Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 PYCR2-208ENST00000612039 1549 ntTSL 3 BASIC33.89■■■■□ 3.02
SHROOM4Q9ULL8 PYCR2-209ENST00000612651 1538 ntTSL 5 BASIC33.89■■■■□ 3.02
SHROOM4Q9ULL8 LRRC43-201ENST00000339777 2028 ntAPPRIS P2 TSL 5 BASIC33.89■■■■□ 3.02
SHROOM4Q9ULL8 GNB2-207ENST00000427895 1146 ntTSL 5 BASIC33.88■■■■□ 3.01
SHROOM4Q9ULL8 AC131097.3-202ENST00000439270 331 ntTSL 5 BASIC33.88■■■■□ 3.01
SHROOM4Q9ULL8 KRT18P65-201ENST00000439811 1286 ntBASIC33.88■■■■□ 3.01
SHROOM4Q9ULL8 BCRP1-201ENST00000444246 691 ntBASIC33.88■■■■□ 3.01
SHROOM4Q9ULL8 AC008429.1-203ENST00000518894 548 ntTSL 4 BASIC33.88■■■■□ 3.01
SHROOM4Q9ULL8 C20orf181-201ENST00000623918 480 ntBASIC33.88■■■■□ 3.01
SHROOM4Q9ULL8 CD19-202ENST00000538922 1957 ntAPPRIS ALT2 TSL 5 BASIC33.88■■■■□ 3.01
SHROOM4Q9ULL8 WWOX-214ENST00000566780 2482 ntAPPRIS P1 TSL 1 (best) BASIC33.88■■■■□ 3.01
SHROOM4Q9ULL8 EOMES-202ENST00000449599 2829 ntTSL 1 (best) BASIC33.88■■■■□ 3.01
SHROOM4Q9ULL8 CAMK1D-201ENST00000378845 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC33.88■■■■□ 3.01
SHROOM4Q9ULL8 PRSS23-209ENST00000533902 2043 ntTSL 4 BASIC33.88■■■■□ 3.01
SHROOM4Q9ULL8 PTTG1IP-203ENST00000397887 2413 ntTSL 4 BASIC33.88■■■■□ 3.01
SHROOM4Q9ULL8 NPR3-203ENST00000415167 1753 ntAPPRIS P3 TSL 1 (best) BASIC33.88■■■■□ 3.01
SHROOM4Q9ULL8 MCFD2-205ENST00000409218 648 ntAPPRIS P1 TSL 2 BASIC33.88■■■■□ 3.01
SHROOM4Q9ULL8 RPL13P5-203ENST00000421824 845 ntTSL 3 BASIC33.88■■■■□ 3.01
SHROOM4Q9ULL8 AC112698.1-201ENST00000510299 916 ntBASIC33.88■■■■□ 3.01
SHROOM4Q9ULL8 AL096865.1-201ENST00000606796 927 ntBASIC33.88■■■■□ 3.01
SHROOM4Q9ULL8 MAP4K4-210ENST00000425019 4403 ntTSL 5 BASIC33.88■■■■□ 3.01
SHROOM4Q9ULL8 IL4I1-201ENST00000341114 2349 ntAPPRIS P4 TSL 1 (best) BASIC33.87■■■■□ 3.01
SHROOM4Q9ULL8 AC011840.1-202ENST00000436477 1351 ntTSL 2 BASIC33.87■■■■□ 3.01
SHROOM4Q9ULL8 DDX59-201ENST00000331314 2289 ntAPPRIS P1 TSL 1 (best) BASIC33.87■■■■□ 3.01
SHROOM4Q9ULL8 AC087457.1-201ENST00000503496 2727 ntTSL 2 BASIC33.87■■■■□ 3.01
SHROOM4Q9ULL8 METRN-204ENST00000568223 3325 ntAPPRIS P2 TSL 1 (best) BASIC33.87■■■■□ 3.01
SHROOM4Q9ULL8 CCSAP-201ENST00000284617 5121 ntAPPRIS P1 TSL 1 (best) BASIC33.87■■■■□ 3.01
SHROOM4Q9ULL8 PARD3-210ENST00000374794 5669 ntAPPRIS ALT2 TSL 1 (best) BASIC33.87■■■■□ 3.01
SHROOM4Q9ULL8 LCE1D-201ENST00000326233 430 ntAPPRIS P1 TSL 5 BASIC33.87■■■■□ 3.01
SHROOM4Q9ULL8 DNAJC4-203ENST00000355040 759 ntTSL 1 (best) BASIC33.87■■■■□ 3.01
SHROOM4Q9ULL8 AL669831.5-202ENST00000457084 566 ntTSL 4 BASIC33.87■■■■□ 3.01
SHROOM4Q9ULL8 MSRA-206ENST00000521209 814 ntTSL 3 BASIC33.87■■■■□ 3.01
SHROOM4Q9ULL8 H2AFJ-203ENST00000544848 644 ntAPPRIS P1 BASIC33.87■■■■□ 3.01
SHROOM4Q9ULL8 NKAPP1-205ENST00000585790 367 ntBASIC33.87■■■■□ 3.01
SHROOM4Q9ULL8 AC006557.2-201ENST00000592985 1240 ntBASIC33.87■■■■□ 3.01
SHROOM4Q9ULL8 ISLR2-208ENST00000565159 2824 ntAPPRIS P1 TSL 3 BASIC33.87■■■■□ 3.01
SHROOM4Q9ULL8 DTX4-201ENST00000227451 5642 ntAPPRIS P1 TSL 1 (best) BASIC33.86■■■■□ 3.01
SHROOM4Q9ULL8 NRN1-204ENST00000622188 1795 ntTSL 2 BASIC33.86■■■■□ 3.01
SHROOM4Q9ULL8 PRDM8-202ENST00000415738 3124 ntAPPRIS P1 TSL 1 (best) BASIC33.86■■■■□ 3.01
SHROOM4Q9ULL8 SLC22A1-203ENST00000457470 1452 ntTSL 5 BASIC33.86■■■■□ 3.01
SHROOM4Q9ULL8 GPX3-209ENST00000614343 1478 ntTSL 1 (best) BASIC33.86■■■■□ 3.01
SHROOM4Q9ULL8 PARP16-202ENST00000444347 2352 ntTSL 2 BASIC33.86■■■■□ 3.01
SHROOM4Q9ULL8 ZNF746-203ENST00000461958 5051 ntTSL 1 (best) BASIC33.86■■■■□ 3.01
SHROOM4Q9ULL8 CREM-211ENST00000374726 1207 ntTSL 1 (best) BASIC33.86■■■■□ 3.01
SHROOM4Q9ULL8 AL162231.1-204ENST00000423809 477 ntAPPRIS ALT2 TSL 3 BASIC33.86■■■■□ 3.01
SHROOM4Q9ULL8 RPL28-205ENST00000558131 444 ntTSL 5 BASIC33.86■■■■□ 3.01
SHROOM4Q9ULL8 NUTF2-206ENST00000569436 1119 ntAPPRIS P1 TSL 2 BASIC33.86■■■■□ 3.01
SHROOM4Q9ULL8 AL022328.2-201ENST00000608016 640 ntTSL 3 BASIC33.86■■■■□ 3.01
SHROOM4Q9ULL8 CHEK2-202ENST00000348295 1771 ntTSL 5 BASIC33.86■■■■□ 3.01
SHROOM4Q9ULL8 MORN1-203ENST00000378531 1798 ntAPPRIS P3 TSL 2 BASIC33.86■■■■□ 3.01
SHROOM4Q9ULL8 ARSE-201ENST00000381134 1853 ntAPPRIS P1 TSL 1 (best) BASIC33.86■■■■□ 3.01
SHROOM4Q9ULL8 IGFALS-202ENST00000415638 2136 ntTSL 2 BASIC33.86■■■■□ 3.01
SHROOM4Q9ULL8 ZNF211-204ENST00000347302 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC33.86■■■■□ 3.01
SHROOM4Q9ULL8 PRDM14-201ENST00000276594 2344 ntAPPRIS P1 TSL 1 (best) BASIC33.86■■■■□ 3.01
SHROOM4Q9ULL8 GMCL1P1-201ENST00000463439 1581 ntBASIC33.85■■■■□ 3.01
SHROOM4Q9ULL8 C11orf58-201ENST00000228136 2049 ntAPPRIS P1 TSL 1 (best) BASIC33.85■■■■□ 3.01
SHROOM4Q9ULL8 ZIC4-212ENST00000484399 1774 ntAPPRIS P1 TSL 2 BASIC33.85■■■■□ 3.01
SHROOM4Q9ULL8 CNNM4-201ENST00000377075 4800 ntAPPRIS P1 TSL 1 (best) BASIC33.85■■■■□ 3.01
SHROOM4Q9ULL8 PLAUR-201ENST00000221264 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC33.85■■■■□ 3.01
SHROOM4Q9ULL8 SMIM29-206ENST00000476320 1297 ntAPPRIS P1 TSL 2 BASIC33.85■■■■□ 3.01
SHROOM4Q9ULL8 AC007192.2-201ENST00000600364 463 ntTSL 5 BASIC33.85■■■■□ 3.01
SHROOM4Q9ULL8 HSD17B1-202ENST00000585807 4982 ntAPPRIS P3 TSL 1 (best) BASIC33.85■■■■□ 3.01
SHROOM4Q9ULL8 KMT5B-206ENST00000405515 2869 ntTSL 5 BASIC33.85■■■■□ 3.01
SHROOM4Q9ULL8 REPS1-203ENST00000409812 2511 ntTSL 1 (best) BASIC33.85■■■■□ 3.01
SHROOM4Q9ULL8 CARHSP1-219ENST00000618335 2972 ntAPPRIS P1 TSL 4 BASIC33.85■■■■□ 3.01
SHROOM4Q9ULL8 RASSF1-210ENST00000616212 1842 ntTSL 2 BASIC33.85■■■■□ 3.01
SHROOM4Q9ULL8 VAV1-204ENST00000596764 2775 ntTSL 2 BASIC33.85■■■■□ 3.01
SHROOM4Q9ULL8 NPNT-203ENST00000427316 2481 ntAPPRIS ALT2 TSL 2 BASIC33.84■■■■□ 3.01
SHROOM4Q9ULL8 SNCG-201ENST00000348795 684 ntTSL 2 BASIC33.84■■■■□ 3.01
SHROOM4Q9ULL8 AC134772.1-202ENST00000435578 549 ntTSL 4 BASIC33.84■■■■□ 3.01
SHROOM4Q9ULL8 AC024592.3-202ENST00000586349 506 ntTSL 2 BASIC33.84■■■■□ 3.01
SHROOM4Q9ULL8 RAB34-226ENST00000636772 1180 ntTSL 5 BASIC33.84■■■■□ 3.01
SHROOM4Q9ULL8 CRHR2-207ENST00000471646 2530 ntAPPRIS P1 TSL 1 (best) BASIC33.84■■■■□ 3.01
SHROOM4Q9ULL8 CACNA1H-210ENST00000638323 8048 ntAPPRIS ALT2 TSL 5 BASIC33.84■■■■□ 3.01
SHROOM4Q9ULL8 FCMR-201ENST00000367091 1950 ntAPPRIS P3 TSL 1 (best) BASIC33.84■■■■□ 3.01
SHROOM4Q9ULL8 ZFP69-202ENST00000372706 2871 ntAPPRIS P1 TSL 1 (best) BASIC33.84■■■■□ 3.01
SHROOM4Q9ULL8 HMGCLL1-202ENST00000308161 1314 ntTSL 2 BASIC33.84■■■■□ 3.01
SHROOM4Q9ULL8 POLR2M-206ENST00000494490 1648 ntTSL 5 BASIC33.84■■■■□ 3.01
SHROOM4Q9ULL8 FDXR-205ENST00000544854 1827 ntTSL 2 BASIC33.84■■■■□ 3.01
SHROOM4Q9ULL8 ZNF598-204ENST00000563630 3371 ntAPPRIS P1 TSL 1 (best) BASIC33.83■■■■□ 3.01
SHROOM4Q9ULL8 APOA4-201ENST00000357780 1473 ntAPPRIS P1 TSL 1 (best) BASIC33.83■■■■□ 3.01
SHROOM4Q9ULL8 NXPH2-201ENST00000272641 1052 ntAPPRIS P1 TSL 1 (best) BASIC33.83■■■■□ 3.01
SHROOM4Q9ULL8 CD99-204ENST00000381187 892 ntAPPRIS ALT2 TSL 2 BASIC33.83■■■■□ 3.01
SHROOM4Q9ULL8 ESR1-204ENST00000406599 1251 ntTSL 1 (best) BASIC33.83■■■■□ 3.01
SHROOM4Q9ULL8 XXYLT1-204ENST00000429994 865 ntTSL 3 BASIC33.83■■■■□ 3.01
SHROOM4Q9ULL8 AC093714.2-201ENST00000489626 763 ntTSL 3 BASIC33.83■■■■□ 3.01
SHROOM4Q9ULL8 AC069503.2-201ENST00000546333 576 ntAPPRIS P1 TSL 5 BASIC33.83■■■■□ 3.01
SHROOM4Q9ULL8 AC127496.4-201ENST00000571591 549 ntTSL 4 BASIC33.83■■■■□ 3.01
SHROOM4Q9ULL8 ELL2P1-201ENST00000413990 1906 ntBASIC33.83■■■■□ 3.01
SHROOM4Q9ULL8 HSPB9-201ENST00000565659 1922 ntAPPRIS P1 BASIC33.83■■■■□ 3.01
SHROOM4Q9ULL8 LY6E-207ENST00000520466 1419 ntAPPRIS P2 TSL 2 BASIC33.83■■■■□ 3.01
SHROOM4Q9ULL8 ZDHHC4-206ENST00000405731 1348 ntAPPRIS P1 TSL 1 (best) BASIC33.83■■■■□ 3.01
SHROOM4Q9ULL8 DMRT3-201ENST00000190165 2183 ntAPPRIS P1 TSL 1 (best) BASIC33.83■■■■□ 3.01
SHROOM4Q9ULL8 PSTPIP1-203ENST00000558012 1896 ntAPPRIS P2 TSL 1 (best) BASIC33.83■■■■□ 3.01
SHROOM4Q9ULL8 CRELD1-206ENST00000452070 1778 ntAPPRIS P1 TSL 2 BASIC33.83■■■■□ 3.01
SHROOM4Q9ULL8 PHGDH-209ENST00000641074 1780 ntBASIC33.83■■■■□ 3.01
SHROOM4Q9ULL8 MSLN-207ENST00000566549 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC33.83■■■■□ 3.01
SHROOM4Q9ULL8 ARMC12-201ENST00000288065 1169 ntTSL 1 (best) BASIC33.82■■■■□ 3.01
SHROOM4Q9ULL8 AQP12A-201ENST00000337801 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC33.82■■■■□ 3.01
SHROOM4Q9ULL8 HIST1H2BD-202ENST00000377777 496 ntAPPRIS P1 BASIC33.82■■■■□ 3.01
Retrieved 100 of 98,524 protein–RNA pairs in 40.7 ms