Protein–RNA interactions for Protein: Q70EL1

USP54, Inactive ubiquitin carboxyl-terminal hydrolase 54, humanhuman

Predictions only

Length 1,684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP54Q70EL1 CDC42EP4-206ENST00000581014 737 ntTSL 5 BASIC23.76■■□□□ 1.39
USP54Q70EL1 AC092902.2-205ENST00000622381 394 ntTSL 5 BASIC23.76■■□□□ 1.39
USP54Q70EL1 PROK2-202ENST00000353065 1549 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
USP54Q70EL1 HPCAL1-206ENST00000613496 1547 ntAPPRIS P1 TSL 3 BASIC23.76■■□□□ 1.39
USP54Q70EL1 TM7SF3-201ENST00000343028 2709 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
USP54Q70EL1 CMTM7-201ENST00000334983 2038 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
USP54Q70EL1 SLC6A9-201ENST00000357730 2168 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
USP54Q70EL1 PRSS36-202ENST00000418068 2446 ntTSL 2 BASIC23.76■■□□□ 1.39
USP54Q70EL1 CISD2-201ENST00000273986 2327 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
USP54Q70EL1 CLN3-203ENST00000357806 1469 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
USP54Q70EL1 NKIRAS2-207ENST00000449471 1461 ntTSL 2 BASIC23.76■■□□□ 1.39
USP54Q70EL1 BTNL9-202ENST00000376841 1626 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
USP54Q70EL1 AP004609.1-201ENST00000498872 1646 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
USP54Q70EL1 TMEM145-201ENST00000301204 1768 ntAPPRIS P2 TSL 2 BASIC23.76■■□□□ 1.39
USP54Q70EL1 TNNT1-201ENST00000291901 967 ntAPPRIS ALT2 TSL 1 (best) BASIC23.76■■□□□ 1.39
USP54Q70EL1 PNRC2-202ENST00000374468 814 ntAPPRIS P1 TSL 2 BASIC23.76■■□□□ 1.39
USP54Q70EL1 WWOX-204ENST00000408984 1227 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
USP54Q70EL1 AL049569.1-201ENST00000446261 636 ntTSL 3 BASIC23.76■■□□□ 1.39
USP54Q70EL1 PP7080-203ENST00000510604 859 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
USP54Q70EL1 POLD4-207ENST00000531239 584 ntTSL 2 BASIC23.76■■□□□ 1.39
USP54Q70EL1 AC012617.1-203ENST00000590845 439 ntTSL 2 BASIC23.76■■□□□ 1.39
USP54Q70EL1 TVP23A-210ENST00000612195 1298 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
USP54Q70EL1 ADAD1-203ENST00000388725 1918 ntTSL 2 BASIC23.76■■□□□ 1.39
USP54Q70EL1 ZMYND11-214ENST00000509513 2065 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
USP54Q70EL1 AC009949.1-201ENST00000623048 1830 ntBASIC23.76■■□□□ 1.39
USP54Q70EL1 AURKA-202ENST00000347343 2248 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
USP54Q70EL1 ALDH2-202ENST00000416293 1572 ntTSL 2 BASIC23.75■■□□□ 1.39
USP54Q70EL1 CAMKK2-207ENST00000404169 2116 ntAPPRIS P4 TSL 1 (best) BASIC23.75■■□□□ 1.39
USP54Q70EL1 TNFRSF14-AS1-205ENST00000449660 1629 ntTSL 2 BASIC23.75■■□□□ 1.39
USP54Q70EL1 PMS1-222ENST00000639501 2506 ntTSL 5 BASIC23.75■■□□□ 1.39
USP54Q70EL1 NCCRP1-201ENST00000339852 1978 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
USP54Q70EL1 SH3TC1-202ENST00000382521 829 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
USP54Q70EL1 AC092384.3-201ENST00000561980 531 ntTSL 4 BASIC23.75■■□□□ 1.39
USP54Q70EL1 MIR4751-201ENST00000578027 74 ntBASIC23.75■■□□□ 1.39
USP54Q70EL1 TMED1-207ENST00000591695 809 ntTSL 5 BASIC23.75■■□□□ 1.39
USP54Q70EL1 MCU-201ENST00000357157 2874 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
USP54Q70EL1 MAFF-202ENST00000407965 2325 ntAPPRIS P1 TSL 2 BASIC23.75■■□□□ 1.39
USP54Q70EL1 ADORA2A-215ENST00000618076 2630 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
USP54Q70EL1 PTHLH-203ENST00000395872 1318 ntAPPRIS ALT1 TSL 5 BASIC23.75■■□□□ 1.39
USP54Q70EL1 SIL1-202ENST00000394817 1923 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
USP54Q70EL1 SDHA-201ENST00000264932 2390 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
USP54Q70EL1 FOXN3-214ENST00000557258 2692 ntAPPRIS P3 TSL 1 (best) BASIC23.75■■□□□ 1.39
USP54Q70EL1 SLC29A2-201ENST00000311161 2262 ntTSL 1 (best) BASIC23.74■■□□□ 1.39
USP54Q70EL1 FLYWCH1P1-201ENST00000460917 1874 ntBASIC23.74■■□□□ 1.39
USP54Q70EL1 AC117500.2-201ENST00000508145 1561 ntTSL 1 (best) BASIC23.74■■□□□ 1.39
USP54Q70EL1 ZNF593-201ENST00000270812 698 ntTSL 2 BASIC23.74■■□□□ 1.39
USP54Q70EL1 PFDN6-201ENST00000374606 740 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
USP54Q70EL1 AL122058.1-202ENST00000426580 252 ntTSL 3 BASIC23.74■■□□□ 1.39
USP54Q70EL1 STX10-207ENST00000589083 1241 ntTSL 1 (best) BASIC23.74■■□□□ 1.39
USP54Q70EL1 MTDHP5-201ENST00000598980 586 ntBASIC23.74■■□□□ 1.39
USP54Q70EL1 MCCC2-209ENST00000629193 1128 ntTSL 1 (best) BASIC23.74■■□□□ 1.39
USP54Q70EL1 TMEM59L-201ENST00000262817 1613 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
USP54Q70EL1 APBB1-215ENST00000608394 2128 ntTSL 5 BASIC23.74■■□□□ 1.39
USP54Q70EL1 APBB1-222ENST00000610474 2147 ntTSL 5 BASIC23.74■■□□□ 1.39
USP54Q70EL1 ILF3-217ENST00000589998 2622 ntTSL 2 BASIC23.74■■□□□ 1.39
USP54Q70EL1 LINC02415-201ENST00000508505 1315 ntTSL 1 (best) BASIC23.74■■□□□ 1.39
USP54Q70EL1 RSAD1-201ENST00000258955 2528 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
USP54Q70EL1 LRCH3-207ENST00000441090 2034 ntTSL 2 BASIC23.74■■□□□ 1.39
USP54Q70EL1 HAPLN3-204ENST00000562889 1547 ntTSL 5 BASIC23.74■■□□□ 1.39
USP54Q70EL1 AC093627.6-201ENST00000478759 1365 ntTSL 5 BASIC23.74■■□□□ 1.39
USP54Q70EL1 ARFRP1-208ENST00000612256 2974 ntTSL 1 (best) BASIC23.74■■□□□ 1.39
USP54Q70EL1 TIMM17B-202ENST00000396779 1099 ntTSL 5 BASIC23.73■■□□□ 1.39
USP54Q70EL1 JMJD7-203ENST00000408047 1192 ntTSL 5 BASIC23.73■■□□□ 1.39
USP54Q70EL1 AC112482.1-201ENST00000492080 688 ntBASIC23.73■■□□□ 1.39
USP54Q70EL1 LHX5-AS1-201ENST00000551357 522 ntTSL 2 BASIC23.73■■□□□ 1.39
USP54Q70EL1 PDPK2P-202ENST00000562415 1191 ntBASIC23.73■■□□□ 1.39
USP54Q70EL1 ARMC7-204ENST00000582136 1204 ntTSL 2 BASIC23.73■■□□□ 1.39
USP54Q70EL1 AC027612.4-201ENST00000605371 583 ntBASIC23.73■■□□□ 1.39
USP54Q70EL1 AL513190.1-201ENST00000621254 727 ntBASIC23.73■■□□□ 1.39
USP54Q70EL1 INHA-201ENST00000243786 1468 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
USP54Q70EL1 TMEM79-203ENST00000405535 2201 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
USP54Q70EL1 THAP7-AS1-203ENST00000452284 2298 ntTSL 2 BASIC23.73■■□□□ 1.39
USP54Q70EL1 NPEPL1-203ENST00000525817 1780 ntTSL 2 BASIC23.73■■□□□ 1.39
USP54Q70EL1 TMPRSS5-201ENST00000299882 2232 ntAPPRIS P3 TSL 1 (best) BASIC23.73■■□□□ 1.39
USP54Q70EL1 PRODH-205ENST00000420436 2034 ntAPPRIS ALT2 TSL 2 BASIC23.73■■□□□ 1.39
USP54Q70EL1 SIGLEC6-203ENST00000359982 1811 ntAPPRIS ALT2 TSL 2 BASIC23.73■■□□□ 1.39
USP54Q70EL1 LYPLA2-204ENST00000374505 907 ntTSL 3 BASIC23.73■■□□□ 1.39
USP54Q70EL1 CRYGEP-201ENST00000412192 528 ntBASIC23.73■■□□□ 1.39
USP54Q70EL1 LINC00899-202ENST00000444890 493 ntTSL 3 BASIC23.73■■□□□ 1.39
USP54Q70EL1 AC063976.1-201ENST00000457890 381 ntTSL 2 BASIC23.73■■□□□ 1.39
USP54Q70EL1 STK19B-204ENST00000512515 211 ntBASIC23.73■■□□□ 1.39
USP54Q70EL1 AC130456.4-201ENST00000568635 665 ntTSL 2 BASIC23.73■■□□□ 1.39
USP54Q70EL1 ICAM2-205ENST00000578379 1064 ntTSL 5 BASIC23.73■■□□□ 1.39
USP54Q70EL1 ICAM2-206ENST00000578892 1056 ntTSL 3 BASIC23.73■■□□□ 1.39
USP54Q70EL1 AL353135.1-201ENST00000606729 504 ntBASIC23.73■■□□□ 1.39
USP54Q70EL1 LINC01011-201ENST00000445000 2811 ntTSL 2 BASIC23.73■■□□□ 1.39
USP54Q70EL1 ZZZ3-201ENST00000370798 2468 ntTSL 1 (best) BASIC23.72■■□□□ 1.39
USP54Q70EL1 INPP5J-204ENST00000402238 1564 ntTSL 2 BASIC23.72■■□□□ 1.39
USP54Q70EL1 IL18BP-214ENST00000620017 1566 ntTSL 5 BASIC23.72■■□□□ 1.39
USP54Q70EL1 AC008969.1-203ENST00000313957 1897 ntTSL 2 BASIC23.72■■□□□ 1.39
USP54Q70EL1 RAD23A-201ENST00000316856 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC23.72■■□□□ 1.39
USP54Q70EL1 NFKBID-210ENST00000606253 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC23.72■■□□□ 1.39
USP54Q70EL1 SPDYE5-203ENST00000625065 1700 ntAPPRIS P2 TSL 5 BASIC23.72■■□□□ 1.39
USP54Q70EL1 APPL2-201ENST00000258530 3239 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
USP54Q70EL1 ATP5G3-202ENST00000392541 842 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
USP54Q70EL1 AP1S3-203ENST00000396654 830 ntAPPRIS P2 TSL 2 BASIC23.72■■□□□ 1.39
USP54Q70EL1 MRPL20P1-201ENST00000400819 433 ntBASIC23.72■■□□□ 1.39
USP54Q70EL1 RFX3-AS1-201ENST00000423112 552 ntTSL 3 BASIC23.72■■□□□ 1.39
USP54Q70EL1 AC093714.2-201ENST00000489626 763 ntTSL 3 BASIC23.72■■□□□ 1.39
USP54Q70EL1 ETFBKMT-202ENST00000395763 2055 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
Retrieved 100 of 98,524 protein–RNA pairs in 44.3 ms