Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 HOXA11-AS-205ENST00000522863 1723 ntTSL 5 BASIC15.3■□□□□ 0.04
SDCBPO00560 MVB12A-204ENST00000528515 686 ntTSL 5 BASIC15.3■□□□□ 0.04
SDCBPO00560 MLF2-210ENST00000542154 838 ntAPPRIS P1 TSL 5 BASIC15.3■□□□□ 0.04
SDCBPO00560 C2orf69P3-201ENST00000565542 1120 ntBASIC15.3■□□□□ 0.04
SDCBPO00560 AC005943.1-201ENST00000585937 1002 ntAPPRIS P1 TSL 3 BASIC15.3■□□□□ 0.04
SDCBPO00560 C16orf74-202ENST00000602583 1237 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
SDCBPO00560 AC034236.2-201ENST00000606662 1610 ntBASIC15.3■□□□□ 0.04
SDCBPO00560 RAPGEFL1-212ENST00000620260 3855 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
SDCBPO00560 MUM1-216ENST00000627377 2235 ntAPPRIS ALT2 TSL 5 BASIC15.3■□□□□ 0.04
SDCBPO00560 HCK-210ENST00000629881 1969 ntAPPRIS ALT2 TSL 2 BASIC15.3■□□□□ 0.04
SDCBPO00560 ZDHHC20-209ENST00000542645 5315 ntAPPRIS ALT2 TSL 2 BASIC15.3■□□□□ 0.04
SDCBPO00560 FAM184A-201ENST00000338891 4141 ntAPPRIS P4 TSL 1 (best) BASIC15.3■□□□□ 0.04
SDCBPO00560 MOB3A-201ENST00000357066 3391 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
SDCBPO00560 ADAMTSL5-201ENST00000330475 2857 ntAPPRIS P1 TSL 2 BASIC15.3■□□□□ 0.04
SDCBPO00560 NPAS3-202ENST00000356141 2802 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
SDCBPO00560 ISM1-201ENST00000262487 2593 ntAPPRIS P1 TSL 5 BASIC15.3■□□□□ 0.04
SDCBPO00560 DTNB-209ENST00000407038 2294 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
SDCBPO00560 AD000864.1-201ENST00000624076 2295 ntBASIC15.29■□□□□ 0.04
SDCBPO00560 SMOC1-201ENST00000361956 2040 ntAPPRIS ALT1 TSL 1 (best) BASIC15.29■□□□□ 0.04
SDCBPO00560 AC079922.2-201ENST00000457336 2022 ntTSL 2 BASIC15.29■□□□□ 0.04
SDCBPO00560 SLC26A11-212ENST00000572725 1862 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
SDCBPO00560 AC116565.2-201ENST00000637674 1854 ntTSL 2 BASIC15.29■□□□□ 0.04
SDCBPO00560 AMMECR1-201ENST00000262844 5504 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
SDCBPO00560 TMEM65-201ENST00000297632 9029 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
SDCBPO00560 SLC35A3-224ENST00000640732 1777 ntTSL 5 BASIC15.29■□□□□ 0.04
SDCBPO00560 DNM2-201ENST00000355667 3541 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
SDCBPO00560 SIPA1-209ENST00000534313 3521 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
SDCBPO00560 HLA-DQB1-204ENST00000399084 1734 ntAPPRIS P1 BASIC15.29■□□□□ 0.04
SDCBPO00560 ZNF140-207ENST00000440550 1663 ntTSL 2 BASIC15.29■□□□□ 0.04
SDCBPO00560 ENOPH1-202ENST00000505846 1689 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
SDCBPO00560 AC012615.6-201ENST00000593201 1697 ntTSL 2 BASIC15.29■□□□□ 0.04
SDCBPO00560 LUC7L-221ENST00000629543 1520 ntTSL 5 BASIC15.29■□□□□ 0.04
SDCBPO00560 SYT6-205ENST00000609117 4424 ntTSL 5 BASIC15.29■□□□□ 0.04
SDCBPO00560 CCNC-207ENST00000518714 1426 ntTSL 5 BASIC15.29■□□□□ 0.04
SDCBPO00560 AC027031.2-201ENST00000521369 1318 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
SDCBPO00560 COX5A-201ENST00000322347 1268 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
SDCBPO00560 TCTEX1D2-201ENST00000325318 673 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
SDCBPO00560 RHOC-203ENST00000369632 1026 ntAPPRIS P1 TSL 3 BASIC15.29■□□□□ 0.04
SDCBPO00560 AL731557.1-201ENST00000425264 744 ntTSL 3 BASIC15.29■□□□□ 0.04
SDCBPO00560 AL445685.1-201ENST00000425802 762 ntTSL 3 BASIC15.29■□□□□ 0.04
SDCBPO00560 TAPBP-236ENST00000456592 817 ntTSL 5 BASIC15.29■□□□□ 0.04
SDCBPO00560 AP003041.3-201ENST00000527151 707 ntBASIC15.29■□□□□ 0.04
SDCBPO00560 AL355075.4-201ENST00000554988 638 ntBASIC15.29■□□□□ 0.04
SDCBPO00560 FITM1-202ENST00000559294 800 ntBASIC15.29■□□□□ 0.04
SDCBPO00560 AL158151.3-201ENST00000599172 696 ntTSL 5 BASIC15.29■□□□□ 0.04
SDCBPO00560 FLYWCH1-203ENST00000416288 4963 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
SDCBPO00560 C4orf50-202ENST00000531445 6860 ntAPPRIS P5 TSL 5 BASIC15.29■□□□□ 0.04
SDCBPO00560 ZSCAN10-207ENST00000575108 2247 ntTSL 2 BASIC15.29■□□□□ 0.04
SDCBPO00560 GLB1-202ENST00000307377 2018 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
SDCBPO00560 ASB1-201ENST00000264607 6994 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
SDCBPO00560 PHKA1-205ENST00000541944 5944 ntAPPRIS ALT1 TSL 1 (best) BASIC15.29■□□□□ 0.04
SDCBPO00560 BRD2-201ENST00000374825 4894 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
SDCBPO00560 ATP6AP2-214ENST00000636287 1904 ntAPPRIS ALT2 TSL 5 BASIC15.29■□□□□ 0.04
SDCBPO00560 NPTN-202ENST00000351217 2817 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
SDCBPO00560 ABCC3-202ENST00000427699 1881 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
SDCBPO00560 GUCA1A-201ENST00000053469 1874 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
SDCBPO00560 PPP3CA-201ENST00000323055 4519 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
SDCBPO00560 HARS-201ENST00000307633 1780 ntTSL 2 BASIC15.29■□□□□ 0.04
SDCBPO00560 SLC10A3-202ENST00000369649 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
SDCBPO00560 ZNF281-201ENST00000294740 4891 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
SDCBPO00560 CSTB-204ENST00000640406 2354 ntTSL 2 BASIC15.28■□□□□ 0.04
SDCBPO00560 AC036111.1-201ENST00000533973 1582 ntBASIC15.28■□□□□ 0.04
SDCBPO00560 SPRYD7-201ENST00000361840 3053 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
SDCBPO00560 EGFL7-204ENST00000406555 1529 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
SDCBPO00560 ATXN2-201ENST00000377617 4702 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
SDCBPO00560 DHCR7-201ENST00000355527 2666 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
SDCBPO00560 RABGAP1L-204ENST00000357444 2605 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
SDCBPO00560 STRN4-204ENST00000539396 2608 ntTSL 2 BASIC15.28■□□□□ 0.04
SDCBPO00560 KDM6A-202ENST00000382899 5789 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
SDCBPO00560 HAUS1-201ENST00000282058 1125 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
SDCBPO00560 CALML5-201ENST00000380332 859 ntAPPRIS P1 BASIC15.28■□□□□ 0.04
SDCBPO00560 AL139246.2-201ENST00000456687 1297 ntTSL 5 BASIC15.28■□□□□ 0.04
SDCBPO00560 AL353719.1-201ENST00000566847 864 ntBASIC15.28■□□□□ 0.04
SDCBPO00560 MIR4674-201ENST00000582457 87 ntBASIC15.28■□□□□ 0.04
SDCBPO00560 MIR4497-201ENST00000583208 89 ntBASIC15.28■□□□□ 0.04
SDCBPO00560 CD209-209ENST00000601256 994 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
SDCBPO00560 SNX21-213ENST00000614929 587 ntTSL 5 BASIC15.28■□□□□ 0.04
SDCBPO00560 AC215522.2-202ENST00000633163 1143 ntTSL 5 BASIC15.28■□□□□ 0.04
SDCBPO00560 AC116562.4-202ENST00000641738 218 ntBASIC15.28■□□□□ 0.04
SDCBPO00560 EPB41L3-207ENST00000545076 3190 ntAPPRIS ALT2 TSL 2 BASIC15.28■□□□□ 0.04
SDCBPO00560 AC022211.2-201ENST00000585075 2527 ntBASIC15.28■□□□□ 0.04
SDCBPO00560 HPGD-213ENST00000541923 2920 ntTSL 2 BASIC15.28■□□□□ 0.04
SDCBPO00560 A4GALT-203ENST00000401850 2321 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
SDCBPO00560 NIFK-201ENST00000285814 1734 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
SDCBPO00560 PTPRK-218ENST00000525459 1722 ntTSL 2 BASIC15.28■□□□□ 0.04
SDCBPO00560 PIP5K1A-207ENST00000441902 2297 ntTSL 2 BASIC15.28■□□□□ 0.04
SDCBPO00560 ELOVL7-205ENST00000508821 3994 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
SDCBPO00560 PRSS53-201ENST00000280606 2181 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
SDCBPO00560 SLBP-201ENST00000318386 1635 ntAPPRIS ALT1 TSL 3 BASIC15.28■□□□□ 0.04
SDCBPO00560 AP3D1-201ENST00000345016 4870 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
SDCBPO00560 MAP6-202ENST00000434603 4329 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
SDCBPO00560 CASZ1-202ENST00000377022 7936 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
SDCBPO00560 PHKG2-202ENST00000424889 1566 ntTSL 2 BASIC15.28■□□□□ 0.04
SDCBPO00560 FGFR4-207ENST00000502906 2638 ntAPPRIS P4 TSL 1 (best) BASIC15.28■□□□□ 0.04
SDCBPO00560 SATB1-201ENST00000338745 7810 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
SDCBPO00560 CIAO1-203ENST00000488633 1533 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
SDCBPO00560 TXNRD2-218ENST00000542719 2024 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
SDCBPO00560 SLC29A2-206ENST00000546034 2509 ntAPPRIS P1 TSL 5 BASIC15.27■□□□□ 0.04
SDCBPO00560 KSR1-201ENST00000268763 2806 ntAPPRIS ALT2 TSL 5 BASIC15.27■□□□□ 0.04
SDCBPO00560 CAMK2G-205ENST00000372765 1822 ntTSL 5 BASIC15.27■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 32.1 ms