Protein–RNA interactions for Protein: Q9UPM8

AP4E1, AP-4 complex subunit epsilon-1, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AP4E1Q9UPM8 CD1E-214ENST00000452291 745 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
AP4E1Q9UPM8 C17orf49-208ENST00000552402 760 ntTSL 2 BASIC18.63■□□□□ 0.57
AP4E1Q9UPM8 AC009084.1-201ENST00000566869 317 ntTSL 5 BASIC18.63■□□□□ 0.57
AP4E1Q9UPM8 OPA3-202ENST00000323060 2250 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
AP4E1Q9UPM8 PLEKHB1-203ENST00000398492 2275 ntAPPRIS ALT1 TSL 1 (best) BASIC18.63■□□□□ 0.57
AP4E1Q9UPM8 AJUBA-202ENST00000361265 2569 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
AP4E1Q9UPM8 CHST11-201ENST00000303694 5709 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
AP4E1Q9UPM8 IGF2-207ENST00000434045 1583 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
AP4E1Q9UPM8 AC006116.8-202ENST00000587620 1550 ntBASIC18.63■□□□□ 0.57
AP4E1Q9UPM8 LZTS1-203ENST00000522290 1614 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
AP4E1Q9UPM8 L1CAM-205ENST00000370060 5113 ntAPPRIS P4 TSL 5 BASIC18.63■□□□□ 0.57
AP4E1Q9UPM8 NDUFS7-210ENST00000539480 1743 ntTSL 2 BASIC18.63■□□□□ 0.57
AP4E1Q9UPM8 PITPNM2-209ENST00000546049 1793 ntTSL 5 BASIC18.63■□□□□ 0.57
AP4E1Q9UPM8 CXXC5-211ENST00000511048 1892 ntAPPRIS P1 TSL 2 BASIC18.63■□□□□ 0.57
AP4E1Q9UPM8 MAEA-219ENST00000514708 1945 ntTSL 2 BASIC18.62■□□□□ 0.57
AP4E1Q9UPM8 GINM1-201ENST00000367419 2024 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
AP4E1Q9UPM8 RNPS1-203ENST00000397086 2069 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
AP4E1Q9UPM8 CTSA-204ENST00000372484 2149 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
AP4E1Q9UPM8 NME9-203ENST00000383180 2133 ntTSL 2 BASIC18.62■□□□□ 0.57
AP4E1Q9UPM8 KRT5-201ENST00000252242 2531 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
AP4E1Q9UPM8 RIC8A-208ENST00000527696 2565 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
AP4E1Q9UPM8 WWP1-202ENST00000517970 4686 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
AP4E1Q9UPM8 PLA2R1-202ENST00000392771 5160 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
AP4E1Q9UPM8 OXT-201ENST00000217386 513 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
AP4E1Q9UPM8 SELENOF-203ENST00000401030 727 ntTSL 2 BASIC18.62■□□□□ 0.57
AP4E1Q9UPM8 AL603832.1-201ENST00000421943 449 ntTSL 5 BASIC18.62■□□□□ 0.57
AP4E1Q9UPM8 LINC02106-201ENST00000506534 606 ntTSL 2 BASIC18.62■□□□□ 0.57
AP4E1Q9UPM8 AP000777.3-201ENST00000538705 491 ntTSL 3 BASIC18.62■□□□□ 0.57
AP4E1Q9UPM8 AC079031.1-201ENST00000542627 1035 ntTSL 3 BASIC18.62■□□□□ 0.57
AP4E1Q9UPM8 LINC01582-202ENST00000561215 452 ntTSL 4 BASIC18.62■□□□□ 0.57
AP4E1Q9UPM8 NDUFV2-AS1-203ENST00000608008 779 ntBASIC18.62■□□□□ 0.57
AP4E1Q9UPM8 ANKRD20A8P-203ENST00000641373 517 ntBASIC18.62■□□□□ 0.57
AP4E1Q9UPM8 RPLP0-219ENST00000551150 1344 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
AP4E1Q9UPM8 LINC00683-201ENST00000578803 2221 ntTSL 2 BASIC18.62■□□□□ 0.57
AP4E1Q9UPM8 A4GALT-203ENST00000401850 2321 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
AP4E1Q9UPM8 HCN4-201ENST00000261917 7228 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
AP4E1Q9UPM8 SMPD1-201ENST00000342245 2452 ntAPPRIS ALT1 TSL 1 (best) BASIC18.62■□□□□ 0.57
AP4E1Q9UPM8 GSDMD-206ENST00000526406 2496 ntAPPRIS P2 TSL 2 BASIC18.62■□□□□ 0.57
AP4E1Q9UPM8 NAA35-201ENST00000361671 2649 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
AP4E1Q9UPM8 B3GALNT1-202ENST00000392779 3221 ntAPPRIS P1 TSL 2 BASIC18.62■□□□□ 0.57
AP4E1Q9UPM8 PGM5-202ENST00000396396 3338 ntAPPRIS P1 TSL 2 BASIC18.62■□□□□ 0.57
AP4E1Q9UPM8 NIPAL2-202ENST00000430223 4496 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
AP4E1Q9UPM8 TAF4B-201ENST00000269142 5260 ntAPPRIS P3 TSL 1 (best) BASIC18.62■□□□□ 0.57
AP4E1Q9UPM8 FBXO41-205ENST00000521871 7336 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
AP4E1Q9UPM8 COL16A1-203ENST00000373672 5736 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
AP4E1Q9UPM8 REPS1-202ENST00000367663 2607 ntAPPRIS ALT1 TSL 5 BASIC18.61■□□□□ 0.57
AP4E1Q9UPM8 ZNF416-201ENST00000196489 2561 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
AP4E1Q9UPM8 PIANP-204ENST00000540656 2432 ntAPPRIS P3 TSL 2 BASIC18.61■□□□□ 0.57
AP4E1Q9UPM8 TRMT6-201ENST00000203001 2327 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
AP4E1Q9UPM8 GNE-204ENST00000539208 2190 ntTSL 2 BASIC18.61■□□□□ 0.57
AP4E1Q9UPM8 DUOXA1-201ENST00000267803 1996 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
AP4E1Q9UPM8 AC008969.1-203ENST00000313957 1897 ntTSL 2 BASIC18.61■□□□□ 0.57
AP4E1Q9UPM8 PSRC1-203ENST00000369907 1717 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
AP4E1Q9UPM8 PML-205ENST00000395132 1738 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
AP4E1Q9UPM8 SPDYE5-203ENST00000625065 1700 ntAPPRIS P2 TSL 5 BASIC18.61■□□□□ 0.57
AP4E1Q9UPM8 CEACAM16-202ENST00000587331 1692 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
AP4E1Q9UPM8 DHRS4L2-203ENST00000534993 1450 ntTSL 3 BASIC18.61■□□□□ 0.57
AP4E1Q9UPM8 KRT8P47-201ENST00000604727 1398 ntBASIC18.61■□□□□ 0.57
AP4E1Q9UPM8 ZFAND2A-201ENST00000316495 860 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
AP4E1Q9UPM8 SNCB-202ENST00000393693 1234 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
AP4E1Q9UPM8 ZFAND2A-203ENST00000401903 968 ntTSL 3 BASIC18.61■□□□□ 0.57
AP4E1Q9UPM8 DMKN-215ENST00000451297 1111 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
AP4E1Q9UPM8 ACY1-210ENST00000494103 1298 ntTSL 3 BASIC18.61■□□□□ 0.57
AP4E1Q9UPM8 AP006284.1-202ENST00000527113 527 ntTSL 4 BASIC18.61■□□□□ 0.57
AP4E1Q9UPM8 CD320-202ENST00000537716 1119 ntTSL 2 BASIC18.61■□□□□ 0.57
AP4E1Q9UPM8 ATP6V0C-203ENST00000565223 668 ntTSL 3 BASIC18.61■□□□□ 0.57
AP4E1Q9UPM8 ATP6V0C-204ENST00000568562 477 ntTSL 3 BASIC18.61■□□□□ 0.57
AP4E1Q9UPM8 AC087388.1-201ENST00000571370 1112 ntBASIC18.61■□□□□ 0.57
AP4E1Q9UPM8 TMEM255B-202ENST00000375353 6100 ntAPPRIS P2 TSL 1 (best) BASIC18.61■□□□□ 0.57
AP4E1Q9UPM8 FARP2-202ENST00000373287 2580 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
AP4E1Q9UPM8 ZNF346-208ENST00000511834 2306 ntTSL 5 BASIC18.61■□□□□ 0.57
AP4E1Q9UPM8 APEH-202ENST00000438011 2249 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
AP4E1Q9UPM8 TBC1D4-204ENST00000431480 6347 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
AP4E1Q9UPM8 C18orf8-208ENST00000590868 2002 ntTSL 2 BASIC18.61■□□□□ 0.57
AP4E1Q9UPM8 MIS18BP1-212ENST00000627697 1950 ntTSL 5 BASIC18.61■□□□□ 0.57
AP4E1Q9UPM8 THEG-201ENST00000342640 1877 ntAPPRIS P4 TSL 1 (best) BASIC18.6■□□□□ 0.57
AP4E1Q9UPM8 TCTN1-204ENST00000397659 1885 ntAPPRIS P4 TSL 1 (best) BASIC18.6■□□□□ 0.57
AP4E1Q9UPM8 JAKMIP1-202ENST00000409021 2975 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
AP4E1Q9UPM8 HHATL-201ENST00000310417 1750 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
AP4E1Q9UPM8 CA7-202ENST00000394069 1713 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
AP4E1Q9UPM8 UBN1-201ENST00000262376 6252 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
AP4E1Q9UPM8 LRRC23-209ENST00000443597 1628 ntAPPRIS P4 TSL 1 (best) BASIC18.6■□□□□ 0.57
AP4E1Q9UPM8 AQP5-201ENST00000293599 1450 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
AP4E1Q9UPM8 RNF157-201ENST00000269391 4955 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
AP4E1Q9UPM8 AC005332.1-201ENST00000577698 1310 ntBASIC18.6■□□□□ 0.57
AP4E1Q9UPM8 AANAT-202ENST00000392492 1005 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
AP4E1Q9UPM8 TSPY22P-201ENST00000427496 604 ntBASIC18.6■□□□□ 0.57
AP4E1Q9UPM8 AC112698.1-201ENST00000510299 916 ntBASIC18.6■□□□□ 0.57
AP4E1Q9UPM8 AC025259.3-201ENST00000564531 542 ntTSL 3 BASIC18.6■□□□□ 0.57
AP4E1Q9UPM8 AL449423.1-201ENST00000578935 435 ntTSL 3 BASIC18.6■□□□□ 0.57
AP4E1Q9UPM8 AC027682.4-201ENST00000605277 798 ntTSL 5 BASIC18.6■□□□□ 0.57
AP4E1Q9UPM8 TRIM8-201ENST00000302424 2831 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
AP4E1Q9UPM8 RHOU-201ENST00000366691 4372 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
AP4E1Q9UPM8 ZNF12-204ENST00000405858 5051 ntAPPRIS P4 TSL 1 (best) BASIC18.6■□□□□ 0.57
AP4E1Q9UPM8 CHTOP-205ENST00000403433 1923 ntAPPRIS ALT2 TSL 5 BASIC18.6■□□□□ 0.57
AP4E1Q9UPM8 AC117500.2-201ENST00000508145 1561 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
AP4E1Q9UPM8 RAB4A-205ENST00000618010 2799 ntTSL 3 BASIC18.59■□□□□ 0.57
AP4E1Q9UPM8 DBNDD2-204ENST00000372712 1537 ntAPPRIS P1 TSL 5 BASIC18.59■□□□□ 0.57
AP4E1Q9UPM8 C6orf141-206ENST00000529246 1450 ntAPPRIS P1 BASIC18.59■□□□□ 0.57
AP4E1Q9UPM8 ALAS2-203ENST00000396198 1936 ntTSL 5 BASIC18.59■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 37.2 ms