Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 LARGE2-202ENST00000401752 2516 ntAPPRIS P3 TSL 1 (best) BASIC5.56□□□□□ -1.52
SYNE1Q8NF91 SDF4-201ENST00000263741 2079 ntAPPRIS P3 TSL 1 (best) BASIC5.56□□□□□ -1.52
SYNE1Q8NF91 NDOR1-204ENST00000458322 1829 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
SYNE1Q8NF91 PRMT2-201ENST00000291705 1011 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
SYNE1Q8NF91 MCFD2-208ENST00000409973 821 ntAPPRIS P1 TSL 2 BASIC5.56□□□□□ -1.52
SYNE1Q8NF91 AL591212.1-201ENST00000433646 615 ntTSL 5 BASIC5.56□□□□□ -1.52
SYNE1Q8NF91 PRSS21-202ENST00000450020 1106 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
SYNE1Q8NF91 AC243547.2-201ENST00000616257 234 ntTSL 3 BASIC5.56□□□□□ -1.52
SYNE1Q8NF91 HLA-A-201ENST00000376802 1334 ntBASIC5.56□□□□□ -1.52
SYNE1Q8NF91 OCSTAMP-201ENST00000279028 2043 ntAPPRIS P1 TSL 5 BASIC5.56□□□□□ -1.52
SYNE1Q8NF91 DNAAF2-201ENST00000298292 2963 ntAPPRIS P3 TSL 1 (best) BASIC5.56□□□□□ -1.52
SYNE1Q8NF91 MAPRE1-201ENST00000375571 2623 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
SYNE1Q8NF91 TJP2-202ENST00000377245 4611 ntAPPRIS P4 TSL 1 (best) BASIC5.56□□□□□ -1.52
SYNE1Q8NF91 ANGPTL4-201ENST00000301455 1879 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
SYNE1Q8NF91 ELAVL2-208ENST00000544538 3789 ntAPPRIS P3 TSL 5 BASIC5.56□□□□□ -1.52
SYNE1Q8NF91 GHSR-201ENST00000241256 1172 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
SYNE1Q8NF91 SLC9A3R1-202ENST00000413388 1285 ntTSL 2 BASIC5.56□□□□□ -1.52
SYNE1Q8NF91 KRT16P4-201ENST00000453883 522 ntBASIC5.56□□□□□ -1.52
SYNE1Q8NF91 REXO2-206ENST00000539275 710 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
SYNE1Q8NF91 ZBP1-208ENST00000541799 1041 ntAPPRIS ALT2 TSL 5 BASIC5.56□□□□□ -1.52
SYNE1Q8NF91 PNN-202ENST00000553331 656 ntTSL 3 BASIC5.56□□□□□ -1.52
SYNE1Q8NF91 CLDN7-204ENST00000571881 735 ntTSL 3 BASIC5.56□□□□□ -1.52
SYNE1Q8NF91 MIEN1-205ENST00000577810 806 ntTSL 3 BASIC5.56□□□□□ -1.52
SYNE1Q8NF91 AC008481.3-201ENST00000585656 727 ntAPPRIS P1 TSL 5 BASIC5.56□□□□□ -1.52
SYNE1Q8NF91 Z69720.1-201ENST00000601483 472 ntBASIC5.56□□□□□ -1.52
SYNE1Q8NF91 AL591684.3-201ENST00000605187 298 ntBASIC5.56□□□□□ -1.52
SYNE1Q8NF91 REXO1L6P-202ENST00000619970 1078 ntBASIC5.56□□□□□ -1.52
SYNE1Q8NF91 EARS2-206ENST00000563232 1709 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
SYNE1Q8NF91 ZNF843-203ENST00000618063 1765 ntAPPRIS P2 TSL 1 (best) BASIC5.56□□□□□ -1.52
SYNE1Q8NF91 UBAP1-203ENST00000379186 2524 ntTSL 5 BASIC5.56□□□□□ -1.52
SYNE1Q8NF91 ARFGAP2-229ENST00000627920 2613 ntTSL 2 BASIC5.56□□□□□ -1.52
SYNE1Q8NF91 SLC30A2-202ENST00000374278 3097 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
SYNE1Q8NF91 ZCCHC3-201ENST00000500893 3354 ntAPPRIS P1 BASIC5.56□□□□□ -1.52
SYNE1Q8NF91 MRPS5-201ENST00000272418 1652 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
SYNE1Q8NF91 WDR88-202ENST00000361680 1835 ntAPPRIS ALT2 TSL 1 (best) BASIC5.56□□□□□ -1.52
SYNE1Q8NF91 SEMA3B-202ENST00000418576 1765 ntTSL 2 BASIC5.56□□□□□ -1.52
SYNE1Q8NF91 AC079776.4-201ENST00000511039 504 ntBASIC5.56□□□□□ -1.52
SYNE1Q8NF91 BTNL9-210ENST00000515271 1444 ntTSL 2 BASIC5.56□□□□□ -1.52
SYNE1Q8NF91 TJP2-208ENST00000535702 3984 ntAPPRIS ALT2 TSL 2 BASIC5.56□□□□□ -1.52
SYNE1Q8NF91 STAT5A-207ENST00000546010 3086 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
SYNE1Q8NF91 DIO3OS-212ENST00000557661 1937 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
SYNE1Q8NF91 HOXB1-202ENST00000577092 1414 ntBASIC5.56□□□□□ -1.52
SYNE1Q8NF91 YTHDF3-213ENST00000621820 2363 ntTSL 2 BASIC5.56□□□□□ -1.52
SYNE1Q8NF91 SALL3-205ENST00000575389 3996 ntTSL 5 BASIC5.56□□□□□ -1.52
SYNE1Q8NF91 RELB-201ENST00000221452 2294 ntAPPRIS P2 TSL 1 (best) BASIC5.56□□□□□ -1.52
SYNE1Q8NF91 GPR62-201ENST00000322241 2191 ntAPPRIS P1 BASIC5.56□□□□□ -1.52
SYNE1Q8NF91 RBM34-201ENST00000408888 2054 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
SYNE1Q8NF91 PCDHB11-202ENST00000624887 1973 ntTSL 2 BASIC5.56□□□□□ -1.52
SYNE1Q8NF91 PBX1-222ENST00000627490 1769 ntTSL 2 BASIC5.56□□□□□ -1.52
SYNE1Q8NF91 PAQR4-202ENST00000318782 2793 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
SYNE1Q8NF91 AC012615.3-201ENST00000592884 500 ntTSL 3 BASIC5.56□□□□□ -1.52
SYNE1Q8NF91 FCGRT-210ENST00000596975 1054 ntTSL 5 BASIC5.56□□□□□ -1.52
SYNE1Q8NF91 AL121672.3-201ENST00000608644 468 ntBASIC5.56□□□□□ -1.52
SYNE1Q8NF91 SEMA4C-201ENST00000305476 3545 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
SYNE1Q8NF91 PTOV1-AS1-201ENST00000596521 2155 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
SYNE1Q8NF91 MSANTD1-201ENST00000438480 2922 ntAPPRIS P3 TSL 5 BASIC5.56□□□□□ -1.52
SYNE1Q8NF91 IQCJ-SCHIP1-207ENST00000638749 2633 ntAPPRIS P3 TSL 1 (best) BASIC5.56□□□□□ -1.52
SYNE1Q8NF91 GTF3C5-202ENST00000372097 2406 ntAPPRIS P3 TSL 1 (best) BASIC5.56□□□□□ -1.52
SYNE1Q8NF91 AHRR-204ENST00000506456 2350 ntTSL 2 BASIC5.56□□□□□ -1.52
SYNE1Q8NF91 SERPINB6-207ENST00000612421 1570 ntTSL 2 BASIC5.56□□□□□ -1.52
SYNE1Q8NF91 AC093525.10-201ENST00000625130 1569 ntBASIC5.56□□□□□ -1.52
SYNE1Q8NF91 PBK-203ENST00000522944 1499 ntTSL 2 BASIC5.56□□□□□ -1.52
SYNE1Q8NF91 MPZ-206ENST00000533357 1955 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
SYNE1Q8NF91 AL049795.1-201ENST00000373604 642 ntTSL 3 BASIC5.55□□□□□ -1.52
SYNE1Q8NF91 METTL21A-202ENST00000406927 1103 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
SYNE1Q8NF91 C7orf49-209ENST00000483029 596 ntTSL 2 BASIC5.55□□□□□ -1.52
SYNE1Q8NF91 NOP16-205ENST00000509257 1000 ntTSL 2 BASIC5.55□□□□□ -1.52
SYNE1Q8NF91 BRICD5-203ENST00000566018 555 ntTSL 2 BASIC5.55□□□□□ -1.52
SYNE1Q8NF91 HOXB8-203ENST00000576562 743 ntAPPRIS ALT1 TSL 2 BASIC5.55□□□□□ -1.52
SYNE1Q8NF91 FAM71E1-202ENST00000595790 1225 ntAPPRIS P3 TSL 1 (best) BASIC5.55□□□□□ -1.52
SYNE1Q8NF91 MED16-213ENST00000616387 1078 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
SYNE1Q8NF91 WNT6-201ENST00000233948 1703 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
SYNE1Q8NF91 UMOD-201ENST00000302509 2477 ntAPPRIS P3 TSL 5 BASIC5.55□□□□□ -1.52
SYNE1Q8NF91 MRGPRF-AS1-201ENST00000538407 1490 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
SYNE1Q8NF91 PCDHA7-202ENST00000525929 5221 ntAPPRIS P2 TSL 1 (best) BASIC5.55□□□□□ -1.52
SYNE1Q8NF91 MIR564-202ENST00000385049 94 ntBASIC5.55□□□□□ -1.52
SYNE1Q8NF91 NAT14-202ENST00000587400 416 ntTSL 5 BASIC5.55□□□□□ -1.52
SYNE1Q8NF91 WDR18-202ENST00000585809 1608 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
SYNE1Q8NF91 UMOD-202ENST00000396134 2408 ntAPPRIS ALT2 TSL 2 BASIC5.55□□□□□ -1.52
SYNE1Q8NF91 SURF4-209ENST00000618229 3200 ntTSL 2 BASIC5.55□□□□□ -1.52
SYNE1Q8NF91 FBLN1-201ENST00000262722 2251 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
SYNE1Q8NF91 VSX2-201ENST00000261980 2995 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
SYNE1Q8NF91 LRRC29-201ENST00000393992 1468 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
SYNE1Q8NF91 AC011474.1-201ENST00000582581 2582 ntTSL 2 BASIC5.55□□□□□ -1.52
SYNE1Q8NF91 EVC-201ENST00000264956 6431 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
SYNE1Q8NF91 KRT8P7-201ENST00000533003 1432 ntBASIC5.55□□□□□ -1.52
SYNE1Q8NF91 RASA1-201ENST00000274376 3752 ntAPPRIS P3 TSL 1 (best) BASIC5.55□□□□□ -1.52
SYNE1Q8NF91 RIMBP3C-202ENST00000433039 5784 ntAPPRIS P2 BASIC5.55□□□□□ -1.52
SYNE1Q8NF91 YY1AP1-213ENST00000405763 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC5.55□□□□□ -1.52
SYNE1Q8NF91 BOC-211ENST00000484034 1286 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
SYNE1Q8NF91 DCTPP1-203ENST00000567983 801 ntTSL 5 BASIC5.55□□□□□ -1.52
SYNE1Q8NF91 TPSB2-201ENST00000606293 1165 ntAPPRIS ALT2 TSL 1 (best) BASIC5.55□□□□□ -1.52
SYNE1Q8NF91 AL390719.2-201ENST00000606993 987 ntBASIC5.55□□□□□ -1.52
SYNE1Q8NF91 AL121772.3-201ENST00000610840 674 ntBASIC5.55□□□□□ -1.52
SYNE1Q8NF91 AC124864.1-201ENST00000623408 392 ntBASIC5.55□□□□□ -1.52
SYNE1Q8NF91 NF2-210ENST00000413209 4733 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
SYNE1Q8NF91 MAF-202ENST00000393350 6384 ntAPPRIS ALT2 BASIC5.55□□□□□ -1.52
SYNE1Q8NF91 FICD-204ENST00000552695 3347 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
SYNE1Q8NF91 PFN2-203ENST00000452853 1780 ntAPPRIS ALT1 TSL 1 (best) BASIC5.55□□□□□ -1.52
SYNE1Q8NF91 VAV1-210ENST00000602142 2620 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
Retrieved 100 of 98,524 protein–RNA pairs in 62.5 ms