Protein–RNA interactions for Protein: Q9NP79

VTA1, Vacuolar protein sorting-associated protein VTA1 homolog, humanhuman

Predictions only

Length 307 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VTA1Q9NP79 AC040169.1-201ENST00000565382 521 ntBASIC19.98■□□□□ 0.79
VTA1Q9NP79 SPAG7-207ENST00000575142 1094 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
VTA1Q9NP79 TMEM220-203ENST00000578345 559 ntAPPRIS ALT2 TSL 2 BASIC19.98■□□□□ 0.79
VTA1Q9NP79 C1QL3-202ENST00000619991 783 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
VTA1Q9NP79 AC005593.1-201ENST00000624894 515 ntBASIC19.98■□□□□ 0.79
VTA1Q9NP79 SEMA3B-210ENST00000611067 2292 ntAPPRIS ALT2 TSL 1 (best) BASIC19.98■□□□□ 0.79
VTA1Q9NP79 LMCD1-204ENST00000426878 1431 ntTSL 2 BASIC19.98■□□□□ 0.79
VTA1Q9NP79 LY6E-207ENST00000520466 1419 ntAPPRIS P2 TSL 2 BASIC19.98■□□□□ 0.79
VTA1Q9NP79 TRAPPC12-202ENST00000382110 2483 ntAPPRIS P2 TSL 2 BASIC19.98■□□□□ 0.79
VTA1Q9NP79 CRB2-202ENST00000373631 5550 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
VTA1Q9NP79 TLX2-204ENST00000621092 1452 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
VTA1Q9NP79 AC004817.3-201ENST00000602957 2129 ntBASIC19.97■□□□□ 0.79
VTA1Q9NP79 RHOBTB2-201ENST00000251822 5451 ntAPPRIS P3 TSL 1 (best) BASIC19.97■□□□□ 0.79
VTA1Q9NP79 HFE2-204ENST00000475797 1381 ntTSL 2 BASIC19.97■□□□□ 0.79
VTA1Q9NP79 ATP1B1-202ENST00000367816 2608 ntAPPRIS P1 TSL 5 BASIC19.97■□□□□ 0.79
VTA1Q9NP79 LINC01819-201ENST00000422351 2156 ntTSL 5 BASIC19.97■□□□□ 0.79
VTA1Q9NP79 LTBP4-201ENST00000204005 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC19.97■□□□□ 0.79
VTA1Q9NP79 AC138969.1-205ENST00000381497 1552 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
VTA1Q9NP79 LINC00271-201ENST00000421378 1580 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
VTA1Q9NP79 PIP4K2C-202ENST00000422156 1558 ntTSL 2 BASIC19.97■□□□□ 0.79
VTA1Q9NP79 DHDH-201ENST00000221403 1081 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
VTA1Q9NP79 RAMP1-201ENST00000254661 910 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
VTA1Q9NP79 C22orf39-203ENST00000399568 1005 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
VTA1Q9NP79 AL020989.1-201ENST00000422979 469 ntBASIC19.97■□□□□ 0.79
VTA1Q9NP79 AC005104.2-201ENST00000427818 678 ntBASIC19.97■□□□□ 0.79
VTA1Q9NP79 NKTR-203ENST00000442970 646 ntTSL 2 BASIC19.97■□□□□ 0.79
VTA1Q9NP79 HOXB-AS4-202ENST00000480386 566 ntTSL 4 BASIC19.97■□□□□ 0.79
VTA1Q9NP79 H2AFJ-203ENST00000544848 644 ntAPPRIS P1 BASIC19.97■□□□□ 0.79
VTA1Q9NP79 AL121820.2-201ENST00000556301 279 ntTSL 2 BASIC19.97■□□□□ 0.79
VTA1Q9NP79 AP005233.2-201ENST00000561588 372 ntTSL 3 BASIC19.97■□□□□ 0.79
VTA1Q9NP79 AL589182.2-201ENST00000619332 1049 ntBASIC19.97■□□□□ 0.79
VTA1Q9NP79 AGAP4-201ENST00000311652 2715 ntAPPRIS ALT2 TSL 1 (best) BASIC19.97■□□□□ 0.79
VTA1Q9NP79 RIMBP3C-202ENST00000433039 5784 ntAPPRIS P2 BASIC19.97■□□□□ 0.79
VTA1Q9NP79 RIMBP3-201ENST00000619918 6105 ntAPPRIS P1 BASIC19.97■□□□□ 0.79
VTA1Q9NP79 IFRD2-204ENST00000436390 2275 ntAPPRIS P1 TSL 2 BASIC19.97■□□□□ 0.79
VTA1Q9NP79 MED29-202ENST00000594368 1471 ntTSL 2 BASIC19.97■□□□□ 0.79
VTA1Q9NP79 BDKRB1-201ENST00000216629 1687 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
VTA1Q9NP79 SEPT4-201ENST00000317256 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC19.97■□□□□ 0.79
VTA1Q9NP79 ZNF554-201ENST00000317243 2736 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
VTA1Q9NP79 SRPX-202ENST00000432886 1725 ntTSL 2 BASIC19.96■□□□□ 0.79
VTA1Q9NP79 TPGS2-219ENST00000593035 1727 ntAPPRIS ALT2 TSL 2 BASIC19.96■□□□□ 0.79
VTA1Q9NP79 IL17RE-206ENST00000454190 2757 ntTSL 2 BASIC19.96■□□□□ 0.79
VTA1Q9NP79 AGAP4-207ENST00000616763 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC19.96■□□□□ 0.79
VTA1Q9NP79 LGI3-202ENST00000424267 3114 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
VTA1Q9NP79 LINC00894-202ENST00000425602 1597 ntTSL 2 BASIC19.96■□□□□ 0.79
VTA1Q9NP79 RIMBP3B-201ENST00000620804 6105 ntAPPRIS P1 BASIC19.96■□□□□ 0.79
VTA1Q9NP79 ACSM2A-201ENST00000219054 1988 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
VTA1Q9NP79 ELOF1-201ENST00000252445 1019 ntAPPRIS P1 TSL 2 BASIC19.96■□□□□ 0.79
VTA1Q9NP79 PF4-201ENST00000296029 604 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
VTA1Q9NP79 AP001062.3-201ENST00000422357 704 ntTSL 2 BASIC19.96■□□□□ 0.79
VTA1Q9NP79 CRCP-205ENST00000431089 942 ntTSL 2 BASIC19.96■□□□□ 0.79
VTA1Q9NP79 AC012363.1-201ENST00000455707 575 ntTSL 4 BASIC19.96■□□□□ 0.79
VTA1Q9NP79 KNCN-203ENST00000481882 1037 ntAPPRIS ALT2 TSL 5 BASIC19.96■□□□□ 0.79
VTA1Q9NP79 AC136632.2-201ENST00000512891 861 ntBASIC19.96■□□□□ 0.79
VTA1Q9NP79 AC067930.3-201ENST00000524808 701 ntTSL 3 BASIC19.96■□□□□ 0.79
VTA1Q9NP79 AC243773.2-203ENST00000612281 640 ntTSL 3 BASIC19.96■□□□□ 0.79
VTA1Q9NP79 STMN3-202ENST00000540534 2351 ntTSL 2 BASIC19.96■□□□□ 0.79
VTA1Q9NP79 GABRB2-206ENST00000520240 2030 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
VTA1Q9NP79 PPP1R3F-202ENST00000376188 2443 ntTSL 2 BASIC19.96■□□□□ 0.79
VTA1Q9NP79 FOXD2-201ENST00000334793 4675 ntAPPRIS P1 BASIC19.96■□□□□ 0.79
VTA1Q9NP79 KRT24-201ENST00000264651 1881 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
VTA1Q9NP79 ILF3-217ENST00000589998 2622 ntTSL 2 BASIC19.96■□□□□ 0.79
VTA1Q9NP79 DHRS7-212ENST00000611054 1321 ntTSL 5 BASIC19.96■□□□□ 0.79
VTA1Q9NP79 SLC29A2-201ENST00000311161 2262 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
VTA1Q9NP79 ALDH5A1-201ENST00000348925 2266 ntAPPRIS P4 TSL 1 (best) BASIC19.96■□□□□ 0.79
VTA1Q9NP79 SORCS3-201ENST00000369699 5530 ntAPPRIS P1 TSL 5 BASIC19.96■□□□□ 0.79
VTA1Q9NP79 AL445238.1-203ENST00000606050 1525 ntTSL 2 BASIC19.96■□□□□ 0.79
VTA1Q9NP79 SPTBN4-207ENST00000595535 6105 ntTSL 5 BASIC19.96■□□□□ 0.79
VTA1Q9NP79 ZNF296-201ENST00000303809 1744 ntAPPRIS P2 TSL 1 (best) BASIC19.96■□□□□ 0.79
VTA1Q9NP79 KCNS2-201ENST00000287042 5219 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
VTA1Q9NP79 CDK13-202ENST00000340829 5066 ntAPPRIS ALT1 TSL 1 (best) BASIC19.96■□□□□ 0.79
VTA1Q9NP79 KLHL23-201ENST00000272797 2087 ntAPPRIS P1 TSL 2 BASIC19.95■□□□□ 0.78
VTA1Q9NP79 VIM-201ENST00000224237 1868 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
VTA1Q9NP79 NSUN5-201ENST00000252594 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC19.95■□□□□ 0.78
VTA1Q9NP79 TMEM59-202ENST00000371337 600 ntTSL 2 BASIC19.95■□□□□ 0.78
VTA1Q9NP79 HDAC11-202ENST00000402259 1000 ntTSL 3 BASIC19.95■□□□□ 0.78
VTA1Q9NP79 CENPM-203ENST00000402338 1002 ntTSL 2 BASIC19.95■□□□□ 0.78
VTA1Q9NP79 UPF3AP3-201ENST00000420996 769 ntBASIC19.95■□□□□ 0.78
VTA1Q9NP79 LDLRAD2-203ENST00000543870 1180 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
VTA1Q9NP79 AC025259.3-201ENST00000564531 542 ntTSL 3 BASIC19.95■□□□□ 0.78
VTA1Q9NP79 BORCS8-206ENST00000585679 801 ntTSL 3 BASIC19.95■□□□□ 0.78
VTA1Q9NP79 LRRC23-215ENST00000622489 1061 ntTSL 5 BASIC19.95■□□□□ 0.78
VTA1Q9NP79 ADAD1-203ENST00000388725 1918 ntTSL 2 BASIC19.95■□□□□ 0.78
VTA1Q9NP79 TDRP-203ENST00000523656 2622 ntTSL 5 BASIC19.95■□□□□ 0.78
VTA1Q9NP79 AL096828.2-201ENST00000567259 1965 ntBASIC19.95■□□□□ 0.78
VTA1Q9NP79 SIRPAP1-201ENST00000448467 1770 ntBASIC19.95■□□□□ 0.78
VTA1Q9NP79 CRELD1-206ENST00000452070 1778 ntAPPRIS P1 TSL 2 BASIC19.95■□□□□ 0.78
VTA1Q9NP79 AURKA-202ENST00000347343 2248 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
VTA1Q9NP79 PCBP3-206ENST00000400314 2202 ntAPPRIS P2 TSL 5 BASIC19.95■□□□□ 0.78
VTA1Q9NP79 PLIN5-201ENST00000381848 2470 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
VTA1Q9NP79 FCGRT-202ENST00000426395 1559 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
VTA1Q9NP79 AL049757.1-201ENST00000616842 1596 ntBASIC19.95■□□□□ 0.78
VTA1Q9NP79 TMEM8A-204ENST00000431232 3691 ntAPPRIS P2 TSL 1 (best) BASIC19.95■□□□□ 0.78
VTA1Q9NP79 SULT1A1-204ENST00000395609 1871 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
VTA1Q9NP79 AZIN2-203ENST00000373441 1443 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
VTA1Q9NP79 KCNQ5-201ENST00000342056 6688 ntAPPRIS ALT1 TSL 5 BASIC19.94■□□□□ 0.78
VTA1Q9NP79 CSF3-202ENST00000331769 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC19.94■□□□□ 0.78
VTA1Q9NP79 RGS20-203ENST00000344277 1667 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
VTA1Q9NP79 MAEA-219ENST00000514708 1945 ntTSL 2 BASIC19.94■□□□□ 0.78
VTA1Q9NP79 BMS1P4-202ENST00000584747 1716 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
Retrieved 100 of 98,524 protein–RNA pairs in 27 ms