Protein–RNA interactions for Protein: Q96T58

SPEN, Msx2-interacting protein, humanhuman

Known RBP Predictions only

Length 3,664 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SPENQ96T58 KIRREL2-205ENST00000592409 2563 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
SPENQ96T58 COA5-201ENST00000328709 1754 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
SPENQ96T58 C9orf43-202ENST00000374165 2049 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
SPENQ96T58 HTR1E-201ENST00000305344 2052 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
SPENQ96T58 CLDND1-204ENST00000394185 2159 ntAPPRIS P1 TSL 5 BASIC16.1■□□□□ 0.17
SPENQ96T58 MSLN-202ENST00000545450 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
SPENQ96T58 CCZ1-207ENST00000628813 2218 ntTSL 2 BASIC16.1■□□□□ 0.17
SPENQ96T58 ADAMTS16-203ENST00000511368 2682 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
SPENQ96T58 MIB2-231ENST00000518681 3116 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
SPENQ96T58 FGFBP2-201ENST00000259989 1168 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
SPENQ96T58 FAM3D-201ENST00000358781 1319 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
SPENQ96T58 MEF2B-201ENST00000409224 1683 ntTSL 2 BASIC16.1■□□□□ 0.17
SPENQ96T58 PUDP-203ENST00000424830 1334 ntTSL 3 BASIC16.1■□□□□ 0.17
SPENQ96T58 CTBP2-214ENST00000531469 1918 ntAPPRIS P1 TSL 2 BASIC16.1■□□□□ 0.17
SPENQ96T58 RNASEK-207ENST00000552842 595 ntTSL 3 BASIC16.1■□□□□ 0.17
SPENQ96T58 PYCR1-207ENST00000577756 1144 ntTSL 2 BASIC16.1■□□□□ 0.17
SPENQ96T58 AC010336.3-201ENST00000597156 667 ntTSL 2 BASIC16.1■□□□□ 0.17
SPENQ96T58 AXIN2-208ENST00000611991 1019 ntTSL 5 BASIC16.1■□□□□ 0.17
SPENQ96T58 AC132938.5-201ENST00000624980 1813 ntBASIC16.1■□□□□ 0.17
SPENQ96T58 ARRDC2-201ENST00000222250 2503 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
SPENQ96T58 EFEMP2-210ENST00000528176 1504 ntTSL 5 BASIC16.1■□□□□ 0.17
SPENQ96T58 RPA2-202ENST00000373909 1162 ntTSL 3 BASIC16.1■□□□□ 0.17
SPENQ96T58 AP000442.1-201ENST00000533552 769 ntTSL 5 BASIC16.1■□□□□ 0.17
SPENQ96T58 GREM1-201ENST00000560677 623 ntTSL 4 BASIC16.1■□□□□ 0.17
SPENQ96T58 IGFALS-202ENST00000415638 2136 ntTSL 2 BASIC16.1■□□□□ 0.17
SPENQ96T58 FAM234A-202ENST00000301679 1936 ntTSL 2 BASIC16.1■□□□□ 0.17
SPENQ96T58 MAGEA3-203ENST00000598245 1762 ntAPPRIS P1 TSL 2 BASIC16.1■□□□□ 0.17
SPENQ96T58 MAGEA6-204ENST00000616035 1762 ntAPPRIS P1 TSL 5 BASIC16.1■□□□□ 0.17
SPENQ96T58 DMWD-201ENST00000270223 3305 ntAPPRIS P2 TSL 1 (best) BASIC16.1■□□□□ 0.17
SPENQ96T58 STYXL1-208ENST00000451157 1570 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
SPENQ96T58 ANP32E-201ENST00000369114 1048 ntTSL 3 BASIC16.09■□□□□ 0.17
SPENQ96T58 CD99-204ENST00000381187 892 ntAPPRIS ALT2 TSL 2 BASIC16.09■□□□□ 0.17
SPENQ96T58 SH3TC1-202ENST00000382521 829 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
SPENQ96T58 C6orf226-201ENST00000408925 552 ntAPPRIS P1 BASIC16.09■□□□□ 0.17
SPENQ96T58 WDR53-203ENST00000429115 683 ntTSL 2 BASIC16.09■□□□□ 0.17
SPENQ96T58 IFT20-209ENST00000579419 787 ntAPPRIS ALT1 TSL 3 BASIC16.09■□□□□ 0.17
SPENQ96T58 AC004706.3-202ENST00000621574 984 ntBASIC16.09■□□□□ 0.17
SPENQ96T58 XYLT2-203ENST00000507602 2107 ntTSL 2 BASIC16.09■□□□□ 0.17
SPENQ96T58 ABCB8-211ENST00000477092 1596 ntTSL 5 BASIC16.09■□□□□ 0.17
SPENQ96T58 TMEM214-203ENST00000404032 2830 ntTSL 2 BASIC16.09■□□□□ 0.17
SPENQ96T58 AL645939.2-201ENST00000427340 991 ntBASIC16.09■□□□□ 0.17
SPENQ96T58 AL391261.2-201ENST00000554907 773 ntTSL 2 BASIC16.09■□□□□ 0.17
SPENQ96T58 CIPC-205ENST00000555437 566 ntTSL 3 BASIC16.09■□□□□ 0.17
SPENQ96T58 FBF1-204ENST00000586631 621 ntAPPRIS ALT2 TSL 2 BASIC16.09■□□□□ 0.17
SPENQ96T58 DPYSL4-202ENST00000368627 1545 ntTSL 5 BASIC16.09■□□□□ 0.17
SPENQ96T58 ISLR2-210ENST00000565540 2780 ntAPPRIS P1 TSL 4 BASIC16.09■□□□□ 0.17
SPENQ96T58 UNC5CL-202ENST00000373164 1620 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
SPENQ96T58 USP39-202ENST00000409025 1946 ntTSL 5 BASIC16.09■□□□□ 0.17
SPENQ96T58 CERS5-203ENST00000422340 2855 ntAPPRIS ALT2 TSL 2 BASIC16.09■□□□□ 0.17
SPENQ96T58 AC131097.3-201ENST00000413820 1228 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
SPENQ96T58 AC008429.1-203ENST00000518894 548 ntTSL 4 BASIC16.09■□□□□ 0.17
SPENQ96T58 AC105339.3-201ENST00000560043 636 ntBASIC16.09■□□□□ 0.17
SPENQ96T58 AC004771.3-201ENST00000574260 551 ntTSL 4 BASIC16.09■□□□□ 0.17
SPENQ96T58 LINC01128-208ENST00000608189 824 ntTSL 5 BASIC16.09■□□□□ 0.17
SPENQ96T58 CRYL1-202ENST00000382812 1581 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
SPENQ96T58 KDM4B-202ENST00000381759 3058 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
SPENQ96T58 FAM91A1-207ENST00000521166 2706 ntTSL 2 BASIC16.09■□□□□ 0.17
SPENQ96T58 CDKN2C-201ENST00000262662 2904 ntAPPRIS P1 TSL 2 BASIC16.09■□□□□ 0.17
SPENQ96T58 GCH1-207ENST00000622544 2923 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
SPENQ96T58 ANO7L1-203ENST00000602586 1720 ntBASIC16.09■□□□□ 0.17
SPENQ96T58 ZNF517-202ENST00000525105 1383 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
SPENQ96T58 PSMD8-207ENST00000592035 1581 ntTSL 1 (best) BASIC16.08■□□□□ 0.17
SPENQ96T58 C19orf25-203ENST00000585675 1837 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
SPENQ96T58 H3F3C-201ENST00000340398 1057 ntAPPRIS P1 BASIC16.08■□□□□ 0.17
SPENQ96T58 TREML1-203ENST00000437044 647 ntTSL 1 (best) BASIC16.08■□□□□ 0.17
SPENQ96T58 AC116612.1-201ENST00000557144 562 ntTSL 3 BASIC16.08■□□□□ 0.17
SPENQ96T58 AJ003147.2-201ENST00000576468 629 ntTSL 3 BASIC16.08■□□□□ 0.17
SPENQ96T58 AC244517.5-205ENST00000623615 575 ntTSL 4 BASIC16.08■□□□□ 0.17
SPENQ96T58 SLC22A1-203ENST00000457470 1452 ntTSL 5 BASIC16.08■□□□□ 0.17
SPENQ96T58 TMEM161A-202ENST00000450333 1930 ntTSL 2 BASIC16.08■□□□□ 0.17
SPENQ96T58 AGAP5-203ENST00000581191 2779 ntAPPRIS ALT2 TSL 5 BASIC16.08■□□□□ 0.17
SPENQ96T58 PDCD10-201ENST00000392750 2067 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
SPENQ96T58 FBXL18-205ENST00000620087 2076 ntTSL 5 BASIC16.08■□□□□ 0.17
SPENQ96T58 SERHL2-203ENST00000340239 1315 ntTSL 5 BASIC16.08■□□□□ 0.16
SPENQ96T58 ASB6-202ENST00000277459 2180 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
SPENQ96T58 MTDH-203ENST00000519934 2184 ntTSL 5 BASIC16.08■□□□□ 0.16
SPENQ96T58 NXPH2-201ENST00000272641 1052 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
SPENQ96T58 RPL13P5-203ENST00000421824 845 ntTSL 3 BASIC16.08■□□□□ 0.16
SPENQ96T58 DARS-AS1-203ENST00000438432 768 ntTSL 3 BASIC16.08■□□□□ 0.16
SPENQ96T58 COX20P2-201ENST00000452636 358 ntBASIC16.08■□□□□ 0.16
SPENQ96T58 AC004408.1-201ENST00000579256 573 ntTSL 4 BASIC16.08■□□□□ 0.16
SPENQ96T58 AC091812.2-201ENST00000619081 385 ntBASIC16.08■□□□□ 0.16
SPENQ96T58 CCDC78-201ENST00000293889 1611 ntAPPRIS P2 TSL 1 (best) BASIC16.08■□□□□ 0.16
SPENQ96T58 AC125494.1-203ENST00000396799 1622 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
SPENQ96T58 PEPD-203ENST00000436370 1638 ntTSL 2 BASIC16.08■□□□□ 0.16
SPENQ96T58 CSNK1D-204ENST00000398519 1580 ntTSL 5 BASIC16.08■□□□□ 0.16
SPENQ96T58 DHRS2-201ENST00000250383 1705 ntAPPRIS P3 TSL 1 (best) BASIC16.08■□□□□ 0.16
SPENQ96T58 AC097374.2-201ENST00000618617 1306 ntBASIC16.08■□□□□ 0.16
SPENQ96T58 ZNF302-206ENST00000505242 2849 ntAPPRIS P3 TSL 1 (best) BASIC16.08■□□□□ 0.16
SPENQ96T58 SNAP47-202ENST00000366759 2362 ntAPPRIS P3 TSL 1 (best) BASIC16.08■□□□□ 0.16
SPENQ96T58 SNHG11-205ENST00000421599 1046 ntTSL 3 BASIC16.08■□□□□ 0.16
SPENQ96T58 IRF3-204ENST00000442265 315 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
SPENQ96T58 MTERF2-202ENST00000392830 1763 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
SPENQ96T58 FAM13C-204ENST00000468840 2110 ntAPPRIS ALT2 TSL 2 BASIC16.08■□□□□ 0.16
SPENQ96T58 TREX2-201ENST00000330912 2262 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
SPENQ96T58 CEP55-201ENST00000371485 2638 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
SPENQ96T58 GCOM1-201ENST00000380568 1516 ntAPPRIS ALT2 TSL 2 BASIC16.08■□□□□ 0.16
SPENQ96T58 NEIL2-202ENST00000403422 2016 ntTSL 2 BASIC16.08■□□□□ 0.16
SPENQ96T58 AKIRIN2-201ENST00000257787 1662 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
SPENQ96T58 FAM72B-207ENST00000619376 1659 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 69.5 ms