Protein–RNA interactions for Protein: P02458

COL2A1, Collagen alpha-1(II) chain, humanhuman

Predicted RBP Predictions only

Length 1,487 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL2A1P02458 USP49-202ENST00000373010 2446 ntTSL 5 BASIC20.78■□□□□ 0.92
COL2A1P02458 FMR1-201ENST00000218200 4333 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
COL2A1P02458 MRI1-201ENST00000040663 1735 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
COL2A1P02458 PITX2-201ENST00000306732 2320 ntAPPRIS P4 TSL 1 (best) BASIC20.78■□□□□ 0.92
COL2A1P02458 ARRDC2-201ENST00000222250 2503 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
COL2A1P02458 MCU-202ENST00000373053 2949 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
COL2A1P02458 TRH-202ENST00000507066 1580 ntAPPRIS ALT1 TSL 5 BASIC20.78■□□□□ 0.92
COL2A1P02458 MYC-201ENST00000259523 2042 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
COL2A1P02458 DCAF8-218ENST00000610139 1607 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
COL2A1P02458 RER1-202ENST00000378512 1404 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
COL2A1P02458 CYBA-210ENST00000569359 1415 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
COL2A1P02458 DLGAP1-222ENST00000639615 1898 ntTSL 5 BASIC20.77■□□□□ 0.92
COL2A1P02458 KSR1-205ENST00000509603 2731 ntAPPRIS ALT2 TSL 5 BASIC20.77■□□□□ 0.92
COL2A1P02458 GPR89P-201ENST00000407924 1495 ntBASIC20.77■□□□□ 0.92
COL2A1P02458 PPIB-201ENST00000300026 1081 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
COL2A1P02458 TSTD1-203ENST00000368024 457 ntTSL 2 BASIC20.77■□□□□ 0.92
COL2A1P02458 PAXX-201ENST00000371620 812 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
COL2A1P02458 RFXANK-203ENST00000407360 1212 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
COL2A1P02458 SLC4A1APP2-201ENST00000424054 1259 ntBASIC20.77■□□□□ 0.92
COL2A1P02458 RPS15P9-201ENST00000494093 319 ntBASIC20.77■□□□□ 0.92
COL2A1P02458 SUMO2P17-202ENST00000508743 738 ntTSL 3 BASIC20.77■□□□□ 0.92
COL2A1P02458 STK19B-204ENST00000512515 211 ntBASIC20.77■□□□□ 0.92
COL2A1P02458 BAX-213ENST00000539787 458 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
COL2A1P02458 BRICD5-202ENST00000562360 783 ntTSL 2 BASIC20.77■□□□□ 0.92
COL2A1P02458 AC126696.3-201ENST00000563993 575 ntTSL 4 BASIC20.77■□□□□ 0.92
COL2A1P02458 AC093503.3-201ENST00000624917 2352 ntBASIC20.77■□□□□ 0.92
COL2A1P02458 PCBP4-210ENST00000471622 1784 ntTSL 5 BASIC20.77■□□□□ 0.92
COL2A1P02458 CLN8-211ENST00000636934 1790 ntTSL 5 BASIC20.77■□□□□ 0.92
COL2A1P02458 TNXA-203ENST00000507684 2038 ntBASIC20.77■□□□□ 0.92
COL2A1P02458 SYT7-206ENST00000540677 2013 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
COL2A1P02458 AK3-202ENST00000381809 2736 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
COL2A1P02458 LCA10-201ENST00000618311 1392 ntTSL 2 BASIC20.77■□□□□ 0.92
COL2A1P02458 ADGRB1-202ENST00000517894 6241 ntAPPRIS P1 TSL 5 BASIC20.77■□□□□ 0.92
COL2A1P02458 MEN1-201ENST00000312049 2761 ntAPPRIS ALT1 TSL 1 (best) BASIC20.77■□□□□ 0.92
COL2A1P02458 TNFRSF14-AS1-205ENST00000449660 1629 ntTSL 2 BASIC20.77■□□□□ 0.92
COL2A1P02458 TRIM60-203ENST00000508504 1674 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
COL2A1P02458 AK1-203ENST00000373176 2266 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
COL2A1P02458 C14orf93-204ENST00000397377 1776 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
COL2A1P02458 KRT18P55-202ENST00000578578 1546 ntBASIC20.76■□□□□ 0.91
COL2A1P02458 MYCLP1-201ENST00000372451 1075 ntBASIC20.76■□□□□ 0.91
COL2A1P02458 FAM172A-207ENST00000509739 1031 ntTSL 2 BASIC20.76■□□□□ 0.91
COL2A1P02458 LINC02123-201ENST00000514869 885 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
COL2A1P02458 AC008992.1-201ENST00000591132 446 ntTSL 2 BASIC20.76■□□□□ 0.91
COL2A1P02458 AC074135.2-201ENST00000600896 510 ntTSL 3 BASIC20.76■□□□□ 0.91
COL2A1P02458 AC092902.2-205ENST00000622381 394 ntTSL 5 BASIC20.76■□□□□ 0.91
COL2A1P02458 ACSM2B-208ENST00000565322 1834 ntTSL 2 BASIC20.76■□□□□ 0.91
COL2A1P02458 PSMD4-201ENST00000368881 1333 ntTSL 5 BASIC20.76■□□□□ 0.91
COL2A1P02458 MARK4-210ENST00000620044 2105 ntTSL 5 BASIC20.76■□□□□ 0.91
COL2A1P02458 PLA2G2F-201ENST00000375102 2723 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
COL2A1P02458 SYCE1-203ENST00000368517 1377 ntAPPRIS P3 TSL 5 BASIC20.76■□□□□ 0.91
COL2A1P02458 MCU-201ENST00000357157 2874 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
COL2A1P02458 RAP2A-201ENST00000245304 5487 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
COL2A1P02458 INHA-201ENST00000243786 1468 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
COL2A1P02458 GPX3-209ENST00000614343 1478 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
COL2A1P02458 TTC29-201ENST00000325106 1785 ntAPPRIS P3 TSL 1 (best) BASIC20.76■□□□□ 0.91
COL2A1P02458 MON1B-202ENST00000439557 1759 ntTSL 2 BASIC20.76■□□□□ 0.91
COL2A1P02458 TTC29-205ENST00000504425 1777 ntAPPRIS ALT2 TSL 5 BASIC20.76■□□□□ 0.91
COL2A1P02458 RABL2B-205ENST00000395595 2428 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
COL2A1P02458 CCDC34-202ENST00000328697 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
COL2A1P02458 RNPS1-205ENST00000561718 1806 ntTSL 3 BASIC20.76■□□□□ 0.91
COL2A1P02458 FLJ13224-201ENST00000313737 1514 ntBASIC20.76■□□□□ 0.91
COL2A1P02458 PLCXD1-202ENST00000381663 1863 ntAPPRIS P2 TSL 5 BASIC20.76■□□□□ 0.91
COL2A1P02458 NHLH2-201ENST00000320238 2512 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
COL2A1P02458 PKD1P6-201ENST00000343738 4769 ntBASIC20.75■□□□□ 0.91
COL2A1P02458 HELT-201ENST00000338875 1008 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
COL2A1P02458 PFDN6-201ENST00000374606 740 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
COL2A1P02458 ANKRD54-202ENST00000406423 954 ntTSL 3 BASIC20.75■□□□□ 0.91
COL2A1P02458 AP001062.3-201ENST00000422357 704 ntTSL 2 BASIC20.75■□□□□ 0.91
COL2A1P02458 LINC01705-201ENST00000438158 562 ntTSL 2 BASIC20.75■□□□□ 0.91
COL2A1P02458 FIS1-203ENST00000442303 631 ntTSL 3 BASIC20.75■□□□□ 0.91
COL2A1P02458 HYAL1-206ENST00000447605 666 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
COL2A1P02458 IGHV3-52-201ENST00000519770 353 ntBASIC20.75■□□□□ 0.91
COL2A1P02458 BLOC1S6-202ENST00000562384 494 ntTSL 4 BASIC20.75■□□□□ 0.91
COL2A1P02458 NUTF2-206ENST00000569436 1119 ntAPPRIS P1 TSL 2 BASIC20.75■□□□□ 0.91
COL2A1P02458 ICAM2-205ENST00000578379 1064 ntTSL 5 BASIC20.75■□□□□ 0.91
COL2A1P02458 ICAM2-206ENST00000578892 1056 ntTSL 3 BASIC20.75■□□□□ 0.91
COL2A1P02458 GHRHR-201ENST00000326139 1602 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
COL2A1P02458 ARMC6-202ENST00000392335 2383 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
COL2A1P02458 FNDC8-201ENST00000158009 1388 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
COL2A1P02458 AC002310.6-201ENST00000624451 1377 ntBASIC20.75■□□□□ 0.91
COL2A1P02458 VAV1-204ENST00000596764 2775 ntTSL 2 BASIC20.75■□□□□ 0.91
COL2A1P02458 SSUH2-202ENST00000341795 1799 ntAPPRIS P3 TSL 1 (best) BASIC20.75■□□□□ 0.91
COL2A1P02458 RNF32-201ENST00000311822 1842 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
COL2A1P02458 SP9-201ENST00000394967 2554 ntAPPRIS P1 TSL 5 BASIC20.75■□□□□ 0.91
COL2A1P02458 APOA5-201ENST00000227665 1897 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
COL2A1P02458 HOXA11-201ENST00000006015 2295 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
COL2A1P02458 ZBTB8A-201ENST00000316459 1943 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
COL2A1P02458 SLC27A3-204ENST00000368661 2410 ntAPPRIS P2 TSL 1 (best) BASIC20.75■□□□□ 0.91
COL2A1P02458 MYO19-225ENST00000621344 1640 ntTSL 2 BASIC20.75■□□□□ 0.91
COL2A1P02458 DTX3-204ENST00000548804 2067 ntAPPRIS P3 TSL 5 BASIC20.75■□□□□ 0.91
COL2A1P02458 SMN1-201ENST00000351205 900 ntAPPRIS P3 TSL 1 (best) BASIC20.75■□□□□ 0.91
COL2A1P02458 HIST1H2BL-201ENST00000377401 488 ntAPPRIS P1 BASIC20.75■□□□□ 0.91
COL2A1P02458 SMN2-201ENST00000380741 900 ntAPPRIS P4 TSL 1 (best) BASIC20.75■□□□□ 0.91
COL2A1P02458 MRPL23-201ENST00000381514 919 ntTSL 3 BASIC20.75■□□□□ 0.91
COL2A1P02458 GNB2-205ENST00000419828 1285 ntTSL 5 BASIC20.75■□□□□ 0.91
COL2A1P02458 IDH3B-206ENST00000474315 1279 ntAPPRIS ALT1 TSL 1 (best) BASIC20.75■□□□□ 0.91
COL2A1P02458 TUBA1A-203ENST00000546918 984 ntTSL 3 BASIC20.75■□□□□ 0.91
COL2A1P02458 CDC42EP4-206ENST00000581014 737 ntTSL 5 BASIC20.75■□□□□ 0.91
COL2A1P02458 AC244517.5-205ENST00000623615 575 ntTSL 4 BASIC20.75■□□□□ 0.91
COL2A1P02458 SMN2-216ENST00000638794 846 ntAPPRIS ALT2 TSL 5 BASIC20.75■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 37.6 ms