Protein–RNA interactions for Protein: O60858

TRIM13, E3 ubiquitin-protein ligase TRIM13, humanhuman

Predictions only

Length 407 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM13O60858 SYNGR4-204ENST00000601610 859 ntTSL 3 BASIC17.66■□□□□ 0.42
TRIM13O60858 BX649632.1-201ENST00000610187 819 ntTSL 3 BASIC17.66■□□□□ 0.42
TRIM13O60858 SUSD3-205ENST00000617293 1076 ntAPPRIS ALT2 TSL 3 BASIC17.66■□□□□ 0.42
TRIM13O60858 AC116562.4-202ENST00000641738 218 ntBASIC17.66■□□□□ 0.42
TRIM13O60858 PLA2G12A-201ENST00000243501 5226 ntAPPRIS P2 TSL 1 (best) BASIC17.66■□□□□ 0.42
TRIM13O60858 LINC00304-203ENST00000565008 1864 ntBASIC17.66■□□□□ 0.42
TRIM13O60858 WBP2-219ENST00000626827 1867 ntTSL 5 BASIC17.66■□□□□ 0.42
TRIM13O60858 IL12RB2-202ENST00000371000 2454 ntTSL 2 BASIC17.66■□□□□ 0.42
TRIM13O60858 DAPK1-207ENST00000469640 5899 ntTSL 5 BASIC17.66■□□□□ 0.42
TRIM13O60858 DNM2-201ENST00000355667 3541 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
TRIM13O60858 FICD-204ENST00000552695 3347 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
TRIM13O60858 MMP17-206ENST00000535291 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
TRIM13O60858 RDH8-203ENST00000591589 1715 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
TRIM13O60858 PRRT2-219ENST00000637565 1733 ntTSL 5 BASIC17.66■□□□□ 0.42
TRIM13O60858 OR13J1-201ENST00000377981 1339 ntAPPRIS P1 BASIC17.66■□□□□ 0.42
TRIM13O60858 PPP4C-202ENST00000561610 1333 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
TRIM13O60858 RASA4-202ENST00000449970 2787 ntAPPRIS ALT1 TSL 2 BASIC17.66■□□□□ 0.42
TRIM13O60858 CD24-201ENST00000606017 2180 ntAPPRIS P3 TSL 1 (best) BASIC17.66■□□□□ 0.42
TRIM13O60858 SLC7A9-204ENST00000590341 1752 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
TRIM13O60858 NFS1-202ENST00000374085 2645 ntTSL 2 BASIC17.66■□□□□ 0.42
TRIM13O60858 GPAT2P1-202ENST00000471661 1569 ntTSL 2 BASIC17.66■□□□□ 0.42
TRIM13O60858 NFATC4-215ENST00000554661 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
TRIM13O60858 CD151-213ENST00000528011 1369 ntAPPRIS ALT1 TSL 5 BASIC17.66■□□□□ 0.42
TRIM13O60858 FAM9B-202ENST00000362066 2047 ntTSL 2 BASIC17.65■□□□□ 0.42
TRIM13O60858 NEIL2-202ENST00000403422 2016 ntTSL 2 BASIC17.65■□□□□ 0.42
TRIM13O60858 LPAR5-202ENST00000431922 2695 ntAPPRIS P1 TSL 2 BASIC17.65■□□□□ 0.42
TRIM13O60858 SLC16A5-203ENST00000538213 1842 ntAPPRIS ALT2 TSL 2 BASIC17.65■□□□□ 0.42
TRIM13O60858 GPD2-201ENST00000310454 6041 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
TRIM13O60858 GAL3ST4-201ENST00000360039 2537 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
TRIM13O60858 SOCS2-AS1-202ENST00000500986 1655 ntTSL 2 BASIC17.65■□□□□ 0.42
TRIM13O60858 EGR2-203ENST00000439032 2844 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
TRIM13O60858 MYOZ3-203ENST00000517768 1451 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
TRIM13O60858 DNAH17-AS1-202ENST00000591373 1453 ntTSL 5 BASIC17.65■□□□□ 0.42
TRIM13O60858 SUZ12-204ENST00000580398 3977 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
TRIM13O60858 SPAG6-203ENST00000376624 2605 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
TRIM13O60858 MFSD2A-201ENST00000372809 2173 ntTSL 2 BASIC17.65■□□□□ 0.42
TRIM13O60858 SHTN1-203ENST00000392901 2190 ntAPPRIS ALT2 TSL 2 BASIC17.65■□□□□ 0.42
TRIM13O60858 CLDN11-201ENST00000064724 2169 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
TRIM13O60858 LRRC27-214ENST00000625755 1738 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
TRIM13O60858 TCF3-204ENST00000453954 3585 ntTSL 5 BASIC17.65■□□□□ 0.42
TRIM13O60858 ADGRB2-201ENST00000373655 5400 ntAPPRIS P4 TSL 1 (best) BASIC17.65■□□□□ 0.42
TRIM13O60858 MPG-201ENST00000219431 1193 ntAPPRIS P4 TSL 3 BASIC17.65■□□□□ 0.42
TRIM13O60858 MTHFD1L-201ENST00000367307 1049 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
TRIM13O60858 RBM17P1-201ENST00000453646 1190 ntBASIC17.65■□□□□ 0.42
TRIM13O60858 AL049780.2-201ENST00000556236 367 ntTSL 3 BASIC17.65■□□□□ 0.42
TRIM13O60858 H3F3B-206ENST00000587560 551 ntAPPRIS P1 TSL 2 BASIC17.65■□□□□ 0.42
TRIM13O60858 AC008687.5-201ENST00000593746 558 ntBASIC17.65■□□□□ 0.42
TRIM13O60858 JOSD2-204ENST00000598418 996 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
TRIM13O60858 FAM3A-204ENST00000369643 1521 ntAPPRIS P1 TSL 2 BASIC17.65■□□□□ 0.42
TRIM13O60858 PLPP4-202ENST00000398250 1521 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
TRIM13O60858 NCF1B-201ENST00000423083 1516 ntTSL 2 BASIC17.65■□□□□ 0.42
TRIM13O60858 PLEKHG6-203ENST00000396988 2963 ntAPPRIS P1 TSL 2 BASIC17.65■□□□□ 0.42
TRIM13O60858 SLC2A6-202ENST00000371899 2528 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
TRIM13O60858 HOXA2-201ENST00000222718 1814 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
TRIM13O60858 ECE2-201ENST00000324557 1823 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
TRIM13O60858 ABHD14B-206ENST00000483233 2056 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
TRIM13O60858 LINC01569-202ENST00000573042 2093 ntTSL 2 BASIC17.65■□□□□ 0.42
TRIM13O60858 PHF20L1-203ENST00000337920 2311 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
TRIM13O60858 JKAMP-215ENST00000616435 2338 ntTSL 5 BASIC17.65■□□□□ 0.42
TRIM13O60858 NF2-208ENST00000403435 2568 ntTSL 5 BASIC17.65■□□□□ 0.42
TRIM13O60858 PTP4A1-201ENST00000370651 5088 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
TRIM13O60858 AC084018.2-201ENST00000613093 2607 ntBASIC17.65■□□□□ 0.42
TRIM13O60858 SH3BP4-202ENST00000392011 5194 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
TRIM13O60858 ASIC2-201ENST00000225823 3443 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
TRIM13O60858 FBXO7-201ENST00000266087 2195 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.42
TRIM13O60858 IRGC-201ENST00000244314 1662 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.42
TRIM13O60858 ARSI-203ENST00000515301 1429 ntTSL 4 BASIC17.64■□□□□ 0.42
TRIM13O60858 OSBP2-202ENST00000401475 2468 ntTSL 2 BASIC17.64■□□□□ 0.42
TRIM13O60858 CBL-204ENST00000634840 4813 ntAPPRIS ALT2 TSL 5 BASIC17.64■□□□□ 0.42
TRIM13O60858 FTSJ1-201ENST00000019019 1986 ntAPPRIS ALT1 TSL 2 BASIC17.64■□□□□ 0.41
TRIM13O60858 PROSER1-201ENST00000352251 5168 ntAPPRIS P2 TSL 1 (best) BASIC17.64■□□□□ 0.41
TRIM13O60858 RAB8A-201ENST00000300935 2827 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
TRIM13O60858 NPAS3-202ENST00000356141 2802 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
TRIM13O60858 AC133785.1-201ENST00000429282 2824 ntTSL 2 BASIC17.64■□□□□ 0.41
TRIM13O60858 TCTEX1D1-201ENST00000282670 2001 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
TRIM13O60858 SERPINB6-208ENST00000616722 2047 ntTSL 2 BASIC17.64■□□□□ 0.41
TRIM13O60858 GAL3ST1-201ENST00000338911 1782 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
TRIM13O60858 QPCTL-201ENST00000012049 2310 ntAPPRIS P1 TSL 2 BASIC17.64■□□□□ 0.41
TRIM13O60858 TRPM4-213ENST00000599628 1829 ntTSL 2 BASIC17.64■□□□□ 0.41
TRIM13O60858 NTAN1-201ENST00000287706 1204 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
TRIM13O60858 TMIGD2-201ENST00000301272 1262 ntAPPRIS P3 TSL 1 (best) BASIC17.64■□□□□ 0.41
TRIM13O60858 ING1-202ENST00000338450 1189 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
TRIM13O60858 AL162231.1-203ENST00000416454 465 ntAPPRIS ALT2 TSL 2 BASIC17.64■□□□□ 0.41
TRIM13O60858 AC091133.2-201ENST00000505903 428 ntTSL 3 BASIC17.64■□□□□ 0.41
TRIM13O60858 MFGE8-203ENST00000542878 1172 ntTSL 2 BASIC17.64■□□□□ 0.41
TRIM13O60858 AC011773.3-202ENST00000549291 790 ntTSL 3 BASIC17.64■□□□□ 0.41
TRIM13O60858 IMPA2-208ENST00000589238 923 ntTSL 3 BASIC17.64■□□□□ 0.41
TRIM13O60858 KIF16B-201ENST00000354981 5261 ntAPPRIS P3 TSL 1 (best) BASIC17.64■□□□□ 0.41
TRIM13O60858 NRBP2-202ENST00000442628 3587 ntAPPRIS P1 TSL 2 BASIC17.64■□□□□ 0.41
TRIM13O60858 CXXC1P1-201ENST00000483225 1897 ntTSL 2 BASIC17.64■□□□□ 0.41
TRIM13O60858 TBX6-203ENST00000553607 2162 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
TRIM13O60858 RBCK1-202ENST00000356286 2774 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
TRIM13O60858 HLA-J-201ENST00000462773 1622 ntBASIC17.64■□□□□ 0.41
TRIM13O60858 ZADH2-201ENST00000322342 7732 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
TRIM13O60858 EIF3L-202ENST00000406934 2282 ntTSL 2 BASIC17.64■□□□□ 0.41
TRIM13O60858 KCNT1-202ENST00000371757 4717 ntAPPRIS P3 TSL 1 (best) BASIC17.64■□□□□ 0.41
TRIM13O60858 STRADA-254ENST00000640999 2336 ntAPPRIS ALT1 TSL 5 BASIC17.64■□□□□ 0.41
TRIM13O60858 ACD-203ENST00000602320 1408 ntAPPRIS ALT2 TSL 5 BASIC17.64■□□□□ 0.41
TRIM13O60858 FRMD4A-203ENST00000357447 6821 ntAPPRIS P2 TSL 1 (best) BASIC17.64■□□□□ 0.41
TRIM13O60858 FAM210A-201ENST00000322247 4340 ntAPPRIS P1 TSL 2 BASIC17.63■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 30.6 ms