Protein–RNA interactions for Protein: O43196

MSH5, MutS protein homolog 5, humanhuman

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5O43196 AC105202.1-201ENST00000517833 995 ntTSL 3 BASIC24.44■■□□□ 1.5
MSH5O43196 AC084032.1-201ENST00000552324 578 ntTSL 4 BASIC24.44■■□□□ 1.5
MSH5O43196 RNPS1-224ENST00000569598 918 ntTSL 5 BASIC24.44■■□□□ 1.5
MSH5O43196 AL732292.2-201ENST00000609649 430 ntBASIC24.44■■□□□ 1.5
MSH5O43196 AP005131.7-201ENST00000610087 611 ntBASIC24.44■■□□□ 1.5
MSH5O43196 BEAN1-211ENST00000622872 1171 ntAPPRIS P2 TSL 5 BASIC24.44■■□□□ 1.5
MSH5O43196 BX119927.1-201ENST00000636596 1552 ntBASIC24.44■■□□□ 1.5
MSH5O43196 GSDMD-206ENST00000526406 2496 ntAPPRIS P2 TSL 2 BASIC24.44■■□□□ 1.5
MSH5O43196 USF2-202ENST00000343550 1523 ntTSL 1 (best) BASIC24.44■■□□□ 1.5
MSH5O43196 ANKMY1-209ENST00000405523 1827 ntTSL 1 (best) BASIC24.44■■□□□ 1.5
MSH5O43196 RABGAP1L-204ENST00000357444 2605 ntTSL 1 (best) BASIC24.44■■□□□ 1.5
MSH5O43196 ISLR2-202ENST00000419208 2306 ntTSL 1 (best) BASIC24.44■■□□□ 1.5
MSH5O43196 PARD3-205ENST00000374773 3420 ntTSL 5 BASIC24.44■■□□□ 1.5
MSH5O43196 ZNF768-202ENST00000562803 1999 ntAPPRIS ALT2 TSL 3 BASIC24.43■■□□□ 1.5
MSH5O43196 DENND6A-201ENST00000311128 4655 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
MSH5O43196 C6orf47-202ENST00000375911 2475 ntAPPRIS P1 BASIC24.43■■□□□ 1.5
MSH5O43196 TEX13A-201ENST00000600991 1377 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
MSH5O43196 CD276-201ENST00000318424 2738 ntTSL 5 BASIC24.43■■□□□ 1.5
MSH5O43196 CCDC74A-206ENST00000467992 1347 ntAPPRIS ALT2 TSL 1 (best) BASIC24.43■■□□□ 1.5
MSH5O43196 MMP17-206ENST00000535291 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC24.43■■□□□ 1.5
MSH5O43196 FDCSP-201ENST00000317987 566 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
MSH5O43196 BUB3-202ENST00000368859 667 ntTSL 3 BASIC24.43■■□□□ 1.5
MSH5O43196 C1orf146-202ENST00000370375 830 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
MSH5O43196 SDCBP2-203ENST00000381808 1261 ntTSL 1 (best) BASIC24.43■■□□□ 1.5
MSH5O43196 GGT1-204ENST00000401885 968 ntTSL 1 (best) BASIC24.43■■□□□ 1.5
MSH5O43196 RASA4DP-201ENST00000460726 1199 ntBASIC24.43■■□□□ 1.5
MSH5O43196 IL12A-AS1-201ENST00000462431 988 ntTSL 5 BASIC24.43■■□□□ 1.5
MSH5O43196 AP006621.4-201ENST00000527021 532 ntTSL 5 BASIC24.43■■□□□ 1.5
MSH5O43196 AP000462.1-201ENST00000535704 818 ntTSL 3 BASIC24.43■■□□□ 1.5
MSH5O43196 AL359399.1-201ENST00000557610 462 ntTSL 3 BASIC24.43■■□□□ 1.5
MSH5O43196 AC007495.2-201ENST00000562822 459 ntTSL 3 BASIC24.43■■□□□ 1.5
MSH5O43196 SPINT1-AS1-202ENST00000564302 643 ntTSL 2 BASIC24.43■■□□□ 1.5
MSH5O43196 NUTF2-205ENST00000568396 1179 ntAPPRIS P1 TSL 3 BASIC24.43■■□□□ 1.5
MSH5O43196 SEPT9-246ENST00000592951 1793 ntAPPRIS ALT2 TSL 2 BASIC24.43■■□□□ 1.5
MSH5O43196 CCDC92-201ENST00000238156 2787 ntTSL 1 (best) BASIC24.43■■□□□ 1.5
MSH5O43196 RNF112-201ENST00000461366 3212 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
MSH5O43196 AKR7A3-201ENST00000361640 1710 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
MSH5O43196 ST6GALNAC6-202ENST00000373141 2424 ntAPPRIS ALT1 TSL 2 BASIC24.43■■□□□ 1.5
MSH5O43196 NDRG2-215ENST00000553503 2162 ntAPPRIS ALT1 TSL 1 (best) BASIC24.43■■□□□ 1.5
MSH5O43196 PRORSD1P-202ENST00000563365 2154 ntBASIC24.43■■□□□ 1.5
MSH5O43196 RAB8A-201ENST00000300935 2827 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
MSH5O43196 CASKIN2-205ENST00000581870 1612 ntTSL 2 BASIC24.43■■□□□ 1.5
MSH5O43196 MTHFD1L-211ENST00000611279 3475 ntAPPRIS ALT1 TSL 5 BASIC24.43■■□□□ 1.5
MSH5O43196 IL15-208ENST00000529613 1355 ntAPPRIS P1 TSL 5 BASIC24.42■■□□□ 1.5
MSH5O43196 TXNRD2-202ENST00000400518 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC24.42■■□□□ 1.5
MSH5O43196 GLT8D1-213ENST00000491606 1577 ntAPPRIS P1 TSL 5 BASIC24.42■■□□□ 1.5
MSH5O43196 PRKRA-203ENST00000432031 1344 ntTSL 1 (best) BASIC24.42■■□□□ 1.5
MSH5O43196 SRSF1-208ENST00000584773 1317 ntTSL 5 BASIC24.42■■□□□ 1.5
MSH5O43196 LAMC3-202ENST00000361069 6133 ntAPPRIS P1 TSL 2 BASIC24.42■■□□□ 1.5
MSH5O43196 BCL11A-209ENST00000489516 1508 ntTSL 5 BASIC24.42■■□□□ 1.5
MSH5O43196 KCNQ5-207ENST00000403813 6539 ntAPPRIS ALT2 TSL 5 BASIC24.42■■□□□ 1.5
MSH5O43196 ANKS3-230ENST00000614075 2387 ntAPPRIS P1 TSL 5 BASIC24.42■■□□□ 1.5
MSH5O43196 KRT87P-201ENST00000529785 1700 ntTSL 2 BASIC24.42■■□□□ 1.5
MSH5O43196 FAM57B-204ENST00000564806 1710 ntTSL 2 BASIC24.42■■□□□ 1.5
MSH5O43196 CGB7-201ENST00000377280 918 ntAPPRIS P1 TSL 3 BASIC24.42■■□□□ 1.5
MSH5O43196 GGT1-208ENST00000404920 657 ntTSL 1 (best) BASIC24.42■■□□□ 1.5
MSH5O43196 RAB3GAP1-202ENST00000425393 1139 ntTSL 2 BASIC24.42■■□□□ 1.5
MSH5O43196 AP002383.4-201ENST00000442518 975 ntBASIC24.42■■□□□ 1.5
MSH5O43196 AC092941.2-201ENST00000444379 1008 ntTSL 3 BASIC24.42■■□□□ 1.5
MSH5O43196 CMPK1-205ENST00000471289 816 ntTSL 2 BASIC24.42■■□□□ 1.5
MSH5O43196 GGTLC2-203ENST00000480559 657 ntTSL 1 (best) BASIC24.42■■□□□ 1.5
MSH5O43196 LINC02106-201ENST00000506534 606 ntTSL 2 BASIC24.42■■□□□ 1.5
MSH5O43196 AL023284.3-202ENST00000571188 543 ntTSL 5 BASIC24.42■■□□□ 1.5
MSH5O43196 IL11-204ENST00000590625 1028 ntTSL 2 BASIC24.42■■□□□ 1.5
MSH5O43196 KLK7-206ENST00000597707 1054 ntTSL 1 (best) BASIC24.42■■□□□ 1.5
MSH5O43196 BCL2L12-208ENST00000600947 633 ntTSL 1 (best) BASIC24.42■■□□□ 1.5
MSH5O43196 AGAP1-205ENST00000409538 6138 ntTSL 5 BASIC24.42■■□□□ 1.5
MSH5O43196 RNH1-201ENST00000354420 1894 ntAPPRIS P1 TSL 5 BASIC24.42■■□□□ 1.5
MSH5O43196 PPP2R2C-209ENST00000515571 1832 ntTSL 1 (best) BASIC24.42■■□□□ 1.5
MSH5O43196 ARHGAP5-203ENST00000396582 5786 ntTSL 1 (best) BASIC24.42■■□□□ 1.5
MSH5O43196 ARPC4-201ENST00000397261 2582 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
MSH5O43196 SHKBP1-201ENST00000291842 2363 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
MSH5O43196 P2RY6-202ENST00000393590 2398 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
MSH5O43196 PPM1L-204ENST00000497343 1589 ntTSL 2 BASIC24.42■■□□□ 1.5
MSH5O43196 C1QTNF1-209ENST00000581774 1368 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
MSH5O43196 YPEL5-205ENST00000402708 1735 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
MSH5O43196 USP48-201ENST00000308271 4595 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
MSH5O43196 WIZP1-201ENST00000531444 2299 ntBASIC24.41■■□□□ 1.5
MSH5O43196 PPP4C-202ENST00000561610 1333 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
MSH5O43196 RNF187-201ENST00000305943 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC24.41■■□□□ 1.5
MSH5O43196 HSPA8-202ENST00000453788 2004 ntTSL 1 (best) BASIC24.41■■□□□ 1.5
MSH5O43196 PRR16-201ENST00000379551 1826 ntTSL 1 (best) BASIC24.41■■□□□ 1.5
MSH5O43196 TMEM150B-201ENST00000326652 943 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
MSH5O43196 LCE1F-201ENST00000334371 357 ntAPPRIS P1 BASIC24.41■■□□□ 1.5
MSH5O43196 AL512661.1-201ENST00000434586 1253 ntBASIC24.41■■□□□ 1.5
MSH5O43196 GXYLT1P1-201ENST00000446657 490 ntBASIC24.41■■□□□ 1.5
MSH5O43196 HELT-202ENST00000505610 846 ntAPPRIS ALT1 TSL 1 (best) BASIC24.41■■□□□ 1.5
MSH5O43196 AC106895.1-201ENST00000515825 548 ntTSL 4 BASIC24.41■■□□□ 1.5
MSH5O43196 AC087623.2-201ENST00000528407 534 ntTSL 4 BASIC24.41■■□□□ 1.5
MSH5O43196 LINC02317-201ENST00000555413 426 ntTSL 3 BASIC24.41■■□□□ 1.5
MSH5O43196 CARHSP1-205ENST00000562843 843 ntTSL 2 BASIC24.41■■□□□ 1.5
MSH5O43196 FAM222A-201ENST00000358906 2731 ntAPPRIS P1 TSL 5 BASIC24.41■■□□□ 1.5
MSH5O43196 ICA1-208ENST00000407906 1615 ntTSL 1 (best) BASIC24.41■■□□□ 1.5
MSH5O43196 RTCA-203ENST00000370128 2535 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
MSH5O43196 AL162311.3-201ENST00000555918 2867 ntTSL 2 BASIC24.41■■□□□ 1.5
MSH5O43196 MTX1-201ENST00000316721 1441 ntTSL 1 (best) BASIC24.41■■□□□ 1.5
MSH5O43196 ABI1-206ENST00000376140 1446 ntTSL 5 BASIC24.41■■□□□ 1.5
MSH5O43196 TRIM63-201ENST00000374272 1770 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
MSH5O43196 KRBOX1-AS1-201ENST00000447834 2134 ntTSL 2 BASIC24.41■■□□□ 1.5
MSH5O43196 DGKI-202ENST00000424189 4163 ntAPPRIS ALT2 TSL 5 BASIC24.41■■□□□ 1.5
Retrieved 100 of 98,524 protein–RNA pairs in 69.8 ms