Protein–RNA interactions for Protein: Q4VC31

CCDC58, Coiled-coil domain-containing protein 58, humanhuman

Predictions only

Length 144 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC58Q4VC31 AC108860.2-201ENST00000562760 2183 ntBASIC16.09■□□□□ 0.17
CCDC58Q4VC31 UNC13A-205ENST00000551649 6052 ntAPPRIS ALT2 TSL 5 BASIC16.08■□□□□ 0.17
CCDC58Q4VC31 PIP5K1A-207ENST00000441902 2297 ntTSL 2 BASIC16.08■□□□□ 0.17
CCDC58Q4VC31 CAPN1-201ENST00000279247 3007 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
CCDC58Q4VC31 CBS-202ENST00000359624 2353 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
CCDC58Q4VC31 CBSL-203ENST00000618024 2353 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
CCDC58Q4VC31 LAT2-204ENST00000398475 2453 ntAPPRIS P2 TSL 1 (best) BASIC16.08■□□□□ 0.17
CCDC58Q4VC31 HARS-201ENST00000307633 1780 ntTSL 2 BASIC16.08■□□□□ 0.17
CCDC58Q4VC31 PTGER3-208ENST00000370932 1841 ntAPPRIS ALT2 TSL 5 BASIC16.08■□□□□ 0.17
CCDC58Q4VC31 TSKS-201ENST00000246801 1883 ntAPPRIS P2 TSL 1 (best) BASIC16.08■□□□□ 0.17
CCDC58Q4VC31 ATP2C1-218ENST00000510168 5067 ntAPPRIS ALT1 TSL 5 BASIC16.08■□□□□ 0.16
CCDC58Q4VC31 TBC1D20-201ENST00000354200 4466 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
CCDC58Q4VC31 FDX2-207ENST00000494368 584 ntTSL 4 BASIC16.08■□□□□ 0.16
CCDC58Q4VC31 RNA5SP413-201ENST00000516373 109 ntBASIC16.08■□□□□ 0.16
CCDC58Q4VC31 FAM86C2P-201ENST00000525180 435 ntTSL 4 BASIC16.08■□□□□ 0.16
CCDC58Q4VC31 IGHMBP2-205ENST00000539224 785 ntTSL 3 BASIC16.08■□□□□ 0.16
CCDC58Q4VC31 MMAB-206ENST00000540016 945 ntTSL 3 BASIC16.08■□□□□ 0.16
CCDC58Q4VC31 RN7SL471P-201ENST00000580476 299 ntBASIC16.08■□□□□ 0.16
CCDC58Q4VC31 CR392000.1-201ENST00000624770 1228 ntBASIC16.08■□□□□ 0.16
CCDC58Q4VC31 SLK-202ENST00000369755 7766 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
CCDC58Q4VC31 PRSS50-202ENST00000315170 1372 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
CCDC58Q4VC31 TRAK2-202ENST00000430254 1436 ntTSL 2 BASIC16.08■□□□□ 0.16
CCDC58Q4VC31 KIF16B-201ENST00000354981 5261 ntAPPRIS P3 TSL 1 (best) BASIC16.08■□□□□ 0.16
CCDC58Q4VC31 TRIM24-201ENST00000343526 8410 ntAPPRIS P3 TSL 1 (best) BASIC16.08■□□□□ 0.16
CCDC58Q4VC31 FAM118A-202ENST00000405673 1612 ntTSL 5 BASIC16.08■□□□□ 0.16
CCDC58Q4VC31 APBB1-210ENST00000530885 1626 ntTSL 2 BASIC16.08■□□□□ 0.16
CCDC58Q4VC31 TBC1D3P2-202ENST00000577902 1649 ntBASIC16.08■□□□□ 0.16
CCDC58Q4VC31 OGFOD2-211ENST00000538628 1696 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
CCDC58Q4VC31 FAM111A-204ENST00000528737 6189 ntAPPRIS P1 TSL 2 BASIC16.08■□□□□ 0.16
CCDC58Q4VC31 CD40-202ENST00000372285 1729 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
CCDC58Q4VC31 SYNCRIP-202ENST00000369622 3023 ntAPPRIS P3 TSL 1 (best) BASIC16.08■□□□□ 0.16
CCDC58Q4VC31 ORAI2-205ENST00000478730 5531 ntAPPRIS P1 TSL 2 BASIC16.08■□□□□ 0.16
CCDC58Q4VC31 PHTF1-205ENST00000393357 3244 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
CCDC58Q4VC31 GAB3-203ENST00000424127 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
CCDC58Q4VC31 RAB11FIP5-205ENST00000486777 6120 ntTSL 5 BASIC16.07■□□□□ 0.16
CCDC58Q4VC31 ROCK2-209ENST00000616279 6401 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
CCDC58Q4VC31 RUNX2-201ENST00000359524 5390 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
CCDC58Q4VC31 XKR4-203ENST00000622811 3907 ntAPPRIS P1 TSL 5 BASIC16.07■□□□□ 0.16
CCDC58Q4VC31 REL-202ENST00000394479 2398 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
CCDC58Q4VC31 RNF19A-201ENST00000341084 4285 ntAPPRIS P1 TSL 5 BASIC16.07■□□□□ 0.16
CCDC58Q4VC31 PAPD5-203ENST00000561678 2916 ntTSL 5 BASIC16.07■□□□□ 0.16
CCDC58Q4VC31 ACSL4-201ENST00000340800 5333 ntAPPRIS P4 TSL 5 BASIC16.07■□□□□ 0.16
CCDC58Q4VC31 TERT-202ENST00000334602 3210 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
CCDC58Q4VC31 ACOT8-201ENST00000217455 1168 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
CCDC58Q4VC31 C15orf48-201ENST00000344300 875 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
CCDC58Q4VC31 TMEM240-201ENST00000378733 718 ntAPPRIS P1 TSL 2 BASIC16.07■□□□□ 0.16
CCDC58Q4VC31 UBE2F-203ENST00000409633 837 ntTSL 3 BASIC16.07■□□□□ 0.16
CCDC58Q4VC31 ZNF302-209ENST00000507959 854 ntTSL 2 BASIC16.07■□□□□ 0.16
CCDC58Q4VC31 ZNF580-203ENST00000545125 1025 ntAPPRIS P1 TSL 3 BASIC16.07■□□□□ 0.16
CCDC58Q4VC31 AP000692.2-201ENST00000608391 879 ntBASIC16.07■□□□□ 0.16
CCDC58Q4VC31 MIR6786-201ENST00000616843 113 ntBASIC16.07■□□□□ 0.16
CCDC58Q4VC31 AVL9-209ENST00000640103 1367 ntTSL 5 BASIC16.07■□□□□ 0.16
CCDC58Q4VC31 TPPP3-204ENST00000562206 1410 ntAPPRIS P1 TSL 2 BASIC16.07■□□□□ 0.16
CCDC58Q4VC31 SLBP-201ENST00000318386 1635 ntAPPRIS ALT1 TSL 3 BASIC16.07■□□□□ 0.16
CCDC58Q4VC31 GPAT2P1-201ENST00000444924 1672 ntBASIC16.07■□□□□ 0.16
CCDC58Q4VC31 AC012615.6-201ENST00000593201 1697 ntTSL 2 BASIC16.07■□□□□ 0.16
CCDC58Q4VC31 SYT17-207ENST00000568115 1721 ntTSL 5 BASIC16.07■□□□□ 0.16
CCDC58Q4VC31 SLC3A2-201ENST00000338663 1904 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
CCDC58Q4VC31 PLCD3-212ENST00000619929 6107 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
CCDC58Q4VC31 CCDC112-205ENST00000506442 2145 ntAPPRIS ALT2 TSL 2 BASIC16.07■□□□□ 0.16
CCDC58Q4VC31 LCK-201ENST00000333070 2166 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
CCDC58Q4VC31 ZSCAN10-207ENST00000575108 2247 ntTSL 2 BASIC16.07■□□□□ 0.16
CCDC58Q4VC31 LRRN4-201ENST00000378858 2692 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
CCDC58Q4VC31 RBCK1-202ENST00000356286 2774 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
CCDC58Q4VC31 SUPT20H-203ENST00000360252 2843 ntAPPRIS P3 TSL 1 (best) BASIC16.07■□□□□ 0.16
CCDC58Q4VC31 GRIN2C-202ENST00000347612 2929 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
CCDC58Q4VC31 PPP1R21-206ENST00000449090 3049 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
CCDC58Q4VC31 LRRC3-201ENST00000291592 5869 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
CCDC58Q4VC31 CHST14-201ENST00000306243 3574 ntAPPRIS P1 BASIC16.06■□□□□ 0.16
CCDC58Q4VC31 RASL10B-201ENST00000603017 3205 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
CCDC58Q4VC31 PIAS3-201ENST00000369298 2761 ntTSL 5 BASIC16.06■□□□□ 0.16
CCDC58Q4VC31 GABARAPL1-201ENST00000266458 1957 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
CCDC58Q4VC31 CDC25B-202ENST00000340833 1978 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
CCDC58Q4VC31 A4GALT-202ENST00000381278 1935 ntAPPRIS P1 TSL 5 BASIC16.06■□□□□ 0.16
CCDC58Q4VC31 LINC00511-201ENST00000453722 1716 ntTSL 2 BASIC16.06■□□□□ 0.16
CCDC58Q4VC31 SIGIRR-201ENST00000332725 1639 ntAPPRIS P1 TSL 2 BASIC16.06■□□□□ 0.16
CCDC58Q4VC31 CFC1-202ENST00000615342 1554 ntTSL 5 BASIC16.06■□□□□ 0.16
CCDC58Q4VC31 CFC1B-202ENST00000619050 1554 ntTSL 5 BASIC16.06■□□□□ 0.16
CCDC58Q4VC31 RAB33B-201ENST00000305626 4562 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
CCDC58Q4VC31 CYP51A1P1-201ENST00000492267 1507 ntBASIC16.06■□□□□ 0.16
CCDC58Q4VC31 SYCE1L-201ENST00000378644 858 ntAPPRIS P2 TSL 5 BASIC16.06■□□□□ 0.16
CCDC58Q4VC31 ABCC5-211ENST00000446941 883 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
CCDC58Q4VC31 B3GAT3P1-201ENST00000471720 806 ntBASIC16.06■□□□□ 0.16
CCDC58Q4VC31 AC011506.1-201ENST00000474329 610 ntBASIC16.06■□□□□ 0.16
CCDC58Q4VC31 STAC3-202ENST00000546246 1014 ntTSL 2 BASIC16.06■□□□□ 0.16
CCDC58Q4VC31 ISG20-210ENST00000560741 800 ntAPPRIS P1 TSL 5 BASIC16.06■□□□□ 0.16
CCDC58Q4VC31 FCMR-210ENST00000628511 1055 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
CCDC58Q4VC31 PIEZO1-201ENST00000301015 8072 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
CCDC58Q4VC31 KHNYN-202ENST00000553935 3359 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
CCDC58Q4VC31 SNHG15-202ENST00000577700 3116 ntTSL 2 BASIC16.06■□□□□ 0.16
CCDC58Q4VC31 CD34-202ENST00000356522 2874 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
CCDC58Q4VC31 SYBU-230ENST00000532779 2765 ntAPPRIS ALT2 TSL 2 BASIC16.06■□□□□ 0.16
CCDC58Q4VC31 MOGS-205ENST00000452063 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
CCDC58Q4VC31 MYOC-201ENST00000037502 2095 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
CCDC58Q4VC31 SP100-208ENST00000427101 1922 ntTSL 2 BASIC16.06■□□□□ 0.16
CCDC58Q4VC31 GUCA1A-201ENST00000053469 1874 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
CCDC58Q4VC31 AC060780.1-201ENST00000635600 1782 ntTSL 5 BASIC16.05■□□□□ 0.16
CCDC58Q4VC31 CEBPG-201ENST00000284000 4109 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
CCDC58Q4VC31 TOX2-205ENST00000423191 1709 ntTSL 2 BASIC16.05■□□□□ 0.16
CCDC58Q4VC31 HOXB6-201ENST00000225648 1660 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 26.5 ms