6E-207ENST00000520466 1419 ntAPPRIS P2 TSL 2 BASIC15.35■□□□□ 0.05
ABCA4P78363 DDX51-202ENST00000397333 4718 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
ABCA4P78363 ISCU-205ENST00000535729 1330 ntTSL 2 BASIC15.35■□□□□ 0.05
ABCA4P78363 SPNS1-201ENST00000311008 2208 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
ABCA4P78363 CACNA1B-205ENST00000371363 9758 ntAPPRIS ALT2 TSL 5 BASIC15.35■□□□□ 0.05
ABCA4P78363 FZD10-201ENST00000229030 3281 ntAPPRIS P1 BASIC15.35■□□□□ 0.05
ABCA4P78363 FZD10-202ENST00000539839 3282 ntBASIC15.35■□□□□ 0.05
ABCA4P78363 AC079776.2-201ENST00000641154 1609 ntBASIC15.35■□□□□ 0.05
ABCA4P78363 STX17-212ENST00000534052 2424 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
ABCA4P78363 POLE2-202ENST00000539565 1792 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
ABCA4P78363 GAS7-205ENST00000542249 1799 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
ABCA4P78363 EMX2-203ENST00000553456 2897 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
ABCA4P78363 CD9-202ENST00000382515 1229 ntTSL 5 BASIC15.34■□□□□ 0.05
ABCA4P78363 AC007967.2-201ENST00000432613 625 ntBASIC15.34■□□□□ 0.05
ABCA4P78363 TSPAN4-214ENST00000525201 834 ntTSL 5 BASIC15.34■□□□□ 0.05
ABCA4P78363 ARAP1-AS1-201ENST00000542022 388 ntTSL 5 BASIC15.34■□□□□ 0.05
ABCA4P78363 AP000763.4-201ENST00000544674 752 ntTSL 5 BASIC15.34■□□□□ 0.05
ABCA4P78363 FUT6-212ENST00000592563 1095 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
ABCA4P78363 MIR1199-201ENST00000621445 119 ntBASIC15.34■□□□□ 0.05
ABCA4P78363 ENTPD8-202ENST00000371506 2222 ntAPPRIS P1 TSL 5 BASIC15.34■□□□□ 0.05
ABCA4P78363 NUDC-201ENST00000321265 1800 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
ABCA4P78363 C19orf25-203ENST00000585675 1837 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
ABCA4P78363 MOV10L1-203ENST00000395852 1422 ntTSL 2 BASIC15.34■□□□□ 0.05
Retrieved 100 of 98,524 protein–RNA pairs in 44 ms