Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 DNAJC28-203ENST00000402202 1480 ntAPPRIS P1 TSL 5 BASIC20.52■□□□□ 0.88
SMARCA1P28370 SLC22A4-201ENST00000200652 2201 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
SMARCA1P28370 KRT86-202ENST00000423955 2217 ntAPPRIS P1 TSL 2 BASIC20.52■□□□□ 0.88
SMARCA1P28370 ATP5J-201ENST00000284971 614 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
SMARCA1P28370 PTPMT1-201ENST00000326656 928 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
SMARCA1P28370 NAT6-202ENST00000417393 1163 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.88
SMARCA1P28370 AC005104.2-201ENST00000427818 678 ntBASIC20.52■□□□□ 0.88
SMARCA1P28370 NPM2-204ENST00000518119 1190 ntAPPRIS P2 TSL 1 (best) BASIC20.52■□□□□ 0.88
SMARCA1P28370 C19orf25-210ENST00000591027 574 ntTSL 4 BASIC20.52■□□□□ 0.88
SMARCA1P28370 FLT3LG-206ENST00000597551 951 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
SMARCA1P28370 AL732292.2-201ENST00000609649 430 ntBASIC20.52■□□□□ 0.88
SMARCA1P28370 SIGIRR-201ENST00000332725 1639 ntAPPRIS P1 TSL 2 BASIC20.52■□□□□ 0.88
SMARCA1P28370 HPDL-201ENST00000334815 1629 ntAPPRIS P1 BASIC20.52■□□□□ 0.88
SMARCA1P28370 ASL-205ENST00000395332 1622 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
SMARCA1P28370 ADM-208ENST00000534464 1640 ntTSL 2 BASIC20.52■□□□□ 0.88
SMARCA1P28370 FXYD6-204ENST00000526014 2171 ntAPPRIS P2 TSL 1 (best) BASIC20.52■□□□□ 0.88
SMARCA1P28370 ZNF274-203ENST00000424679 2539 ntTSL 1 (best) BASIC20.52■□□□□ 0.87
SMARCA1P28370 AL445433.2-201ENST00000425113 2544 ntTSL 2 BASIC20.52■□□□□ 0.87
SMARCA1P28370 KLHL29-203ENST00000486442 5287 ntAPPRIS P1 TSL 5 BASIC20.52■□□□□ 0.87
SMARCA1P28370 ZNF668-208ENST00000538906 2865 ntAPPRIS P1 TSL 2 BASIC20.52■□□□□ 0.87
SMARCA1P28370 TOM1L2-203ENST00000395739 1766 ntTSL 2 BASIC20.51■□□□□ 0.87
SMARCA1P28370 PDLIM3-201ENST00000284767 2589 ntTSL 5 BASIC20.51■□□□□ 0.87
SMARCA1P28370 THNSL2-203ENST00000377254 1560 ntTSL 2 BASIC20.51■□□□□ 0.87
SMARCA1P28370 PEX16-201ENST00000241041 1479 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
SMARCA1P28370 FAM91A1-207ENST00000521166 2706 ntTSL 2 BASIC20.51■□□□□ 0.87
SMARCA1P28370 TFEB-206ENST00000403298 2162 ntAPPRIS P1 TSL 5 BASIC20.51■□□□□ 0.87
SMARCA1P28370 SRPX-202ENST00000432886 1725 ntTSL 2 BASIC20.51■□□□□ 0.87
SMARCA1P28370 NFKBID-210ENST00000606253 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
SMARCA1P28370 AC008764.6-201ENST00000595909 2069 ntBASIC20.51■□□□□ 0.87
SMARCA1P28370 NDUFS7-201ENST00000233627 1039 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
SMARCA1P28370 TFPT-203ENST00000391759 1205 ntAPPRIS P3 TSL 1 (best) BASIC20.51■□□□□ 0.87
SMARCA1P28370 LSM5-204ENST00000409909 740 ntTSL 2 BASIC20.51■□□□□ 0.87
SMARCA1P28370 THAP5-204ENST00000438865 868 ntTSL 2 BASIC20.51■□□□□ 0.87
SMARCA1P28370 ICAM2-203ENST00000449662 1221 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
SMARCA1P28370 UNC93B7-201ENST00000509439 705 ntBASIC20.51■□□□□ 0.87
SMARCA1P28370 CBFB-203ENST00000561924 584 ntTSL 5 BASIC20.51■□□□□ 0.87
SMARCA1P28370 AC026336.2-201ENST00000563922 763 ntTSL 2 BASIC20.51■□□□□ 0.87
SMARCA1P28370 AC111152.3-201ENST00000569699 673 ntBASIC20.51■□□□□ 0.87
SMARCA1P28370 SYNGR2-202ENST00000585591 949 ntAPPRIS P1 TSL 5 BASIC20.51■□□□□ 0.87
SMARCA1P28370 LINC01711-201ENST00000598340 967 ntBASIC20.51■□□□□ 0.87
SMARCA1P28370 AXIN2-208ENST00000611991 1019 ntTSL 5 BASIC20.51■□□□□ 0.87
SMARCA1P28370 APAF1-210ENST00000551964 5444 ntAPPRIS P4 TSL 1 (best) BASIC20.51■□□□□ 0.87
SMARCA1P28370 RPL13P5-202ENST00000412023 1438 ntTSL 2 BASIC20.51■□□□□ 0.87
SMARCA1P28370 GINS4-206ENST00000520710 2022 ntTSL 2 BASIC20.51■□□□□ 0.87
SMARCA1P28370 IL17RC-201ENST00000295981 2621 ntAPPRIS P4 TSL 2 BASIC20.51■□□□□ 0.87
SMARCA1P28370 OLFM2-203ENST00000590841 1665 ntTSL 2 BASIC20.51■□□□□ 0.87
SMARCA1P28370 MARCH8-201ENST00000319836 5272 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
SMARCA1P28370 HSPA1A-202ENST00000608703 1909 ntTSL 2 BASIC20.51■□□□□ 0.87
SMARCA1P28370 LTV1-201ENST00000367576 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
SMARCA1P28370 AC118553.2-203ENST00000639037 2590 ntAPPRIS P5 TSL 5 BASIC20.5■□□□□ 0.87
SMARCA1P28370 TPSD1-201ENST00000211076 1499 ntAPPRIS P2 TSL 1 (best) BASIC20.5■□□□□ 0.87
SMARCA1P28370 AMZ2-203ENST00000392720 1378 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
SMARCA1P28370 NR1H3-202ENST00000405576 1352 ntTSL 5 BASIC20.5■□□□□ 0.87
SMARCA1P28370 TRPV4-208ENST00000544971 2295 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
SMARCA1P28370 NSUN5P2-205ENST00000602348 1776 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
SMARCA1P28370 EIF2B5-201ENST00000273783 2655 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
SMARCA1P28370 TMEM14A-201ENST00000211314 992 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
SMARCA1P28370 DFFB-203ENST00000341385 572 ntTSL 5 BASIC20.5■□□□□ 0.87
SMARCA1P28370 UBXN10-AS1-201ENST00000442226 510 ntTSL 2 BASIC20.5■□□□□ 0.87
SMARCA1P28370 B4GALT1-AS1-202ENST00000442432 843 ntTSL 2 BASIC20.5■□□□□ 0.87
SMARCA1P28370 RAP1B-228ENST00000542145 1060 ntTSL 2 BASIC20.5■□□□□ 0.87
SMARCA1P28370 AC004801.5-202ENST00000546804 530 ntTSL 4 BASIC20.5■□□□□ 0.87
SMARCA1P28370 FAM220A-205ENST00000578372 207 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
SMARCA1P28370 AC022150.1-201ENST00000599222 640 ntTSL 3 BASIC20.5■□□□□ 0.87
SMARCA1P28370 LCE1E-203ENST00000619588 267 ntAPPRIS ALT2 TSL 5 BASIC20.5■□□□□ 0.87
SMARCA1P28370 AD001527.2-201ENST00000622994 785 ntBASIC20.5■□□□□ 0.87
SMARCA1P28370 ASAH1-255ENST00000637638 699 ntTSL 2 BASIC20.5■□□□□ 0.87
SMARCA1P28370 FIBIN-201ENST00000318627 1938 ntAPPRIS P1 BASIC20.5■□□□□ 0.87
SMARCA1P28370 RNF2-201ENST00000367509 1677 ntTSL 2 BASIC20.5■□□□□ 0.87
SMARCA1P28370 RBFA-202ENST00000306735 1407 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
SMARCA1P28370 CABP4-202ENST00000438189 1426 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
SMARCA1P28370 SERPINB6-207ENST00000612421 1570 ntTSL 2 BASIC20.5■□□□□ 0.87
SMARCA1P28370 LRRC27-214ENST00000625755 1738 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
SMARCA1P28370 USP18-201ENST00000215794 2129 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
SMARCA1P28370 TNFSF14-202ENST00000599359 1476 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
SMARCA1P28370 CDC14B-203ENST00000375242 2965 ntTSL 2 BASIC20.49■□□□□ 0.87
SMARCA1P28370 HACE1-202ENST00000369125 3102 ntTSL 2 BASIC20.49■□□□□ 0.87
SMARCA1P28370 TM2D3-201ENST00000333202 1381 ntAPPRIS P4 TSL 1 (best) BASIC20.49■□□□□ 0.87
SMARCA1P28370 HOXA-AS3-205ENST00000524304 2063 ntTSL 2 BASIC20.49■□□□□ 0.87
SMARCA1P28370 LUC7L-204ENST00000397783 1504 ntTSL 2 BASIC20.49■□□□□ 0.87
SMARCA1P28370 ECE2-201ENST00000324557 1823 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
SMARCA1P28370 SEMA6C-209ENST00000613223 1950 ntTSL 5 BASIC20.49■□□□□ 0.87
SMARCA1P28370 RPS12-201ENST00000230050 631 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
SMARCA1P28370 CYCS-202ENST00000409409 974 ntAPPRIS P1 TSL 3 BASIC20.49■□□□□ 0.87
SMARCA1P28370 ABCD1P5-201ENST00000445663 754 ntBASIC20.49■□□□□ 0.87
SMARCA1P28370 CT47A11-201ENST00000457020 1294 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
SMARCA1P28370 RLN3-202ENST00000585987 541 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
SMARCA1P28370 BIRC5-207ENST00000590449 568 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
SMARCA1P28370 IFNL4P1-201ENST00000607083 540 ntBASIC20.49■□□□□ 0.87
SMARCA1P28370 REXO1L6P-202ENST00000619970 1078 ntBASIC20.49■□□□□ 0.87
SMARCA1P28370 AP000867.4-201ENST00000641616 219 ntBASIC20.49■□□□□ 0.87
SMARCA1P28370 COLEC11-206ENST00000403096 1557 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
SMARCA1P28370 PSRC1-201ENST00000369903 1710 ntAPPRIS P3 TSL 5 BASIC20.49■□□□□ 0.87
SMARCA1P28370 TEFM-205ENST00000581216 1891 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
SMARCA1P28370 NEIL2-202ENST00000403422 2016 ntTSL 2 BASIC20.49■□□□□ 0.87
SMARCA1P28370 CLDND1-204ENST00000394185 2159 ntAPPRIS P1 TSL 5 BASIC20.49■□□□□ 0.87
SMARCA1P28370 BAGE2-202ENST00000474011 1482 ntTSL 2 BASIC20.49■□□□□ 0.87
SMARCA1P28370 RXRB-202ENST00000374685 2846 ntAPPRIS ALT1 TSL 1 (best) BASIC20.49■□□□□ 0.87
SMARCA1P28370 KLF16-201ENST00000250916 2890 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
SMARCA1P28370 DNM1-206ENST00000475805 2710 ntAPPRIS ALT1 TSL 2 BASIC20.48■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 23.6 ms