Protein–RNA interactions for Protein: O60224

SSX4, Protein SSX4, humanhuman

Predictions only

Length 188 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSX4O60224 CD7-201ENST00000312648 1281 ntAPPRIS P2 TSL 1 (best) BASIC16.31■□□□□ 0.2
SSX4O60224 UQCRQ-201ENST00000378665 586 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
SSX4O60224 PSEN1-203ENST00000394157 1249 ntTSL 2 BASIC16.31■□□□□ 0.2
SSX4O60224 KRTAP5-3-201ENST00000399685 899 ntAPPRIS P1 BASIC16.31■□□□□ 0.2
SSX4O60224 AC007731.5-201ENST00000429594 644 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
SSX4O60224 AC007663.1-201ENST00000438948 1240 ntBASIC16.31■□□□□ 0.2
SSX4O60224 FAHD2CP-202ENST00000443258 893 ntTSL 3 BASIC16.31■□□□□ 0.2
SSX4O60224 AC063952.2-201ENST00000498792 1227 ntBASIC16.31■□□□□ 0.2
SSX4O60224 AP002807.1-202ENST00000526897 791 ntTSL 2 BASIC16.31■□□□□ 0.2
SSX4O60224 RAP1B-229ENST00000543393 874 ntTSL 3 BASIC16.31■□□□□ 0.2
SSX4O60224 ABCD4-228ENST00000557588 763 ntTSL 3 BASIC16.31■□□□□ 0.2
SSX4O60224 AKTIP-212ENST00000570004 1162 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
SSX4O60224 PAX7-201ENST00000375375 2260 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
SSX4O60224 SLC27A6-201ENST00000262462 3219 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
SSX4O60224 EPHA10-201ENST00000319637 2050 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
SSX4O60224 SQLE-201ENST00000265896 2961 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
SSX4O60224 NFATC4-211ENST00000554344 2955 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
SSX4O60224 FAM208B-201ENST00000328090 8626 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
SSX4O60224 TSSK2-201ENST00000399635 1816 ntAPPRIS P1 BASIC16.31■□□□□ 0.2
SSX4O60224 NFATC4-215ENST00000554661 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
SSX4O60224 MSI2-203ENST00000416426 1714 ntTSL 2 BASIC16.31■□□□□ 0.2
SSX4O60224 ISM2-207ENST00000493585 1739 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
SSX4O60224 FADS2-209ENST00000521849 1703 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
SSX4O60224 CDH6-205ENST00000514738 2569 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
SSX4O60224 KLF3-201ENST00000261438 5122 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
SSX4O60224 SYNC-202ENST00000409190 3398 ntAPPRIS P3 TSL 2 BASIC16.3■□□□□ 0.2
SSX4O60224 TRIM11-202ENST00000366699 2511 ntTSL 2 BASIC16.3■□□□□ 0.2
SSX4O60224 STARD3-209ENST00000544210 1666 ntTSL 2 BASIC16.3■□□□□ 0.2
SSX4O60224 MBIP-203ENST00000416007 1648 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
SSX4O60224 BEND4-201ENST00000502486 8765 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
SSX4O60224 BCS1L-201ENST00000359273 1454 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
SSX4O60224 CYP2D6-201ENST00000359033 1433 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
SSX4O60224 WDR13-201ENST00000218056 2124 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
SSX4O60224 WWTR1-201ENST00000360632 2103 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
SSX4O60224 SPAG6-202ENST00000376603 2770 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
SSX4O60224 CDK4-201ENST00000257904 2076 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
SSX4O60224 OCSTAMP-201ENST00000279028 2043 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
SSX4O60224 WASF1-205ENST00000392587 2675 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
SSX4O60224 UNC13A-206ENST00000552293 5314 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
SSX4O60224 PTGES2-214ENST00000617202 1344 ntTSL 5 BASIC16.3■□□□□ 0.2
SSX4O60224 ADCY8-201ENST00000286355 5938 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
SSX4O60224 POC1A-202ENST00000394970 1999 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
SSX4O60224 MAPT-205ENST00000351559 5811 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
SSX4O60224 GUK1-204ENST00000366721 689 ntTSL 3 BASIC16.3■□□□□ 0.2
SSX4O60224 TRPT1-202ENST00000394546 1058 ntAPPRIS ALT1 TSL 5 BASIC16.3■□□□□ 0.2
SSX4O60224 RNF152P1-201ENST00000397754 604 ntBASIC16.3■□□□□ 0.2
SSX4O60224 SHBG-203ENST00000416273 1042 ntAPPRIS ALT2 TSL 3 BASIC16.3■□□□□ 0.2
SSX4O60224 AC012618.3-202ENST00000440004 472 ntTSL 4 BASIC16.3■□□□□ 0.2
SSX4O60224 AC092647.4-201ENST00000457211 535 ntBASIC16.3■□□□□ 0.2
SSX4O60224 PSMB5-205ENST00000493471 1117 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
SSX4O60224 SNCB-205ENST00000510387 730 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
SSX4O60224 MOK-234ENST00000524370 1165 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
SSX4O60224 TRPT1-210ENST00000541278 941 ntTSL 2 BASIC16.3■□□□□ 0.2
SSX4O60224 SHBG-215ENST00000575903 1196 ntTSL 3 BASIC16.3■□□□□ 0.2
SSX4O60224 ELAC2-212ENST00000578071 579 ntTSL 4 BASIC16.3■□□□□ 0.2
SSX4O60224 AC010653.2-201ENST00000623505 997 ntBASIC16.3■□□□□ 0.2
SSX4O60224 AC009542.2-201ENST00000637483 1189 ntTSL 5 BASIC16.3■□□□□ 0.2
SSX4O60224 FBXL22-204ENST00000638704 729 ntAPPRIS ALT2 TSL 2 BASIC16.3■□□□□ 0.2
SSX4O60224 AC064853.5-201ENST00000641976 258 ntAPPRIS P1 BASIC16.3■□□□□ 0.2
SSX4O60224 CXADR-201ENST00000284878 6254 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
SSX4O60224 SULT1A1-204ENST00000395609 1871 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
SSX4O60224 LAT2-204ENST00000398475 2453 ntAPPRIS P2 TSL 1 (best) BASIC16.3■□□□□ 0.2
SSX4O60224 CAPN1-201ENST00000279247 3007 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
SSX4O60224 GDF5-201ENST00000374369 2383 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
SSX4O60224 MUTYH-202ENST00000355498 1776 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
SSX4O60224 ATXN2-201ENST00000377617 4702 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
SSX4O60224 ARHGEF16-202ENST00000378373 2211 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
SSX4O60224 PIAS3-201ENST00000369298 2761 ntTSL 5 BASIC16.3■□□□□ 0.2
SSX4O60224 MEX3C-204ENST00000616921 3269 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
SSX4O60224 RIC8A-201ENST00000325207 2702 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
SSX4O60224 DNAJC28-201ENST00000314399 1625 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
SSX4O60224 FAM13C-204ENST00000468840 2110 ntAPPRIS ALT2 TSL 2 BASIC16.3■□□□□ 0.2
SSX4O60224 NEO1-202ENST00000339362 7342 ntAPPRIS P3 TSL 5 BASIC16.3■□□□□ 0.2
SSX4O60224 BAIAP2L2-201ENST00000332536 2065 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
SSX4O60224 LUC7L-202ENST00000337351 2097 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
SSX4O60224 KDELC1-201ENST00000376004 2060 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
SSX4O60224 MXD4-201ENST00000337190 4056 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
SSX4O60224 DPYSL4-202ENST00000368627 1545 ntTSL 5 BASIC16.29■□□□□ 0.2
SSX4O60224 GUCY1A2-202ENST00000347596 2532 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
SSX4O60224 MATN3-201ENST00000407540 2524 ntAPPRIS P2 TSL 1 (best) BASIC16.29■□□□□ 0.2
SSX4O60224 ELF2-204ENST00000394235 4012 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
SSX4O60224 RSPH6A-201ENST00000221538 2456 ntAPPRIS P2 TSL 1 (best) BASIC16.29■□□□□ 0.2
SSX4O60224 IFNLR1-202ENST00000327575 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
SSX4O60224 GRIN2C-202ENST00000347612 2929 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
SSX4O60224 MEST-202ENST00000341441 2443 ntAPPRIS ALT1 TSL 1 (best) BASIC16.29■□□□□ 0.2
SSX4O60224 AANAT-201ENST00000250615 1913 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
SSX4O60224 MPP2-206ENST00000518766 1896 ntTSL 2 BASIC16.29■□□□□ 0.2
SSX4O60224 DAG1-201ENST00000308775 5522 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
SSX4O60224 FO681492.1-203ENST00000622861 1362 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
SSX4O60224 EIF3L-202ENST00000406934 2282 ntTSL 2 BASIC16.29■□□□□ 0.2
SSX4O60224 MARVELD3-202ENST00000299952 2214 ntAPPRIS ALT2 TSL 2 BASIC16.29■□□□□ 0.2
SSX4O60224 HDAC11-AS1-201ENST00000424112 515 ntTSL 2 BASIC16.29■□□□□ 0.2
SSX4O60224 TSPY17P-201ENST00000450329 467 ntBASIC16.29■□□□□ 0.2
SSX4O60224 PRKCB-209ENST00000498058 480 ntTSL 3 BASIC16.29■□□□□ 0.2
SSX4O60224 FAM86C2P-201ENST00000525180 435 ntTSL 4 BASIC16.29■□□□□ 0.2
SSX4O60224 C16orf74-207ENST00000602914 761 ntAPPRIS ALT2 TSL 2 BASIC16.29■□□□□ 0.2
SSX4O60224 FP565260.3-205ENST00000620481 816 ntTSL 5 BASIC16.29■□□□□ 0.2
SSX4O60224 ASRGL1-211ENST00000628829 1161 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
SSX4O60224 CCNYL1-201ENST00000295414 3767 ntTSL 5 BASIC16.29■□□□□ 0.2
SSX4O60224 FAM184A-201ENST00000338891 4141 ntAPPRIS P4 TSL 1 (best) BASIC16.29■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 26.5 ms