Protein–RNA interactions for Protein: P56524

HDAC4, Histone deacetylase 4, humanhuman

Predictions only

Length 1,084 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4P56524 AC027682.4-201ENST00000605277 798 ntTSL 5 BASIC18.75■□□□□ 0.59
HDAC4P56524 STIM2-212ENST00000639640 2241 ntAPPRIS P3 TSL 1 (best) BASIC18.75■□□□□ 0.59
HDAC4P56524 SYNE4-201ENST00000324444 1354 ntAPPRIS P3 TSL 5 BASIC18.75■□□□□ 0.59
HDAC4P56524 AC004832.3-202ENST00000439838 1470 ntAPPRIS P1 TSL 2 BASIC18.75■□□□□ 0.59
HDAC4P56524 PTP4A3-202ENST00000349124 2710 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
HDAC4P56524 INVS-203ENST00000374921 1654 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
HDAC4P56524 NRXN1-220ENST00000611589 1857 ntTSL 5 BASIC18.75■□□□□ 0.59
HDAC4P56524 FXYD6-204ENST00000526014 2171 ntAPPRIS P2 TSL 1 (best) BASIC18.75■□□□□ 0.59
HDAC4P56524 PNPO-201ENST00000225573 2256 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
HDAC4P56524 MMAB-204ENST00000537236 1342 ntTSL 3 BASIC18.74■□□□□ 0.59
HDAC4P56524 UBC-206ENST00000538617 1303 ntTSL 5 BASIC18.74■□□□□ 0.59
HDAC4P56524 AC005332.1-201ENST00000577698 1310 ntBASIC18.74■□□□□ 0.59
HDAC4P56524 IFIH1-202ENST00000421365 1617 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
HDAC4P56524 RAD51-203ENST00000423169 1611 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
HDAC4P56524 FDXR-203ENST00000420580 1705 ntTSL 2 BASIC18.74■□□□□ 0.59
HDAC4P56524 KLHDC3-201ENST00000244670 1903 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
HDAC4P56524 MCCC1-215ENST00000629669 2316 ntTSL 5 BASIC18.74■□□□□ 0.59
HDAC4P56524 C16orf45-201ENST00000300006 2404 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
HDAC4P56524 B3GALT5-206ENST00000615480 2617 ntAPPRIS P1 TSL 2 BASIC18.74■□□□□ 0.59
HDAC4P56524 IQGAP2-201ENST00000274364 5844 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
HDAC4P56524 DDX17-211ENST00000640332 2190 ntAPPRIS P3 TSL 1 (best) BASIC18.74■□□□□ 0.59
HDAC4P56524 DDX17-212ENST00000640668 2196 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
HDAC4P56524 SYNM-204ENST00000594047 6407 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
HDAC4P56524 WDR25-202ENST00000402312 1969 ntAPPRIS P1 TSL 2 BASIC18.74■□□□□ 0.59
HDAC4P56524 KRT16P6-201ENST00000417510 1873 ntTSL 5 BASIC18.74■□□□□ 0.59
HDAC4P56524 BPGM-203ENST00000418040 1870 ntAPPRIS P1 TSL 5 BASIC18.74■□□□□ 0.59
HDAC4P56524 MOCS2-202ENST00000396954 1785 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
HDAC4P56524 CERCAM-202ENST00000372842 5201 ntAPPRIS ALT2 TSL 5 BASIC18.74■□□□□ 0.59
HDAC4P56524 AC055811.2-201ENST00000427497 1693 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
HDAC4P56524 RABAC1-201ENST00000222008 821 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
HDAC4P56524 SFTPD-201ENST00000372292 1281 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
HDAC4P56524 ISCU-202ENST00000392807 1069 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
HDAC4P56524 TSPY12P-201ENST00000421279 868 ntBASIC18.74■□□□□ 0.59
HDAC4P56524 ISCU-203ENST00000431221 799 ntTSL 2 BASIC18.74■□□□□ 0.59
HDAC4P56524 CNP-204ENST00000472031 1019 ntTSL 2 BASIC18.74■□□□□ 0.59
HDAC4P56524 PTK2-216ENST00000519881 863 ntTSL 3 BASIC18.74■□□□□ 0.59
HDAC4P56524 AC079031.1-201ENST00000542627 1035 ntTSL 3 BASIC18.74■□□□□ 0.59
HDAC4P56524 AL449423.1-201ENST00000578935 435 ntTSL 3 BASIC18.74■□□□□ 0.59
HDAC4P56524 FXYD7-203ENST00000586063 456 ntAPPRIS ALT2 TSL 3 BASIC18.74■□□□□ 0.59
HDAC4P56524 FCGRT-210ENST00000596975 1054 ntTSL 5 BASIC18.74■□□□□ 0.59
HDAC4P56524 RABAC1-208ENST00000601078 728 ntTSL 3 BASIC18.74■□□□□ 0.59
HDAC4P56524 AC009154.2-201ENST00000621177 724 ntBASIC18.74■□□□□ 0.59
HDAC4P56524 CAPN1-201ENST00000279247 3007 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
HDAC4P56524 MAPK9-207ENST00000452135 4815 ntAPPRIS P5 TSL 5 BASIC18.74■□□□□ 0.59
HDAC4P56524 BIN1-208ENST00000376113 1832 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
HDAC4P56524 CA7-202ENST00000394069 1713 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
HDAC4P56524 AHCYL2-201ENST00000325006 5056 ntAPPRIS P3 TSL 1 (best) BASIC18.74■□□□□ 0.59
HDAC4P56524 PANX1-202ENST00000436171 2750 ntAPPRIS ALT1 TSL 1 (best) BASIC18.74■□□□□ 0.59
HDAC4P56524 TMEM82-201ENST00000375782 1520 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
HDAC4P56524 TLK2-203ENST00000346027 3449 ntAPPRIS P3 TSL 1 (best) BASIC18.74■□□□□ 0.59
HDAC4P56524 AP003717.1-202ENST00000537019 1412 ntTSL 5 BASIC18.74■□□□□ 0.59
HDAC4P56524 RAB11FIP2-202ENST00000369199 6119 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
HDAC4P56524 HDAC10-202ENST00000349505 1950 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
HDAC4P56524 GALNT14-202ENST00000349752 2733 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
HDAC4P56524 TFCP2-204ENST00000548115 1862 ntTSL 5 BASIC18.73■□□□□ 0.59
HDAC4P56524 DKK1-201ENST00000373970 1790 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
HDAC4P56524 OLFM2-203ENST00000590841 1665 ntTSL 2 BASIC18.73■□□□□ 0.59
HDAC4P56524 SLC22A23-203ENST00000406686 5658 ntAPPRIS P2 TSL 5 BASIC18.73■□□□□ 0.59
HDAC4P56524 ANKRD13B-209ENST00000614878 2670 ntAPPRIS P1 TSL 5 BASIC18.73■□□□□ 0.59
HDAC4P56524 CDK2AP2-201ENST00000301488 1378 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
HDAC4P56524 MAEA-219ENST00000514708 1945 ntTSL 2 BASIC18.73■□□□□ 0.59
HDAC4P56524 AKR1A1-214ENST00000621846 1360 ntAPPRIS P1 TSL 5 BASIC18.73■□□□□ 0.59
HDAC4P56524 PPAN-P2RY11-201ENST00000393796 2385 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
HDAC4P56524 CACNA1A-225ENST00000636389 8137 ntAPPRIS ALT2 TSL 5 BASIC18.73■□□□□ 0.59
HDAC4P56524 ZNF414-201ENST00000255616 1178 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
HDAC4P56524 BAALC-202ENST00000306391 243 ntTSL 5 BASIC18.73■□□□□ 0.59
HDAC4P56524 ZNF575-201ENST00000314228 1298 ntAPPRIS P1 TSL 2 BASIC18.73■□□□□ 0.59
HDAC4P56524 BAALC-204ENST00000330955 222 ntTSL 5 BASIC18.73■□□□□ 0.59
HDAC4P56524 GPX4-201ENST00000354171 919 ntAPPRIS P2 TSL 1 (best) BASIC18.73■□□□□ 0.59
HDAC4P56524 DDT-202ENST00000398344 713 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
HDAC4P56524 DDT-203ENST00000403754 569 ntTSL 3 BASIC18.73■□□□□ 0.59
HDAC4P56524 DDT-206ENST00000430101 573 ntTSL 2 BASIC18.73■□□□□ 0.59
HDAC4P56524 LINC02106-201ENST00000506534 606 ntTSL 2 BASIC18.73■□□□□ 0.59
HDAC4P56524 KRT18P35-201ENST00000510488 1269 ntBASIC18.73■□□□□ 0.59
HDAC4P56524 CD320-202ENST00000537716 1119 ntTSL 2 BASIC18.73■□□□□ 0.59
HDAC4P56524 AC087388.1-201ENST00000571370 1112 ntBASIC18.73■□□□□ 0.59
HDAC4P56524 EEF2KMT-206ENST00000587133 873 ntAPPRIS ALT2 TSL 3 BASIC18.73■□□□□ 0.59
HDAC4P56524 AC011498.5-201ENST00000592027 486 ntBASIC18.73■□□□□ 0.59
HDAC4P56524 SCOC-208ENST00000510586 2193 ntAPPRIS ALT1 TSL 5 BASIC18.73■□□□□ 0.59
HDAC4P56524 RAB17-201ENST00000264601 1966 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
HDAC4P56524 SULT1A1-204ENST00000395609 1871 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
HDAC4P56524 MACF1-233ENST00000602421 1423 ntTSL 2 BASIC18.73■□□□□ 0.59
HDAC4P56524 NRG2-205ENST00000361474 3020 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
HDAC4P56524 HSD17B12-201ENST00000278353 2571 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
HDAC4P56524 PITPNM2-209ENST00000546049 1793 ntTSL 5 BASIC18.73■□□□□ 0.59
HDAC4P56524 AC020916.1-201ENST00000587762 1774 ntBASIC18.73■□□□□ 0.59
HDAC4P56524 MSANTD1-201ENST00000438480 2922 ntAPPRIS P3 TSL 5 BASIC18.73■□□□□ 0.59
HDAC4P56524 SNX27-203ENST00000368843 7197 ntAPPRIS P3 TSL 1 (best) BASIC18.73■□□□□ 0.59
HDAC4P56524 KLHL31-201ENST00000370905 5743 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
HDAC4P56524 MYZAP-201ENST00000267853 2361 ntAPPRIS P3 TSL 1 (best) BASIC18.73■□□□□ 0.59
HDAC4P56524 IGF2-207ENST00000434045 1583 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
HDAC4P56524 SLC22A7-201ENST00000372574 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
HDAC4P56524 GPANK1-202ENST00000375895 1800 ntAPPRIS P1 TSL 5 BASIC18.72■□□□□ 0.59
HDAC4P56524 TMED3-201ENST00000299705 1475 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
HDAC4P56524 DDX31-201ENST00000310532 2408 ntTSL 2 BASIC18.72■□□□□ 0.59
HDAC4P56524 GPSM2-201ENST00000264126 3032 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
HDAC4P56524 NCOA6-207ENST00000616167 3271 ntAPPRIS ALT2 TSL 5 BASIC18.72■□□□□ 0.59
HDAC4P56524 SPSB4-201ENST00000310546 2908 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
HDAC4P56524 TRIM15-207ENST00000376694 2214 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
HDAC4P56524 RBCK1-203ENST00000382181 2208 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 37.7 ms