Protein–RNA interactions for Protein: O75056

SDC3, Syndecan-3, humanhuman

Predictions only

Length 442 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3O75056 TIGD6-202ENST00000515406 2429 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
SDC3O75056 ZNF213-202ENST00000416391 2996 ntAPPRIS P1 TSL 5 BASIC17.5■□□□□ 0.39
SDC3O75056 PSTK-201ENST00000368887 1705 ntAPPRIS P2 TSL 1 (best) BASIC17.5■□□□□ 0.39
SDC3O75056 SEPT6-202ENST00000354228 1576 ntAPPRIS P4 TSL 1 (best) BASIC17.5■□□□□ 0.39
SDC3O75056 C5orf30-203ENST00000515669 1573 ntAPPRIS P1 TSL 3 BASIC17.5■□□□□ 0.39
SDC3O75056 MEGF9-201ENST00000373930 6298 ntAPPRIS P1 TSL 2 BASIC17.5■□□□□ 0.39
SDC3O75056 TOR2A-205ENST00000463577 2211 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
SDC3O75056 PGAP3-206ENST00000579146 2220 ntTSL 2 BASIC17.5■□□□□ 0.39
SDC3O75056 MIEF2-202ENST00000395703 718 ntTSL 3 BASIC17.5■□□□□ 0.39
SDC3O75056 KIRREL3-AS3-201ENST00000404882 831 ntBASIC17.5■□□□□ 0.39
SDC3O75056 DMKN-206ENST00000418261 1257 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
SDC3O75056 DYNC1LI2-202ENST00000440564 1145 ntTSL 2 BASIC17.5■□□□□ 0.39
SDC3O75056 CMC2-212ENST00000565650 671 ntAPPRIS P1 TSL 2 BASIC17.5■□□□□ 0.39
SDC3O75056 BLOC1S6-214ENST00000567461 1052 ntTSL 2 BASIC17.5■□□□□ 0.39
SDC3O75056 NKAPP1-205ENST00000585790 367 ntBASIC17.5■□□□□ 0.39
SDC3O75056 AC107896.1-201ENST00000593212 548 ntTSL 4 BASIC17.5■□□□□ 0.39
SDC3O75056 PSMA6-216ENST00000627895 484 ntTSL 5 BASIC17.5■□□□□ 0.39
SDC3O75056 IQSEC2-210ENST00000639161 936 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
SDC3O75056 MEF2B-201ENST00000409224 1683 ntTSL 2 BASIC17.5■□□□□ 0.39
SDC3O75056 TMUB2-213ENST00000589856 1505 ntTSL 2 BASIC17.5■□□□□ 0.39
SDC3O75056 ZNF598-204ENST00000563630 3371 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
SDC3O75056 TMEM151A-201ENST00000327259 2562 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
SDC3O75056 NSUN5P2-201ENST00000388955 1789 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
SDC3O75056 ETV4-201ENST00000319349 2429 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
SDC3O75056 SLC12A5-210ENST00000616202 2445 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
SDC3O75056 MICU3-201ENST00000318063 3992 ntAPPRIS P2 TSL 1 (best) BASIC17.5■□□□□ 0.39
SDC3O75056 SEC22C-202ENST00000273156 1608 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
SDC3O75056 MXD3-202ENST00000427908 2269 ntTSL 2 BASIC17.5■□□□□ 0.39
SDC3O75056 ISL2-201ENST00000290759 1881 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
SDC3O75056 AC004832.3-202ENST00000439838 1470 ntAPPRIS P1 TSL 2 BASIC17.5■□□□□ 0.39
SDC3O75056 SLC22A1-203ENST00000457470 1452 ntTSL 5 BASIC17.5■□□□□ 0.39
SDC3O75056 DPH6-AS1-201ENST00000501169 1477 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
SDC3O75056 IFNL4-204ENST00000634967 1493 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
SDC3O75056 BCR-201ENST00000305877 7082 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
SDC3O75056 PPP1R7-202ENST00000272983 1954 ntTSL 2 BASIC17.49■□□□□ 0.39
SDC3O75056 NOTCH2NL-204ENST00000579793 1954 ntAPPRIS ALT2 TSL 2 BASIC17.49■□□□□ 0.39
SDC3O75056 TMEM216-201ENST00000334888 1306 ntAPPRIS ALT2 TSL 2 BASIC17.49■□□□□ 0.39
SDC3O75056 AC027312.1-201ENST00000523591 1571 ntTSL 5 BASIC17.49■□□□□ 0.39
SDC3O75056 ABHD13-201ENST00000375898 5338 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
SDC3O75056 ADAM33-203ENST00000379861 3674 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
SDC3O75056 STX17-212ENST00000534052 2424 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
SDC3O75056 CPQ-201ENST00000220763 1947 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
SDC3O75056 PCDHA2-203ENST00000526136 5254 ntAPPRIS P2 TSL 1 (best) BASIC17.49■□□□□ 0.39
SDC3O75056 LLGL2-203ENST00000392550 3509 ntAPPRIS P2 TSL 1 (best) BASIC17.49■□□□□ 0.39
SDC3O75056 BX323043.1-201ENST00000641006 1765 ntBASIC17.49■□□□□ 0.39
SDC3O75056 DBNDD2-204ENST00000372712 1537 ntAPPRIS P1 TSL 5 BASIC17.49■□□□□ 0.39
SDC3O75056 AP001062.3-201ENST00000422357 704 ntTSL 2 BASIC17.49■□□□□ 0.39
SDC3O75056 AC007967.3-201ENST00000434308 558 ntBASIC17.49■□□□□ 0.39
SDC3O75056 TSPY3-202ENST00000440483 414 ntTSL 5 BASIC17.49■□□□□ 0.39
SDC3O75056 SMIM29-206ENST00000476320 1297 ntAPPRIS P1 TSL 2 BASIC17.49■□□□□ 0.39
SDC3O75056 AMACR-208ENST00000512079 858 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
SDC3O75056 IGHV3-22-201ENST00000520721 359 ntBASIC17.49■□□□□ 0.39
SDC3O75056 FAU-209ENST00000531743 697 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
SDC3O75056 MED16-213ENST00000616387 1078 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
SDC3O75056 AL139288.1-201ENST00000623748 933 ntBASIC17.49■□□□□ 0.39
SDC3O75056 CAND2-206ENST00000626378 333 ntTSL 5 BASIC17.49■□□□□ 0.39
SDC3O75056 ZIC3-202ENST00000370606 1968 ntTSL 5 BASIC17.49■□□□□ 0.39
SDC3O75056 TRABD-201ENST00000303434 2329 ntAPPRIS P3 TSL 1 (best) BASIC17.49■□□□□ 0.39
SDC3O75056 SERPINE2-206ENST00000447280 1716 ntTSL 2 BASIC17.49■□□□□ 0.39
SDC3O75056 HCK-202ENST00000375852 2082 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
SDC3O75056 ZNF692-204ENST00000451251 2065 ntAPPRIS ALT2 TSL 2 BASIC17.49■□□□□ 0.39
SDC3O75056 ANKS1A-201ENST00000360359 6347 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
SDC3O75056 C6orf223-202ENST00000439969 2757 ntTSL 2 BASIC17.49■□□□□ 0.39
SDC3O75056 PNCK-203ENST00000370145 1455 ntTSL 2 BASIC17.49■□□□□ 0.39
SDC3O75056 TLK2-202ENST00000343388 3227 ntAPPRIS ALT1 TSL 1 (best) BASIC17.49■□□□□ 0.39
SDC3O75056 SENP6-202ENST00000370010 4644 ntAPPRIS P3 TSL 1 (best) BASIC17.49■□□□□ 0.39
SDC3O75056 FOXP3-201ENST00000376197 1326 ntTSL 2 BASIC17.48■□□□□ 0.39
SDC3O75056 GAS6-201ENST00000327773 2490 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
SDC3O75056 PTPRJ-207ENST00000613246 7851 ntAPPRIS ALT2 TSL 5 BASIC17.48■□□□□ 0.39
SDC3O75056 GAREM2-201ENST00000401533 4161 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
SDC3O75056 ENTPD8-202ENST00000371506 2222 ntAPPRIS P1 TSL 5 BASIC17.48■□□□□ 0.39
SDC3O75056 SDCBP2-201ENST00000339987 1404 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
SDC3O75056 ATP1B1-201ENST00000367815 1883 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
SDC3O75056 CACNB3-202ENST00000536187 1872 ntTSL 2 BASIC17.48■□□□□ 0.39
SDC3O75056 PDXK-219ENST00000621478 1967 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
SDC3O75056 PRODH-215ENST00000610940 2405 ntAPPRIS P3 TSL 1 (best) BASIC17.48■□□□□ 0.39
SDC3O75056 MTA1-207ENST00000435036 2888 ntTSL 5 BASIC17.48■□□□□ 0.39
SDC3O75056 TXNRD3-203ENST00000524230 2950 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
SDC3O75056 NOP14-202ENST00000398071 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
SDC3O75056 AC135782.1-201ENST00000537498 2154 ntTSL 2 BASIC17.48■□□□□ 0.39
SDC3O75056 GUK1-202ENST00000366716 940 ntAPPRIS P3 TSL 1 (best) BASIC17.48■□□□□ 0.39
SDC3O75056 FAM220CP-201ENST00000395253 831 ntBASIC17.48■□□□□ 0.39
SDC3O75056 AP001107.6-201ENST00000526655 516 ntTSL 3 BASIC17.48■□□□□ 0.39
SDC3O75056 EEF1D-238ENST00000531621 840 ntTSL 3 BASIC17.48■□□□□ 0.39
SDC3O75056 AL589182.1-202ENST00000548416 533 ntTSL 4 BASIC17.48■□□□□ 0.39
SDC3O75056 DCTPP1-204ENST00000568434 853 ntTSL 2 BASIC17.48■□□□□ 0.39
SDC3O75056 MTDHP4-201ENST00000600287 670 ntBASIC17.48■□□□□ 0.39
SDC3O75056 VAV1-201ENST00000304076 2825 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
SDC3O75056 ZC3H12D-201ENST00000409806 5791 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
SDC3O75056 REEP4-202ENST00000334530 1476 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
SDC3O75056 ERI1-203ENST00000519292 2107 ntAPPRIS P1 TSL 2 BASIC17.48■□□□□ 0.39
SDC3O75056 HES1-201ENST00000232424 1578 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
SDC3O75056 DMAP1-201ENST00000315913 1552 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
SDC3O75056 HMCES-201ENST00000383463 2515 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
SDC3O75056 SLC5A10-205ENST00000417251 1984 ntTSL 2 BASIC17.48■□□□□ 0.39
SDC3O75056 LRCH1-201ENST00000311191 4710 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
SDC3O75056 HTD2-201ENST00000461393 1508 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
SDC3O75056 RPH3A-203ENST00000543106 2581 ntAPPRIS ALT2 TSL 2 BASIC17.47■□□□□ 0.39
SDC3O75056 SLC27A1-204ENST00000598424 2681 ntTSL 2 BASIC17.47■□□□□ 0.39
SDC3O75056 JMJD6-202ENST00000397625 1603 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 47 ms