Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 BEAN1-211ENST00000622872 1171 ntAPPRIS P2 TSL 5 BASIC16.95■□□□□ 0.3
PTCHD1Q96NR3 SOD2-206ENST00000452684 2045 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
PTCHD1Q96NR3 HEXB-207ENST00000511181 2021 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
PTCHD1Q96NR3 KCTD15-202ENST00000430256 2555 ntAPPRIS P1 TSL 2 BASIC16.95■□□□□ 0.3
PTCHD1Q96NR3 LMTK2-201ENST00000297293 8946 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
PTCHD1Q96NR3 PRKAR1B-212ENST00000544935 2494 ntAPPRIS P1 TSL 5 BASIC16.95■□□□□ 0.3
PTCHD1Q96NR3 LYSMD4-201ENST00000332728 2847 ntTSL 4 BASIC16.95■□□□□ 0.3
PTCHD1Q96NR3 TSEN34-202ENST00000396383 1548 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
PTCHD1Q96NR3 DDX51-202ENST00000397333 4718 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
PTCHD1Q96NR3 FAM131A-202ENST00000340957 2421 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
PTCHD1Q96NR3 AC105285.1-202ENST00000499322 1866 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
PTCHD1Q96NR3 SNAP91-201ENST00000195649 4434 ntAPPRIS ALT2 TSL 5 BASIC16.95■□□□□ 0.3
PTCHD1Q96NR3 SNAP91-204ENST00000369694 4449 ntAPPRIS P2 TSL 5 BASIC16.95■□□□□ 0.3
PTCHD1Q96NR3 DAP3-214ENST00000471642 1671 ntTSL 5 BASIC16.94■□□□□ 0.3
PTCHD1Q96NR3 B4GALT4-202ENST00000393765 2459 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
PTCHD1Q96NR3 DCAF4-201ENST00000353777 1940 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
PTCHD1Q96NR3 CD276-201ENST00000318424 2738 ntTSL 5 BASIC16.94■□□□□ 0.3
PTCHD1Q96NR3 AC020922.1-201ENST00000591954 3058 ntAPPRIS P1 TSL 5 BASIC16.94■□□□□ 0.3
PTCHD1Q96NR3 KCNH2-203ENST00000430723 2648 ntTSL 5 BASIC16.94■□□□□ 0.3
PTCHD1Q96NR3 ACVRL1-202ENST00000419526 1356 ntTSL 2 BASIC16.94■□□□□ 0.3
PTCHD1Q96NR3 ECHDC1-214ENST00000474289 2443 ntAPPRIS P3 TSL 5 BASIC16.94■□□□□ 0.3
PTCHD1Q96NR3 FIBP-202ENST00000357519 1248 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
PTCHD1Q96NR3 NEURL2-201ENST00000372518 1278 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
PTCHD1Q96NR3 CYHR1-203ENST00000424149 1162 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
PTCHD1Q96NR3 DRAXINP1-201ENST00000437611 948 ntBASIC16.94■□□□□ 0.3
PTCHD1Q96NR3 AC069368.1-202ENST00000437723 750 ntAPPRIS P1 TSL 5 BASIC16.94■□□□□ 0.3
PTCHD1Q96NR3 KRT18P65-201ENST00000439811 1286 ntBASIC16.94■□□□□ 0.3
PTCHD1Q96NR3 LINC00265-3P-201ENST00000447588 903 ntBASIC16.94■□□□□ 0.3
PTCHD1Q96NR3 KRT18P56-201ENST00000507275 550 ntBASIC16.94■□□□□ 0.3
PTCHD1Q96NR3 TPSP2-201ENST00000561760 610 ntBASIC16.94■□□□□ 0.3
PTCHD1Q96NR3 BRICD5-203ENST00000566018 555 ntTSL 2 BASIC16.94■□□□□ 0.3
PTCHD1Q96NR3 C1QTNF1-205ENST00000578229 1294 ntTSL 4 BASIC16.94■□□□□ 0.3
PTCHD1Q96NR3 AC011840.4-201ENST00000578471 627 ntBASIC16.94■□□□□ 0.3
PTCHD1Q96NR3 FCGRT-210ENST00000596975 1054 ntTSL 5 BASIC16.94■□□□□ 0.3
PTCHD1Q96NR3 GPX4-210ENST00000611653 793 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
PTCHD1Q96NR3 EML2-AS1-203ENST00000623430 886 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
PTCHD1Q96NR3 LINC01714-202ENST00000635451 896 ntTSL 5 BASIC16.94■□□□□ 0.3
PTCHD1Q96NR3 IFIH1-202ENST00000421365 1617 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
PTCHD1Q96NR3 AC093010.1-201ENST00000473625 1624 ntBASIC16.94■□□□□ 0.3
PTCHD1Q96NR3 STRA6-209ENST00000563965 2565 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
PTCHD1Q96NR3 ENC1-201ENST00000302351 5520 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
PTCHD1Q96NR3 PRDM12-201ENST00000253008 2476 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
PTCHD1Q96NR3 UBE3A-201ENST00000232165 5051 ntAPPRIS P3 TSL 5 BASIC16.94■□□□□ 0.3
PTCHD1Q96NR3 AC107464.1-203ENST00000468356 2120 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
PTCHD1Q96NR3 PARP16-202ENST00000444347 2352 ntTSL 2 BASIC16.94■□□□□ 0.3
PTCHD1Q96NR3 FAM111A-204ENST00000528737 6189 ntAPPRIS P1 TSL 2 BASIC16.94■□□□□ 0.3
PTCHD1Q96NR3 ZNF470-201ENST00000330619 7151 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
PTCHD1Q96NR3 SERPINF2-202ENST00000382061 2265 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
PTCHD1Q96NR3 BAZ1A-203ENST00000382422 5775 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
PTCHD1Q96NR3 B3GNT2-201ENST00000301998 2763 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
PTCHD1Q96NR3 ITGA6-201ENST00000264107 5618 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
PTCHD1Q96NR3 GNAZ-203ENST00000615612 3333 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
PTCHD1Q96NR3 HARBI1-201ENST00000326737 1967 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
PTCHD1Q96NR3 CLMP-201ENST00000448775 5072 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
PTCHD1Q96NR3 POR-209ENST00000439269 1858 ntTSL 2 BASIC16.93■□□□□ 0.3
PTCHD1Q96NR3 FBXL17-201ENST00000359660 4510 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
PTCHD1Q96NR3 STARD7-AS1-202ENST00000446816 1527 ntTSL 2 BASIC16.93■□□□□ 0.3
PTCHD1Q96NR3 CGB7-201ENST00000377280 918 ntAPPRIS P1 TSL 3 BASIC16.93■□□□□ 0.3
PTCHD1Q96NR3 UBE2E1-AS1-201ENST00000426702 778 ntTSL 3 BASIC16.93■□□□□ 0.3
PTCHD1Q96NR3 IMMP2L-207ENST00000452895 833 ntAPPRIS P1 TSL 5 BASIC16.93■□□□□ 0.3
PTCHD1Q96NR3 TOB2P1-201ENST00000469761 992 ntBASIC16.93■□□□□ 0.3
PTCHD1Q96NR3 AC068472.1-201ENST00000474589 881 ntBASIC16.93■□□□□ 0.3
PTCHD1Q96NR3 COX6C-204ENST00000520271 571 ntAPPRIS P1 TSL 2 BASIC16.93■□□□□ 0.3
PTCHD1Q96NR3 PHB2-207ENST00000542912 1138 ntTSL 5 BASIC16.93■□□□□ 0.3
PTCHD1Q96NR3 CIB2-208ENST00000560618 804 ntTSL 2 BASIC16.93■□□□□ 0.3
PTCHD1Q96NR3 LAT-211ENST00000566177 786 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
PTCHD1Q96NR3 ANAPC11-204ENST00000571024 668 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
PTCHD1Q96NR3 ANAPC11-218ENST00000582222 523 ntTSL 2 BASIC16.93■□□□□ 0.3
PTCHD1Q96NR3 AC104971.2-201ENST00000588144 1209 ntTSL 2 BASIC16.93■□□□□ 0.3
PTCHD1Q96NR3 TMIGD2-202ENST00000595645 1212 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
PTCHD1Q96NR3 GNAS-AS1-203ENST00000598163 548 ntTSL 4 BASIC16.93■□□□□ 0.3
PTCHD1Q96NR3 TXNDC12-205ENST00000610127 806 ntTSL 2 BASIC16.93■□□□□ 0.3
PTCHD1Q96NR3 SETD3-209ENST00000630307 1281 ntTSL 5 BASIC16.93■□□□□ 0.3
PTCHD1Q96NR3 BAG3-201ENST00000369085 2571 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
PTCHD1Q96NR3 AC132938.6-201ENST00000623828 1655 ntBASIC16.93■□□□□ 0.3
PTCHD1Q96NR3 IL15-201ENST00000296545 2472 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
PTCHD1Q96NR3 LINC01700-201ENST00000433952 1598 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
PTCHD1Q96NR3 EMC8-201ENST00000253457 1962 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
PTCHD1Q96NR3 EGFL6-202ENST00000380602 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
PTCHD1Q96NR3 PRKRA-203ENST00000432031 1344 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
PTCHD1Q96NR3 LINC00960-201ENST00000463183 1333 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
PTCHD1Q96NR3 SRSF1-208ENST00000584773 1317 ntTSL 5 BASIC16.93■□□□□ 0.3
PTCHD1Q96NR3 FBXL20-205ENST00000583610 1739 ntAPPRIS P1 TSL 2 BASIC16.93■□□□□ 0.3
PTCHD1Q96NR3 RIN1-205ENST00000530056 2122 ntTSL 2 BASIC16.93■□□□□ 0.3
PTCHD1Q96NR3 GPC2-201ENST00000292377 2532 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
PTCHD1Q96NR3 FLYWCH1P1-201ENST00000460917 1874 ntBASIC16.93■□□□□ 0.3
PTCHD1Q96NR3 ACP5-201ENST00000218758 1630 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
PTCHD1Q96NR3 FBXL3-201ENST00000355619 3503 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
PTCHD1Q96NR3 SERPINE2-201ENST00000258405 2195 ntAPPRIS P3 TSL 1 (best) BASIC16.92■□□□□ 0.3
PTCHD1Q96NR3 RSPO4-201ENST00000217260 2707 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
PTCHD1Q96NR3 BICRA-201ENST00000396720 5739 ntAPPRIS P2 TSL 5 BASIC16.92■□□□□ 0.3
PTCHD1Q96NR3 PCBP4-210ENST00000471622 1784 ntTSL 5 BASIC16.92■□□□□ 0.3
PTCHD1Q96NR3 FAM50B-202ENST00000380274 1932 ntAPPRIS P1 BASIC16.92■□□□□ 0.3
PTCHD1Q96NR3 SP100-208ENST00000427101 1922 ntTSL 2 BASIC16.92■□□□□ 0.3
PTCHD1Q96NR3 ABALON-201ENST00000629058 1903 ntBASIC16.92■□□□□ 0.3
PTCHD1Q96NR3 ACSL6-205ENST00000379246 2622 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
PTCHD1Q96NR3 RNF157-201ENST00000269391 4955 ntAPPRIS P3 TSL 1 (best) BASIC16.92■□□□□ 0.3
PTCHD1Q96NR3 FBXL15-201ENST00000224862 2362 ntAPPRIS P2 TSL 1 (best) BASIC16.92■□□□□ 0.3
PTCHD1Q96NR3 STMN3-202ENST00000540534 2351 ntTSL 2 BASIC16.92■□□□□ 0.3
PTCHD1Q96NR3 E2F2-201ENST00000361729 5191 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 35.7 ms